Rh2BG644100

RNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0001042
Physical Location & Seq
Forward (+)
86332277 .. 86334241
1965 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG644100.1

Sequence Viewer

Length: 1416 bp
ATGTTGGAAGGTTTTGCAACCAGAAAAGCAGCGGCTGCGGCGGCTACGTTAACTTTAGCAAGCAACTGGAAGAATGAGACGAAGAAAATTAGCATGTTTTCAGAATTCATAAGAAGAAATTCTTCTACTTTAGCAACACTTGAGGCAGAGGAGAAAAAGAAGAAAGGAATCATGGAAGAAGAAAGCTTTAAGTATAAGTCACTCTATTTATGTTTCGAGGAGTACACTAACGACAATGCTCATGTTATTCAATCCATCAGATTAAGCCATCTGTTGGCACCACCATTACATGGCAGCGATGATATGAAATTACAGAGAGTTGCTTATAGATGTGGACCGGATACTGTTGTTCCCCTACATGTGAGTACTGGCGTCGTCGGCTCCAAAATTATTCTCTTTGGTGGTAAGGTTTTTCCTCCAGTACGACATCATCATATTTTTGAATATTCACTAAGCAAAGAAGTTTGTGTGTTTGAGACAGATCCAAGCATAGATCCAAACCCGAAATTGCAGCCTTCCCAAATTTTTAAGATTAGTAGACGTGAACCTGTTTTAGTAGAGATGGACGACAAACTTTATCGTTTCGGTGGTCGGTGTGACTGTGAGTCATTCGAGGTATTTGAACCAATACAGGATGACTGGTTGCCTCTGGATGCGCCTCCTTGGAAATATCCCTACGGCTTCACTCATGCAATTGCAGGCACCAAAATCCTACTCTGGGGCAGAAATCAGACCGGAGTGTACATGTTTGACGCGACCCATCCGGAAAAAGGATGGACAGAATTAGACCCTTGTTTGGGAAGCTATATTCCCTCTATTGATGGTTATGATCAACTATTTGTCAAGTTGAAGTTTCGTCCTGGTGATGGTGAGGGTTTCCTAATGTTCTCCATTAATTTGGAACAACCTCATACGGTACTAGCCTTCCACATGTCTTGTACATGTGATTCCTTAAAACCTATGGAACCTCTTCAGCTGCCAGAATGGCCTCCAAAATTTCATAGTCCAGATCGATGTCTGTTTTTTCACCTTGGATGGCAAAAAGTCGGTCTTGTTTTCTCCCGTGATTCATTACCTGAGGATACATTACGTGATTACTATTATGATCATTATGATTTCCCTTCTGATTATGATGACGACGATAATGAAGACAACGAAGATGATGATAAAGACAACAAAGACGATGGCCATAATAATGATAATCACGACGCCTCTGACAATGTTAATTATGATTGCCTTGAGGATAGTGACAAGGTGAGAGTTCTTGTCATAATCTTTGAATACGAAATTGCTGAGGAATCCATGGACATCAAATACAAGTTGCTTAGTACTCGCTGCCTTAAATACTCTTCCAAGAATCTTGAAGAAGAATCTCGGACTAGTACCTCACAACTGATAGGTGCCCATGTCATGTAA

Protein Analysis

471

Amino Acids

54.12

Weight (kDa)

4.99

Isoelectric Point (pI)

