Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012445.1

Orthogroup ID

OG0001042

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1406

Gene Structure 1406 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012445.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

atgaaagaagaaagattgaagagcaagtctctctacttatgttttgaggagcaaataactcgttttaatgttgctcaagttattcaatctatcgaattgagccacgtgttggtagcactaactgatggagatcatggctgcgatgaacttaagttaggtgaagttgcttatagattcggactagactcttatgttccctgtaggataagcaatagtgtcatcggctccaaaataatttgcttcggtggcatggtatttaatagaaaggaaagcactactactcctcctcccaagacgattttaagtaaagaagtctatgtgtttgagacagctacaagcatagatccgaatccgacattgcagccctcccaagtgtttaagactagtagactcgatcccttcctagcagaggtggctggcgaactatattgtttcggtggcccatgttactctgagtcattcgaggtatttgacaagacacatgagaaatggttgcctgtggatgtgcctcctcagagatatccctacggtgtctgtcatgcaattttgggaaacaaaatgttactctgggtaaaaaatcagaccggagtaatcaggtttgagtgtttgacatcgctcaactggaaaaaggatggacagagttggactcttgtttgggaagctgcattccctattcatgagcatttttatgaggattatgattatttttctcctggtgatgatgatgatgatgatgaggaggaggaggaggatgttagcagg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00020 ko00190 ko01100 ko01110 ko01120 ko01130 ko01200 ko03015 ko03040 ko04714 ko04932 ko05010 ko05012 ko05016 map00020 map00190 map01100 map01110 map01120 map01130 map01200 map03015 map03040 map04714 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

RRM_1

Protein Analysis

254

Amino Acids

29.05

Weight (kDa)

4.68

Isoelectric Point (pI)

