Rroxscaffold_2G00080270

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0001042
Physical Location & Seq
Reverse (-)
3187671 .. 3188322
652 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00080270.1

Sequence Viewer

Length: 618 bp
ATGGCGTGGTGTAGGCGGCAATGTTTTGCAGTGTTGGCAAGTTTTGCAACTAGAAAAGCAGCGGCCGCGGCGGCTACGACAACGTTAGCATGCAACTGGAAGAAGGAGACGAACAAAATTAGCATGTTTTCAGAATTCATCAGAAGATATTCTTCTACTTTAGCACCACTTAAGGCCGAGGAGAAAAAGAAGAAAGAAATCATGGAAGAAAAAAGCTTTAAGTATAAGTCTCTCTACTTGTGTTTCGAGGAGGACACTGACGACAATGTTCATGTTATTCAATCCATCAGATTAAGCCATTTGTTGGCACCACCAGTACATGGCGGCGATGATATGAAATTACAGAGAGTTGCTTATAGATGTGGACCGAAAACGGTTGTTCCCGCTGATATGAGCACTGGTGTCGTTGAACCTGAGGAAAGAGACACTACTTCTCATATTGAACAATATTCACTAAGTAAAGAAGTTAGTGTGTTTGAGACAGATCCAAGCATAGATCCAAATCCGAGATTGCAGCCCTCCCAAGTTTTCAAGATTAGTACACCTGAACCTGTTCTAGTAGAGGTGGACGACAAACTTTATCGTTTCGGTGGTCGATGTGACTGTGAGTCATTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

205

Amino Acids

23.25

Weight (kDa)

6.45

Isoelectric Point (pI)