45.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 277, 701, 1400
AccB7I CCANNNNNTGG 2 cut(s) 274, 290
AccI GTMKAC 1 cut(s) 538
AccII CGCG 1 cut(s) 755
AccIII TCCGGA 1 cut(s) 763
AciI CCGC 3 cut(s) 32, 38, 41
AclWI GGATC 2 cut(s) 476, 488
AcoI YGGCCR 1 cut(s) 1186
AcsI RAATTY 4 cut(s) 104, 118, 522, 995
AcuI CTGAAG 1 cut(s) 956
AcyI GRCGYC 2 cut(s) 372, 1209
AfaI GTAC 8 cut(s) 224, 367, 423, 743, 918, 940, 1330, 1384
AfiI CCNNNNNNNGG 7 cut(s) 274, 290, 718, 770, 796, 797, 866
AflIII ACRYGT 4 cut(s) 358, 744, 930, 941
AgsI TTSAA 6 cut(s) 251, 443, 623, 850, 1280, 1364
AhdI GACNNNNNGTC 1 cut(s) 604
AhlI ACTAGT 1 cut(s) 1379
AjiI CACGTC 1 cut(s) 542
AjnI CCWGG 1 cut(s) 859
AluBI AGCT 3 cut(s) 186, 804, 976
AluI AGCT 3 cut(s) 186, 804, 976
Alw26I GTCTC 2 cut(s) 71, 470
AlwI GGATC 2 cut(s) 476, 488
AlwNI CAGNNNCTG 1 cut(s) 35
Aor13HI TCCGGA 1 cut(s) 763
AoxI GGCC 2 cut(s) 986, 1186
ApeKI GCWGC 6 cut(s) 29, 35, 294, 511, 976, 1335
ApoI RAATTY 4 cut(s) 104, 118, 522, 995
ArsI GACNNNNNNTTYG 2 cut(s) 1033, 1065
AseI ATTAAT 1 cut(s) 894
Asp700I GAANNNNTTC 3 cut(s) 118, 121, 969
AspLEI GCGC 1 cut(s) 658
AspS9I GGNCC 1 cut(s) 335
AsuHPI GGTGA 4 cut(s) 875, 881, 1019, 1267
AvaII GGWCC 1 cut(s) 335
AxyI CCTNAGG 1 cut(s) 1077
BaeGI GKGCMC 1 cut(s) 1405
BaeI ACNNNNGTAYC 2 cut(s) 333, 366
BalI TGGCCA 1 cut(s) 1188
BanI GGYRCC 3 cut(s) 277, 701, 1400
BbsI GAAGAC 1 cut(s) 1155
BbvCI CCTCAGC 1 cut(s) 1293
BbvI GCAGC 6 cut(s) 22, 41, 306, 523, 963, 1322
BccI CCATC 9 cut(s) 263, 276, 556, 768, 768, 815, 860, 1029, 1178
BceAI ACGGC 1 cut(s) 694
BciT130I CCWGG 1 cut(s) 861
BciVI GTATCC 2 cut(s) 334, 1075
BclI TGATCA 2 cut(s) 829, 1105
BcoDI GTCTC 2 cut(s) 71, 470
BcuI ACTAGT 1 cut(s) 1379
BfaI CTAG 2 cut(s) 920, 1380
BfuI GTATCC 2 cut(s) 334, 1075
BglI GCCNNNNNGGC 1 cut(s) 985
BisI GCNGC 9 cut(s) 30, 33, 36, 39, 42, 295, 512, 977, 1336
BlsI GCNGC 9 cut(s) 31, 34, 37, 40, 43, 296, 513, 978, 1337
BmcAI AGTACT 2 cut(s) 367, 1330
Bme1390I CCNGG 1 cut(s) 861
Bme18I GGWCC 1 cut(s) 335
BmeRI GACNNNNNGTC 1 cut(s) 604
BmgBI CACGTC 1 cut(s) 542
BmgT120I GGNCC 1 cut(s) 335
BmiI GGNNCC 5 cut(s) 279, 382, 703, 966, 1402
BmrFI CCNGG 1 cut(s) 861
BmsI GCATC 1 cut(s) 643