46.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001042)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g43023 FvH4_4g00821 FvH4_6g46861 FvH4_6g50642 FvH4_6g50762 FvH4_6g50763
rosa_chinensis	RchiOBHm_Chr2g0172011
rosa_laevigata	RLG00000019866 RLG00000021935 RLG00000021943 RLG00000022032 RLG00000022034 RLG00000022036 RLG00000022038 RLG00000022040 RLG00000022042 RLG00000022044 RLG00000022046 RLG00000022049 RLG00000022051 RLG00000022068 RLG00000022070 RLG00000022080 RLG00000022083 RLG00000022086 RLG00000034562
rosa_multiflora	Rmu_sc0008262.1_g000002 Rmu_sc0012445.1_g000001 Rmu_sc0012468.1_g000010 Rmu_sc0036915.1_g000001 Rmu_ssc0000252.1_g000031 Rmu_ssc0000252.1_g000036 Rmu_ssc0000252.1_g000040
rosa_roxburghii	Rroxscaffold_2G00080270 Rroxscaffold_2G00080490
rosa_rugosa	Rorug02G0547700 Rorug02G0555600 Rorug02G0555600 Rorug02G0555700 Rorug02G0556100
rosa_samantha	Rh2BG643700 Rh2BG644000 Rh2BG644100 Rh2BG644500 Rh2BG644600 Rh2BG645800 Rh2CG610600 Rh2CG610800 Rh2CG611200 Rh2CG611500 Rh2CG611700 Rh2CG612000 Rh2DG658500 Rh2DG658800 Rh2DG658900 Rh2DG659100 Rh2DG659400 Rh2DG659700 Rh2DG660000 Rh4BG019700 Rh5BG331700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	109
AccI	GTMKAC	1 cut(s)	388
AclWI	GGATC	2 cut(s)	338, 389
AcvI	CACGTG	1 cut(s)	106
AfiI	CCNNNNNNNGG	2 cut(s)	109, 409
AflII	CTTAAG	1 cut(s)	149
AflIII	ACRYGT	1 cut(s)	105
AgsI	TTSAA	2 cut(s)	19, 86
AhlI	ACTAGT	1 cut(s)	383
AjnI	CCWGG	1 cut(s)	712
AluBI	AGCT	2 cut(s)	332, 662
AluI	AGCT	2 cut(s)	332, 662
Alw26I	GTCTC	2 cut(s)	33, 320
AlwI	GGATC	2 cut(s)	338, 389
AoxI	GGCC	1 cut(s)	439
ApeKI	GCWGC	3 cut(s)	138, 361, 662
AspS9I	GGNCC	1 cut(s)	440
AsuHPI	GGTGA	2 cut(s)	170, 728
BbrPI	CACGTG	1 cut(s)	106
BbvI	GCAGC	3 cut(s)	125, 373, 649
BccI	CCATC	2 cut(s)	119, 626
BcgI	CGANNNNNNTGC	2 cut(s)	41, 75
BciT130I	CCWGG	1 cut(s)	714
BcoDI	GTCTC	2 cut(s)	33, 320
BcuI	ACTAGT	1 cut(s)	383
BfaI	CTAG	3 cut(s)	182, 384, 404
BfmI	CTRYAG	1 cut(s)	199
BfrI	CTTAAG	1 cut(s)	149
BisI	GCNGC	3 cut(s)	139, 362, 663
BlsI	GCNGC	3 cut(s)	140, 363, 664
Bme1390I	CCNGG	1 cut(s)	714
BmgT120I	GGNCC	1 cut(s)	440
BmiI	GGNNCC	1 cut(s)	226
BmrFI	CCNGG	1 cut(s)	714
BplI	GAGNNNNNCTC	4 cut(s)	13, 45, 631, 663
BpuEI	CTTGAG	1 cut(s)	60
BsaAI	YACGTR	1 cut(s)	106
BsaBI	GATNNNNATC	2 cut(s)	129, 348
BsaWI	WCCGGW	1 cut(s)	584
BsaXI	ACNNNNNCTCC	6 cut(s)	265, 268, 271, 295, 298, 301
Bsc4I	CCNNNNNNNGG	2 cut(s)	109, 409
Bse1I	ACTGG	1 cut(s)	626
Bse3DI	GCAATG	1 cut(s)	356
Bse8I	GATNNNNATC	2 cut(s)	129, 348
BseBI	CCWGG	1 cut(s)	714
BseGI	GGATG	3 cut(s)	508, 637, 757