47.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 307
AccB7I CCANNNNNTGG 2 cut(s) 304, 320
AccII CGCG 1 cut(s) 68
AciI CCGC 7 cut(s) 16, 62, 66, 68, 71, 324, 384
AclI AACGTT 1 cut(s) 83
AclWI GGATC 2 cut(s) 479, 491
AcoI YGGCCR 1 cut(s) 63
AcsI RAATTY 1 cut(s) 134
AfaI GTAC 2 cut(s) 318, 541
AfiI CCNNNNNNNGG 2 cut(s) 304, 320
AflII CTTAAG 1 cut(s) 170
AgsI TTSAA 4 cut(s) 281, 410, 443, 532
AhdI GACNNNNNGTC 1 cut(s) 607
AluBI AGCT 1 cut(s) 216
AluI AGCT 1 cut(s) 216
Alw21I GWGCWC 1 cut(s) 398
Alw26I GTCTC 4 cut(s) 101, 234, 417, 473
AlwI GGATC 2 cut(s) 479, 491
AoxI GGCC 2 cut(s) 63, 174
ApeKI GCWGC 2 cut(s) 59, 514
ApoI RAATTY 1 cut(s) 134
Asp700I GAANNNNTTC 2 cut(s) 148, 552
AspS9I GGNCC 1 cut(s) 365
AvaII GGWCC 1 cut(s) 365
AxyI CCTNAGG 1 cut(s) 414
BanI GGYRCC 1 cut(s) 307
Bbv12I GWGCWC 1 cut(s) 398
BbvI GCAGC 2 cut(s) 71, 526
BccI CCATC 1 cut(s) 293
BcgI CGANNNNNNTGC 2 cut(s) 385, 419
BcoDI GTCTC 4 cut(s) 101, 234, 417, 473
BfaI CTAG 3 cut(s) 51, 557, 616
BfrI CTTAAG 1 cut(s) 170
BglI GCCNNNNNGGC 1 cut(s) 71
BisI GCNGC 8 cut(s) 17, 60, 63, 66, 69, 72, 325, 515
BlsI GCNGC 8 cut(s) 18, 61, 64, 67, 70, 73, 326, 516
Bme18I GGWCC 1 cut(s) 365
BmeRI GACNNNNNGTC 1 cut(s) 607
BmgT120I GGNCC 1 cut(s) 365
BmiI GGNNCC 1 cut(s) 309
BsaBI GATNNNNATC 1 cut(s) 501
BsaJI CCNNGG 2 cut(s) 66, 177
Bsc4I CCNNNNNNNGG 2 cut(s) 304, 320
Bse1I ACTGG 3 cut(s) 101, 314, 403
Bse21I CCTNAGG 1 cut(s) 414
Bse3DI GCAATG 1 cut(s) 26
Bse8I GATNNNNATC 1 cut(s) 501
BseDI CCNNGG 2 cut(s) 66, 177
BseJI GATNNNNATC 1 cut(s) 501
BseLI CCNNNNNNNGG 2 cut(s) 304, 320
BseMI GCAATG 1 cut(s) 26
BseMII CTCAG 1 cut(s) 405
BseNI ACTGG 3 cut(s) 101, 314, 403
BseRI GAGGAG 2 cut(s) 194, 263
BseX3I CGGCCG 1 cut(s) 63
BseXI GCAGC 2 cut(s) 71, 526
Bsh1236I CGCG 1 cut(s) 68
Bsh1285I CGRYCG 1 cut(s) 66
BshFI GGCC 2 cut(s) 65, 176
BshNI GGYRCC 1 cut(s) 307
BsiEI CGRYCG 1 cut(s) 66
BsiHKAI GWGCWC 1 cut(s) 398
BslI CCNNNNNNNGG 2 cut(s) 304, 320
BsmAI GTCTC 4 cut(s) 101, 234, 417, 473
BsmBI CGTCTC 1 cut(s) 101
BsnI GGCC 2 cut(s) 65, 176
Bsp1286I GDGCHC 1 cut(s) 398
Bsp143I GATC 2 cut(s) 484, 496
BspACI CCGC 7 cut(s) 16, 62, 66, 68, 71, 324, 384
BspANI GGCC 2 cut(s) 65, 176
BspCNI CTCAG 1 cut(s) 406
BspFNI CGCG 1 cut(s) 68
BspLI GGNNCC 1 cut(s) 309
BspPI GGATC 2 cut(s) 479, 491
BspT107I GGYRCC 1 cut(s) 307
BspTI CTTAAG 1 cut(s) 170
BsrDI GCAATG 1 cut(s) 26
BsrI ACTGG 3 cut(s) 101, 314, 403
BssECI CCNNGG 2 cut(s) 66, 177