BpiI GAAGAC 1 cut(s) 1155
BpmI CTGGAG 1 cut(s) 402
Bpu10I CCTNAGC 1 cut(s) 1293
BpuEI CTTGAG 2 cut(s) 161, 1259
Bsa29I ATCGAT 1 cut(s) 1012
BsaAI YACGTR 1 cut(s) 1091
BsaHI GRCGYC 2 cut(s) 372, 1209
BsaJI CCNNGG 3 cut(s) 662, 1030, 1302
BsaWI WCCGGW 3 cut(s) 337, 734, 763
Bsc4I CCNNNNNNNGG 7 cut(s) 274, 290, 718, 770, 796, 797, 866
Bse1I ACTGG 4 cut(s) 71, 373, 419, 644
Bse21I CCTNAGG 1 cut(s) 1077
BseAI TCCGGA 1 cut(s) 763
BseBI CCWGG 1 cut(s) 861
BseCI ATCGAT 1 cut(s) 1012
BseDI CCNNGG 3 cut(s) 662, 1030, 1302
BseGI GGATG 5 cut(s) 640, 658, 760, 779, 1040
BseLI CCNNNNNNNGG 7 cut(s) 274, 290, 718, 770, 796, 797, 866
BseMII CTCAG 2 cut(s) 1068, 1284
BseNI ACTGG 4 cut(s) 71, 373, 419, 644
BseRI GAGGAG 2 cut(s) 164, 233
BseSI GKGCMC 1 cut(s) 1405
BseXI GCAGC 6 cut(s) 22, 41, 306, 523, 963, 1322
Bsh1236I CGCG 1 cut(s) 755
BshFI GGCC 2 cut(s) 988, 1188
BshNI GGYRCC 3 cut(s) 277, 701, 1400
BshVI ATCGAT 1 cut(s) 1012
BsiSI CCGG 3 cut(s) 338, 735, 764
BslI CCNNNNNNNGG 7 cut(s) 274, 290, 718, 770, 796, 797, 866
BsmAI GTCTC 2 cut(s) 71, 470
BsmBI CGTCTC 1 cut(s) 71
BsnI GGCC 2 cut(s) 988, 1188
Bsp1286I GDGCHC 1 cut(s) 1405
Bsp13I TCCGGA 1 cut(s) 763
Bsp1407I TGTACA 2 cut(s) 741, 938
Bsp143I GATC 5 cut(s) 481, 493, 829, 1009, 1105
Bsp19I CCATGG 1 cut(s) 1302
BspACI CCGC 3 cut(s) 32, 38, 41
BspANI GGCC 2 cut(s) 988, 1188
BspCNI CTCAG 2 cut(s) 1069, 1285
BspDI ATCGAT 1 cut(s) 1012
BspEI TCCGGA 1 cut(s) 763
BspFNI CGCG 1 cut(s) 755
BspLI GGNNCC 5 cut(s) 279, 382, 703, 966, 1402
BspPI GGATC 2 cut(s) 476, 488
BspT107I GGYRCC 3 cut(s) 277, 701, 1400
BsrGI TGTACA 2 cut(s) 741, 938
BsrI ACTGG 4 cut(s) 71, 373, 419, 644
BssECI CCNNGG 3 cut(s) 662, 1030, 1302
BssMI GATC 5 cut(s) 481, 493, 829, 1009, 1105
BssNI GRCGYC 2 cut(s) 372, 1209
BssT1I CCWWGG 3 cut(s) 662, 1030, 1302
Bst2UI CCWGG 1 cut(s) 861
Bst4CI ACNGT 3 cut(s) 346, 602, 916
Bst6I CTCTTC 2 cut(s) 975, 1354
BstACI GRCGYC 2 cut(s) 372, 1209
BstAPI GCANNNNNTGC 1 cut(s) 35
BstAUI TGTACA 2 cut(s) 741, 938
BstBAI YACGTR 1 cut(s) 1091
BstC8I GCNNGC 2 cut(s) 61, 700
BstDEI CTNAG 4 cut(s) 452, 1077, 1293, 1325
BstDSI CCRYGG 1 cut(s) 1302
BstF5I GGATG 5 cut(s) 640, 658, 760, 779, 1040
BstFNI CGCG 1 cut(s) 755
BstHHI GCGC 1 cut(s) 658