BseJI	GATNNNNATC	2 cut(s)	129, 348
BseLI	CCNNNNNNNGG	2 cut(s)	109, 409
BseMI	GCAATG	1 cut(s)	356
BseMII	CTCAG	2 cut(s)	444, 527
BseNI	ACTGG	1 cut(s)	626
BseRI	GAGGAG	8 cut(s)	62, 273, 276, 501, 752, 755, 758, 761
BseXI	GCAGC	3 cut(s)	125, 373, 649
BshFI	GGCC	1 cut(s)	441
BsiSI	CCGG	1 cut(s)	585
BslI	CCNNNNNNNGG	2 cut(s)	109, 409
BsmAI	GTCTC	2 cut(s)	33, 320
BsmI	GAATGC	1 cut(s)	665
BsnI	GGCC	1 cut(s)	441
Bsp143I	GATC	3 cut(s)	130, 343, 394
BspANI	GGCC	1 cut(s)	441
BspCNI	CTCAG	2 cut(s)	445, 526
BspHI	TCATGA	1 cut(s)	676
BspLI	GGNNCC	1 cut(s)	226
BspPI	GGATC	2 cut(s)	338, 389
BspQI	GCTCTTC	1 cut(s)	14
BspTI	CTTAAG	1 cut(s)	149
BsrDI	GCAATG	1 cut(s)	356
BsrI	ACTGG	1 cut(s)	626
BssMI	GATC	3 cut(s)	130, 343, 394
Bst2UI	CCWGG	1 cut(s)	714
Bst4CI	ACNGT	1 cut(s)	530
Bst6I	CTCTTC	1 cut(s)	14
BstAFI	CTTAAG	1 cut(s)	149
BstBAI	YACGTR	1 cut(s)	106
BstC8I	GCNNGC	1 cut(s)	418
BstDEI	CTNAG	2 cut(s)	453, 513
BstENI	CCTNNNNNAGG	1 cut(s)	407
BstF5I	GGATG	3 cut(s)	508, 637, 757
BstKTI	GATC	3 cut(s)	133, 346, 397
BstMAI	GTCTC	2 cut(s)	33, 320
BstMBI	GATC	3 cut(s)	130, 343, 394
BstMWI	GCNNNNNNNGC	2 cut(s)	246, 413
BstNI	CCWGG	1 cut(s)	714
BstSCI	CCNGG	1 cut(s)	712
BstSFI	CTRYAG	1 cut(s)	199
BstV1I	GCAGC	3 cut(s)	125, 373, 649
BstX2I	RGATCY	1 cut(s)	343
BstYI	RGATCY	1 cut(s)	343
BsuRI	GGCC	1 cut(s)	441
BtgZI	GCGATG	2 cut(s)	156, 597
BtsCI	GGATG	3 cut(s)	508, 637, 757
Cac8I	GCNNGC	1 cut(s)	418
CciI	TCATGA	1 cut(s)	676
Cfr13I	GGNCC	1 cut(s)	440
CviAII	CATG	6 cut(s)	134, 250, 444, 482, 539, 677
CviJI	RGCY	8 cut(s)	102, 138, 225, 332, 364, 416, 441, 662
CviKI_1	RGCY	8 cut(s)	102, 138, 225, 332, 364, 416, 441, 662
DdeI	CTNAG	2 cut(s)	453, 513
DpnI	GATC	3 cut(s)	132, 345, 396
DpnII	GATC	3 cut(s)	130, 343, 394
Eam1104I	CTCTTC	1 cut(s)	14
EarI	CTCTTC	1 cut(s)	14
Eco32I	GATATC	1 cut(s)	521
Eco72I	CACGTG	1 cut(s)	106
EcoNI	CCTNNNNNAGG	1 cut(s)	407
EcoRII	CCWGG	1 cut(s)	712
EcoRV	GATATC	1 cut(s)	521
FaeI	CATG	6 cut(s)	137, 253, 447, 485, 542, 680
FatI	CATG	6 cut(s)	133, 249, 443, 481, 538, 676
FblI	GTMKAC	1 cut(s)	388
Fnu4HI	GCNGC	3 cut(s)	139, 362, 663
FokI	GGATG	2 cut(s)	515, 644
Fsp4HI	GCNGC	3 cut(s)	139, 362, 663
FspBI	CTAG	3 cut(s)	182, 384, 404
GluI	GCNGC	3 cut(s)	139, 362, 663
HaeIII	GGCC	1 cut(s)	441
HapII	CCGG	1 cut(s)	585
Hin1II	CATG	6 cut(s)	137, 253, 447, 485, 542, 680
HinfI	GANTC	6 cut(s)	174, 185, 349, 390, 455, 646
HpaII	CCGG	1 cut(s)	585
HphI	GGTGA	2 cut(s)	170, 728
Hpy166II	GTNNAC	1 cut(s)	389
Hpy188I	TCNGA	6 cut(s)	179, 348, 354, 454, 516, 582
Hpy188III	TCNNGA	1 cut(s)	677
Hpy8I	GTNNAC	1 cut(s)	389
HpyAV	CCTTC	1 cut(s)	409