BssMI GATC 2 cut(s) 484, 496
Bst4CI ACNGT 2 cut(s) 376, 605
BstAFI CTTAAG 1 cut(s) 170
BstAPI GCANNNNNTGC 1 cut(s) 44
BstC8I GCNNGC 1 cut(s) 91
BstDEI CTNAG 2 cut(s) 414, 455
BstDSI CCRYGG 1 cut(s) 66
BstFNI CGCG 1 cut(s) 68
BstKTI GATC 2 cut(s) 487, 499
BstMAI GTCTC 4 cut(s) 101, 234, 417, 473
BstMBI GATC 2 cut(s) 484, 496
BstMCI CGRYCG 1 cut(s) 66
BstMWI GCNNNNNNNGC 5 cut(s) 35, 44, 65, 68, 71
BstNSI RCATGY 2 cut(s) 93, 127
BstUI CGCG 1 cut(s) 68
BstV1I GCAGC 2 cut(s) 71, 526
BstX2I RGATCY 2 cut(s) 484, 496
BstYI RGATCY 2 cut(s) 484, 496
BstZI CGGCCG 1 cut(s) 63
Bsu36I CCTNAGG 1 cut(s) 414
BsuRI GGCC 2 cut(s) 65, 176
BtgI CCRYGG 1 cut(s) 66
BtgZI GCGATG 1 cut(s) 342
BtsI GCAGTG 1 cut(s) 36
BtsIMutI CAGTG 3 cut(s) 36, 255, 396
Cac8I GCNNGC 1 cut(s) 91
CciNI GCGGCCGC 1 cut(s) 63
Cfr13I GGNCC 1 cut(s) 365
Cfr42I CCGCGG 1 cut(s) 69
Csp6I GTAC 2 cut(s) 317, 540
CviAII CATG 5 cut(s) 90, 124, 202, 272, 320
CviJI RGCY 6 cut(s) 65, 74, 176, 216, 297, 517
CviKI_1 RGCY 6 cut(s) 65, 74, 176, 216, 297, 517
CviQI GTAC 2 cut(s) 317, 540
DdeI CTNAG 2 cut(s) 414, 455
DpnI GATC 2 cut(s) 486, 498
DpnII GATC 2 cut(s) 484, 496
DriI GACNNNNNGTC 1 cut(s) 607
EaeI YGGCCR 1 cut(s) 63
EagI CGGCCG 1 cut(s) 63
Eam1105I GACNNNNNGTC 1 cut(s) 607
EclXI CGGCCG 1 cut(s) 63
Eco47I GGWCC 1 cut(s) 365
Eco52I CGGCCG 1 cut(s) 63
Eco81I CCTNAGG 1 cut(s) 414
EcoRI GAATTC 1 cut(s) 134
Esp3I CGTCTC 1 cut(s) 101
FaeI CATG 5 cut(s) 93, 127, 205, 275, 323
FalI AAGNNNNNCTT 2 cut(s) 136, 168
FatI CATG 5 cut(s) 89, 123, 201, 271, 319
FauI CCCGC 1 cut(s) 391
Fnu4HI GCNGC 8 cut(s) 17, 60, 63, 66, 69, 72, 325, 515
Fsp4HI GCNGC 8 cut(s) 17, 60, 63, 66, 69, 72, 325, 515
FspBI CTAG 3 cut(s) 51, 557, 616
GluI GCNGC 8 cut(s) 17, 60, 63, 66, 69, 72, 325, 515
HaeIII GGCC 2 cut(s) 65, 176
Hin1II CATG 5 cut(s) 93, 127, 205, 275, 323
HindIII AAGCTT 1 cut(s) 214
HinfI GANTC 1 cut(s) 608
Hpy166II GTNNAC 3 cut(s) 365, 542, 568
Hpy188I TCNGA 4 cut(s) 133, 143, 290, 507
Hpy188III TCNNGA 1 cut(s) 532
Hpy8I GTNNAC 3 cut(s) 365, 542, 568
HpyAV CCTTC 1 cut(s) 97
HpyCH4III ACNGT 2 cut(s) 376, 605
HpyCH4IV ACGT 1 cut(s) 83
HpyCH4V TGCA 4 cut(s) 29, 47, 93, 514
HpyF10VI GCNNNNNNNGC 5 cut(s) 35, 44, 65, 68, 71
HpyF3I CTNAG 2 cut(s) 414, 455
HpySE526I ACGT 1 cut(s) 83
Hsp92II CATG 5 cut(s) 93, 127, 205, 275, 323
KspI CCGCGG 1 cut(s) 69
Kzo9I GATC 2 cut(s) 484, 496
LpnPI CCDG 6 cut(s) 82, 327, 384, 426, 558, 564
Lsp1109I GCAGC 2 cut(s) 71, 526