BstKTI GATC 5 cut(s) 484, 496, 832, 1012, 1108
BstMAI GTCTC 2 cut(s) 71, 470
BstMBI GATC 5 cut(s) 481, 493, 829, 1009, 1105
BstMWI GCNNNNNNNGC 5 cut(s) 35, 38, 41, 378, 985
BstNI CCWGG 1 cut(s) 861
BstNSI RCATGY 5 cut(s) 97, 362, 748, 934, 945
BstSCI CCNGG 1 cut(s) 859
BstSLI GKGCMC 1 cut(s) 1405
BstUI CGCG 1 cut(s) 755
BstV1I GCAGC 6 cut(s) 22, 41, 306, 523, 963, 1322
BstV2I GAAGAC 1 cut(s) 1155
BstX2I RGATCY 2 cut(s) 481, 493
BstXI CCANNNNNNTGG 1 cut(s) 898
BstYI RGATCY 2 cut(s) 481, 493
Bsu15I ATCGAT 1 cut(s) 1012
Bsu36I CCTNAGG 1 cut(s) 1077
BsuI GTATCC 2 cut(s) 334, 1075
BsuRI GGCC 2 cut(s) 988, 1188
BsuTUI ATCGAT 1 cut(s) 1012
BtgI CCRYGG 1 cut(s) 1302
BtgZI GCGATG 1 cut(s) 312
BtrI CACGTC 1 cut(s) 542
BtsCI GGATG 5 cut(s) 640, 658, 760, 779, 1040
Cac8I GCNNGC 2 cut(s) 61, 700
CaiI CAGNNNCTG 1 cut(s) 35
CfoI GCGC 1 cut(s) 658
Cfr13I GGNCC 1 cut(s) 335
ClaI ATCGAT 1 cut(s) 1012
CseI GACGC 3 cut(s) 361, 761, 1217
Csp6I GTAC 8 cut(s) 223, 366, 422, 742, 917, 939, 1329, 1383
CspCI CAANNNNNGTGG 2 cut(s) 917, 952
CviQI GTAC 8 cut(s) 223, 366, 422, 742, 917, 939, 1329, 1383
DdeI CTNAG 4 cut(s) 452, 1077, 1293, 1325
DpnI GATC 5 cut(s) 483, 495, 831, 1011, 1107
DpnII GATC 5 cut(s) 481, 493, 829, 1009, 1105
DriI GACNNNNNGTC 1 cut(s) 604
EaeI YGGCCR 1 cut(s) 1186
Eam1104I CTCTTC 2 cut(s) 975, 1354
Eam1105I GACNNNNNGTC 1 cut(s) 604
EarI CTCTTC 2 cut(s) 975, 1354
Eco130I CCWWGG 3 cut(s) 662, 1030, 1302
Eco47I GGWCC 1 cut(s) 335
Eco57I CTGAAG 1 cut(s) 956
Eco81I CCTNAGG 1 cut(s) 1077
EcoRI GAATTC 1 cut(s) 104
EcoRII CCWGG 1 cut(s) 859
EcoT14I CCWWGG 3 cut(s) 662, 1030, 1302
ErhI CCWWGG 3 cut(s) 662, 1030, 1302
Esp3I CGTCTC 1 cut(s) 71
FalI AAGNNNNNCTT 4 cut(s) 106, 138, 1035, 1067
FbaI TGATCA 2 cut(s) 829, 1105
FblI GTMKAC 1 cut(s) 538
Fnu4HI GCNGC 9 cut(s) 30, 33, 36, 39, 42, 295, 512, 977, 1336
FokI GGATG 5 cut(s) 647, 665, 747, 786, 1047
Fsp4HI GCNGC 9 cut(s) 30, 33, 36, 39, 42, 295, 512, 977, 1336
FspBI CTAG 2 cut(s) 920, 1380
GlaI GCGC 1 cut(s) 657
GluI GCNGC 9 cut(s) 30, 33, 36, 39, 42, 295, 512, 977, 1336
GsuI CTGGAG 1 cut(s) 402
HaeIII GGCC 2 cut(s) 988, 1188
HapII CCGG 3 cut(s) 338, 735, 764
HgaI GACGC 3 cut(s) 361, 761, 1217
HhaI GCGC 1 cut(s) 658