HpyCH4III	ACNGT	1 cut(s)	530
HpyCH4IV	ACGT	1 cut(s)	105
HpyCH4V	TGCA	3 cut(s)	361, 542, 665
HpyF10VI	GCNNNNNNNGC	2 cut(s)	246, 413
HpyF3I	CTNAG	2 cut(s)	453, 513
HpySE526I	ACGT	1 cut(s)	105
Hsp92II	CATG	6 cut(s)	137, 253, 447, 485, 542, 680
Kzo9I	GATC	3 cut(s)	130, 343, 394
LguI	GCTCTTC	1 cut(s)	14
LmnI	GCTCC	2 cut(s)	49, 230
Lsp1109I	GCAGC	3 cut(s)	125, 373, 649
MaeI	CTAG	3 cut(s)	182, 384, 404
MaeII	ACGT	1 cut(s)	105
MaeIII	GTNAC	2 cut(s)	446, 561
MalI	GATC	3 cut(s)	132, 345, 396
MboI	GATC	3 cut(s)	130, 343, 394
MboII	GAAGA	2 cut(s)	20, 31
MflI	RGATCY	1 cut(s)	343
MluCI	AATT	3 cut(s)	95, 234, 543
MlyI	GAGTC	4 cut(s)	179, 384, 464, 640
MmeI	TCCRAC	2 cut(s)	377, 623
MseI	TTAA	5 cut(s)	66, 150, 258, 302, 378
MslI	CAYNNNNRTG	1 cut(s)	687
MspCI	CTTAAG	1 cut(s)	149
MspI	CCGG	1 cut(s)	585
MspR9I	CCNGG	1 cut(s)	714
Mva1269I	GAATGC	1 cut(s)	665
MvaI	CCWGG	1 cut(s)	714
MwoI	GCNNNNNNNGC	2 cut(s)	246, 413
NdeII	GATC	3 cut(s)	130, 343, 394
NlaIII	CATG	6 cut(s)	137, 253, 447, 485, 542, 680
NlaIV	GGNNCC	1 cut(s)	226
PagI	TCATGA	1 cut(s)	676
PciSI	GCTCTTC	1 cut(s)	14
PctI	GAATGC	1 cut(s)	665
PfeI	GAWTC	2 cut(s)	174, 349
PflMI	CCANNNNNTGG	1 cut(s)	109
PkrI	GCNGC	3 cut(s)	140, 363, 664
PleI	GAGTC	4 cut(s)	179, 384, 463, 640
PmaCI	CACGTG	1 cut(s)	106
PmlI	CACGTG	1 cut(s)	106
PpsI	GAGTC	4 cut(s)	179, 384, 463, 640
Ppu21I	YACGTR	1 cut(s)	106
Psp6I	CCWGG	1 cut(s)	712
PspCI	CACGTG	1 cut(s)	106
PspGI	CCWGG	1 cut(s)	712
PspN4I	GGNNCC	1 cut(s)	226
PspPI	GGNCC	1 cut(s)	440
PsuI	RGATCY	1 cut(s)	343
RseI	CAYNNNNRTG	1 cut(s)	687
SapI	GCTCTTC	1 cut(s)	14
SaqAI	TTAA	5 cut(s)	66, 150, 258, 302, 378
SatI	GCNGC	3 cut(s)	139, 362, 663
Sau3AI	GATC	3 cut(s)	130, 343, 394
Sau96I	GGNCC	1 cut(s)	440
SchI	GAGTC	4 cut(s)	179, 384, 464, 640
ScrFI	CCNGG	1 cut(s)	714
SetI	ASST	7 cut(s)	108, 160, 334, 414, 468, 599, 664
SfcI	CTRYAG	1 cut(s)	199
SmiMI	CAYNNNNRTG	1 cut(s)	687
SmlI	CTYRAG	2 cut(s)	75, 149
SmoI	CTYRAG	2 cut(s)	75, 149
SpeI	ACTAGT	1 cut(s)	383
Sse9I	AATT	3 cut(s)	95, 234, 543
SspMI	CTAG	3 cut(s)	182, 384, 404
StyD4I	CCNGG	1 cut(s)	712
TaaI	ACNGT	1 cut(s)	530
TaiI	ACGT	1 cut(s)	108
TaqI	TCGA	3 cut(s)	93, 393, 462
TasI	AATT	3 cut(s)	95, 234, 543
TfiI	GAWTC	2 cut(s)	174, 349
Tru1I	TTAA	5 cut(s)	66, 150, 258, 302, 378
Tru9I	TTAA	5 cut(s)	66, 150, 258, 302, 378
TseI	GCWGC	3 cut(s)	138, 361, 662
TspDTI	ATGAA	3 cut(s)	17, 159, 665
Van91I	CCANNNNNTGG	1 cut(s)	109
Vha464I	CTTAAG	1 cut(s)	149
XagI	CCTNNNNNAGG	1 cut(s)	407
XmiI	GTMKAC	1 cut(s)	388
XspI	CTAG	3 cut(s)	182, 384, 404

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.