MaeI CTAG 3 cut(s) 51, 557, 616
MaeII ACGT 1 cut(s) 83
MaeIII GTNAC 1 cut(s) 599
MalI GATC 2 cut(s) 486, 498
MboI GATC 2 cut(s) 484, 496
MboII GAAGA 5 cut(s) 112, 144, 156, 202, 218
MflI RGATCY 2 cut(s) 484, 496
MhlI GDGCHC 1 cut(s) 398
MluCI AATT 3 cut(s) 117, 134, 338
MlyI GAGTC 1 cut(s) 617
MnlI CCTC 6 cut(s) 172, 241, 244, 409, 529, 556
MroXI GAANNNNTTC 2 cut(s) 148, 552
MseI TTAA 3 cut(s) 171, 219, 293
MspA1I CMGCKG 3 cut(s) 62, 68, 386
MspCI CTTAAG 1 cut(s) 170
MvnI CGCG 1 cut(s) 68
MwoI GCNNNNNNNGC 5 cut(s) 35, 44, 65, 68, 71
NdeII GATC 2 cut(s) 484, 496
NlaIII CATG 5 cut(s) 93, 127, 205, 275, 323
NlaIV GGNNCC 1 cut(s) 309
NmeAIII GCCGAG 1 cut(s) 202
NmuCI GTSAC 1 cut(s) 599
NotI GCGGCCGC 1 cut(s) 63
NspI RCATGY 2 cut(s) 93, 127
PaeI GCATGC 1 cut(s) 93
PdmI GAANNNNTTC 2 cut(s) 148, 552
PflMI CCANNNNNTGG 2 cut(s) 304, 320
PkrI GCNGC 8 cut(s) 18, 61, 64, 67, 70, 73, 326, 516
PleI GAGTC 1 cut(s) 616
PpsI GAGTC 1 cut(s) 616
Psp1406I AACGTT 1 cut(s) 83
PspN4I GGNNCC 1 cut(s) 309
PspPI GGNCC 1 cut(s) 365
PsuI RGATCY 2 cut(s) 484, 496
RsaI GTAC 2 cut(s) 318, 541
RsaNI GTAC 2 cut(s) 317, 540
SacII CCGCGG 1 cut(s) 69
SaqAI TTAA 3 cut(s) 171, 219, 293
SatI GCNGC 8 cut(s) 17, 60, 63, 66, 69, 72, 325, 515
Sau3AI GATC 2 cut(s) 484, 496
Sau96I GGNCC 1 cut(s) 365
SchI GAGTC 1 cut(s) 617
SduI GDGCHC 1 cut(s) 398
SetI ASST 6 cut(s) 86, 218, 415, 547, 553, 567
Sfr303I CCGCGG 1 cut(s) 69
SgrBI CCGCGG 1 cut(s) 69
SinI GGWCC 1 cut(s) 365
SmlI CTYRAG 1 cut(s) 170
SmoI CTYRAG 1 cut(s) 170
SphI GCATGC 1 cut(s) 93
Sse9I AATT 3 cut(s) 117, 134, 338
SsiI CCGC 7 cut(s) 16, 62, 66, 68, 71, 324, 384
SspI AATATT 1 cut(s) 449
SspMI CTAG 3 cut(s) 51, 557, 616
TaaI ACNGT 2 cut(s) 376, 605
TaiI ACGT 1 cut(s) 86
TaqI TCGA 2 cut(s) 246, 595
TaqII GACCGA 1 cut(s) 382
TasI AATT 3 cut(s) 117, 134, 338
TatI WGTACW 2 cut(s) 316, 539
TauI GCSGC 6 cut(s) 19, 65, 68, 71, 74, 327
Tru1I TTAA 3 cut(s) 171, 219, 293
Tru9I TTAA 3 cut(s) 171, 219, 293
TscAI CASTG 3 cut(s) 36, 262, 403
TseFI GTSAC 1 cut(s) 599
TseI GCWGC 2 cut(s) 59, 514
Tsp45I GTSAC 1 cut(s) 599
TspDTI ATGAA 3 cut(s) 127, 260, 350
TspRI CASTG 3 cut(s) 36, 262, 403
Van91I CCANNNNNTGG 2 cut(s) 304, 320
Vha464I CTTAAG 1 cut(s) 170
VpaK11BI GGWCC 1 cut(s) 365
XapI RAATTY 1 cut(s) 134
XceI RCATGY 2 cut(s) 93, 127
XmnI GAANNNNTTC 2 cut(s) 148, 552
XspI CTAG 3 cut(s) 51, 557, 616
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.