Hin1I GRCGYC 2 cut(s) 372, 1209
Hin6I GCGC 1 cut(s) 656
HinP1I GCGC 1 cut(s) 656
HincII GTYRAC 1 cut(s) 51
HindII GTYRAC 1 cut(s) 51
HindIII AAGCTT 1 cut(s) 184
HinfI GANTC 7 cut(s) 168, 605, 947, 1067, 1298, 1357, 1370
HpaI GTTAAC 1 cut(s) 51
HpaII CCGG 3 cut(s) 338, 735, 764
HphI GGTGA 4 cut(s) 875, 881, 1019, 1267
Hpy166II GTNNAC 6 cut(s) 51, 225, 335, 539, 545, 742
Hpy188I TCNGA 6 cut(s) 103, 260, 732, 1126, 1216, 1377
Hpy188III TCNNGA 5 cut(s) 650, 764, 1007, 1205, 1361
Hpy8I GTNNAC 6 cut(s) 51, 225, 335, 539, 545, 742
Hpy99I CGWCG 4 cut(s) 377, 380, 1142, 1211
HpyAV CCTTC 3 cut(s) 525, 934, 1131
HpyCH4III ACNGT 3 cut(s) 346, 602, 916
HpyCH4IV ACGT 3 cut(s) 47, 541, 1090
HpyCH4V TGCA 4 cut(s) 17, 511, 692, 698
HpyF10VI GCNNNNNNNGC 5 cut(s) 35, 38, 41, 378, 985
HpyF3I CTNAG 4 cut(s) 452, 1077, 1293, 1325
HpySE526I ACGT 3 cut(s) 47, 541, 1090
Hsp92I GRCGYC 2 cut(s) 372, 1209
HspAI GCGC 1 cut(s) 656
Kpn2I TCCGGA 1 cut(s) 763
Ksp22I TGATCA 2 cut(s) 829, 1105
KspAI GTTAAC 1 cut(s) 51
Kzo9I GATC 5 cut(s) 481, 493, 829, 1009, 1105
LmnI GCTCC 1 cut(s) 386
Lsp1109I GCAGC 6 cut(s) 22, 41, 306, 523, 963, 1322
LweI GCATC 1 cut(s) 643
MaeI CTAG 2 cut(s) 920, 1380
MaeII ACGT 3 cut(s) 47, 541, 1090
MaeIII GTNAC 3 cut(s) 198, 596, 1247
MalI GATC 5 cut(s) 483, 495, 831, 1011, 1107
MboI GATC 5 cut(s) 481, 493, 829, 1009, 1105
MfeI CAATTG 1 cut(s) 693
MflI RGATCY 2 cut(s) 481, 493
MhlI GDGCHC 1 cut(s) 1405
MlsI TGGCCA 1 cut(s) 1188
MluNI TGGCCA 1 cut(s) 1188
MlyI GAGTC 1 cut(s) 614
Mox20I TGGCCA 1 cut(s) 1188
MroI TCCGGA 1 cut(s) 763
MroXI GAANNNNTTC 3 cut(s) 118, 121, 969
MscI TGGCCA 1 cut(s) 1188
MseI TTAA 8 cut(s) 50, 189, 263, 528, 894, 953, 1224, 1341
MslI CAYNNNNRTG 1 cut(s) 1194
Msp20I TGGCCA 1 cut(s) 1188
MspA1I CMGCKG 2 cut(s) 32, 976
MspI CCGG 3 cut(s) 338, 735, 764
MspR9I CCNGG 1 cut(s) 861
MunI CAATTG 1 cut(s) 693
MvaI CCWGG 1 cut(s) 861
MvnI CGCG 1 cut(s) 755
MwoI GCNNNNNNNGC 5 cut(s) 35, 38, 41, 378, 985
NcoI CCATGG 1 cut(s) 1302
NdeII GATC 5 cut(s) 481, 493, 829, 1009, 1105
NlaIV GGNNCC 5 cut(s) 279, 382, 703, 966, 1402
NmuCI GTSAC 3 cut(s) 198, 596, 1247
NspI RCATGY 5 cut(s) 97, 362, 748, 934, 945
PciI ACATGT 4 cut(s) 358, 744, 930, 941
PdmI GAANNNNTTC 3 cut(s) 118, 121, 969
PfeI GAWTC 6 cut(s) 168, 947, 1067, 1298, 1357, 1370
PflMI CCANNNNNTGG 2 cut(s) 274, 290
PkrI GCNGC 9 cut(s) 31, 34, 37, 40, 43, 296, 513, 978, 1337
PleI GAGTC 1 cut(s) 613
PpsI GAGTC 1 cut(s) 613
Ppu21I YACGTR 1 cut(s) 1091
PscI ACATGT 4 cut(s) 358, 744, 930, 941
PshBI ATTAAT 1 cut(s) 894
Psp6I CCWGG 1 cut(s) 859
PspGI CCWGG 1 cut(s) 859
PspN4I GGNNCC 5 cut(s) 279, 382, 703, 966, 1402
PspPI GGNCC 1 cut(s) 335
PstNI CAGNNNCTG 1 cut(s) 35
PsuI RGATCY 2 cut(s) 481, 493
PvuII CAGCTG 1 cut(s) 976
RsaI GTAC 8 cut(s) 224, 367, 423, 743, 918, 940, 1330, 1384
RsaNI GTAC 8 cut(s) 223, 366, 422, 742, 917, 939, 1329, 1383
RseI CAYNNNNRTG 1 cut(s) 1194
SaqAI TTAA 8 cut(s) 50, 189, 263, 528, 894, 953, 1224, 1341
SatI GCNGC 9 cut(s) 30, 33, 36, 39, 42, 295, 512, 977, 1336
Sau3AI GATC 5 cut(s) 481, 493, 829, 1009, 1105
Sau96I GGNCC 1 cut(s) 335
ScaI AGTACT 2 cut(s) 367, 1330
SchI GAGTC 1 cut(s) 614
ScrFI CCNGG 1 cut(s) 861
SduI GDGCHC 1 cut(s) 1405
SfaNI GCATC 1 cut(s) 643
SinI GGWCC 1 cut(s) 335
SmiMI CAYNNNNRTG 1 cut(s) 1194
SmlI CTYRAG 2 cut(s) 140, 1238
SmoI CTYRAG 2 cut(s) 140, 1238
SpeI ACTAGT 1 cut(s) 1379
SsiI CCGC 3 cut(s) 32, 38, 41
SspI AATATT 1 cut(s) 446
SspMI CTAG 2 cut(s) 920, 1380
StyD4I CCNGG 1 cut(s) 859
StyI CCWWGG 3 cut(s) 662, 1030, 1302
TaaI ACNGT 3 cut(s) 346, 602, 916
TaiI ACGT 3 cut(s) 50, 544, 1093
TaqI TCGA 3 cut(s) 216, 612, 1012
TaqII GACCGA 1 cut(s) 1037
TatI WGTACW 5 cut(s) 222, 365, 741, 938, 1328
TauI GCSGC 3 cut(s) 35, 41, 44
TfiI GAWTC 6 cut(s) 168, 947, 1067, 1298, 1357, 1370
Tru1I TTAA 8 cut(s) 50, 189, 263, 528, 894, 953, 1224, 1341
Tru9I TTAA 8 cut(s) 50, 189, 263, 528, 894, 953, 1224, 1341
TseFI GTSAC 3 cut(s) 198, 596, 1247
TseI GCWGC 6 cut(s) 29, 35, 294, 511, 976, 1335
Tsp45I GTSAC 3 cut(s) 198, 596, 1247
TspDTI ATGAA 5 cut(s) 97, 320, 989, 1059, 1161
Van91I CCANNNNNTGG 2 cut(s) 274, 290
VpaK11BI GGWCC 1 cut(s) 335
VspI ATTAAT 1 cut(s) 894
XapI RAATTY 4 cut(s) 104, 118, 522, 995
XceI RCATGY 5 cut(s) 97, 362, 748, 934, 945
XmiI GTMKAC 1 cut(s) 538
XmnI GAANNNNTTC 3 cut(s) 118, 121, 969
XspI CTAG 2 cut(s) 920, 1380
ZrmI AGTACT 2 cut(s) 367, 1330
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.