RLG00000022034

RNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0001042
Physical Location & Seq
Reverse (-)
80152852 .. 80154147
1296 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000022034

Sequence Viewer

Length: 1296 bp
ATGTTTCCAGAATTAATCAGAAGGAATTCTACTATTCTAGCACCAACTACGGCGGAGGAGGAAGACAAGAAAGAAACCATGAAAGAAGAAAGCTTGAAGAGTAAGTCCCTCTACTTATGTTTTGAGCGGAGTAAAAATTGTCCCGACAATGCTCACGTTATTCAATCTATCGAATTGAGCCACTTATTGACAGCACCAACTGATGGTGATCATGGCGGCGATGAAATTAAGTTGAGGGAAGTTGCTTATAGATGCGGACCGGGCACGAGTGTTCCCGGCCGAATGATAAGTAGTGTCATCGGCTCCAAAATTATTTTCTCTGGTGGCAAGGTATACAATAGAAAGAAAAGCACTACTCCTCCCATTCCCATGGGGATTGCAAGCAAAGAAGTTTGTGTGTTTGAGACAGATCCAAGCATAGATCCAAACCCAAGATTGCAGCCCTCCCAAGTGTTTAAGACTAGTAGACCCGAACCTTTCCTTGTAGAGGTGGACGACAATCTTTATTGTTTTAGTGGTCCGAGTGACTCTGTGTCATTTGAGGTATTTGACAAGACACATGAGAGATGGTTGCCTCTAGATGCGCCTCCTCAGAGAAATCCGTACAGCTTCTGTCATGCAATAGCGGGAACCAAAATCTTACTCTGGGTAAAAAATCAGACTGGAGTATTCGGGTTTGACGTGACTCACCCAGAAAAAGGATGGACAAAGTTGGATTCTTGTTTGGGAAGCTGTATTCCATTTGTCAATGGCTATCATCAACTATTTCTCAAGTTGAAGCTTCATCGTGGTGACGTTAATGGTTTTCTAATGTTCTCCTGTAAGTTGGAACAACCTCAGACTGTCAGAGTCTTCCACATGTCACATGAATGTGATTCTTTGAAACCTATGGAACCTCTACAGCTGCCGAAATTGCCTCATAAATTTCCTAGACCAACACGATGTATGTTTTTCCACCTAGAAGATGAAAAAATTGGAATTGTTTTCTTCCGTGACCATCATGAGTATTATTATGAGGATTATGATTATTTTGATGGTGATGATGACTACGACTACCACGAGGAGGAGGAGGAGGAGGAGGAGGACGATGATGTGAACATGGAGGAGGAGGAGGAGGAGGAGGAGGATGTTAGCCGGGTGAGAATTCTTGTCATAATATTTGAATACGGAATTGCGGAGGAATCCATGGATATCAGGTACAAATTGCTCACTAGTCGCTGCCTGGAATACTGTCCCCACAACCCGGAAGAAGTTAGGAACACCACACCAATTCTCATGGGGGCCTATGTGATCTAA

Protein Analysis

432

Amino Acids

49.71

Weight (kDa)

4.93

Isoelectric Point (pI)

56.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 203
AccBSI CCGCTC 1 cut(s) 127
AccI GTMKAC 2 cut(s) 333, 466
AciI CCGC 6 cut(s) 53, 127, 216, 255, 626, 1175
AclWI GGATC 2 cut(s) 404, 416
AcoI YGGCCR 1 cut(s) 277
AcsI RAATTY 3 cut(s) 25, 923, 1143
AfaI GTAC 2 cut(s) 605, 1199
AfiI CCNNNNNNNGG 5 cut(s) 203, 487, 698, 1063, 1243
AflIII ACRYGT 1 cut(s) 858
AgsI TTSAA 5 cut(s) 97, 164, 778, 883, 1163
AhdI GACNNNNNGTC 1 cut(s) 532
AhlI ACTAGT 2 cut(s) 461, 1211
AjiI CACGTC 1 cut(s) 682
AjnI CCWGG 1 cut(s) 1221
AjuI GAANNNNNNNTTGG 2 cut(s) 299, 331
AluBI AGCT 5 cut(s) 93, 609, 732, 781, 904
AluI AGCT 5 cut(s) 93, 609, 732, 781, 904
Alw26I GTCTC 1 cut(s) 398
AlwI GGATC 2 cut(s) 404, 416
AlwNI CAGNNNCTG 1 cut(s) 612
AoxI GGCC 2 cut(s) 277, 1281
ApeKI GCWGC 3 cut(s) 439, 904, 1218
ApoI RAATTY 3 cut(s) 25, 923, 1143
AseI ATTAAT 1 cut(s) 14
Asp700I GAANNNNTTC 1 cut(s) 25
AspLEI GCGC 1 cut(s) 586
AspS9I GGNCC 3 cut(s) 257, 518, 1281
AsuC2I CCSGG 4 cut(s) 261, 276, 1136, 1244
AsuHPI GGTGA 5 cut(s) 218, 680, 803, 1049, 1150
AvaII GGWCC 2 cut(s) 257, 518
BaeGI GKGCMC 1 cut(s) 266
BarI GAAGNNNNNNTAC 2 cut(s) 13, 45
BauI CACGAG 2 cut(s) 265, 1058
BbsI GAAGAC 2 cut(s) 69, 844
BbvI GCAGC 3 cut(s) 451, 891, 1205
BccI CCATC 5 cut(s) 197, 561, 696, 1005, 1028
BceAI ACGGC 1 cut(s) 66
BciT130I CCWGG 1 cut(s) 1223
BclI TGATCA 1 cut(s) 208
BcnI CCSGG 4 cut(s) 261, 276, 1136, 1244
BcoDI GTCTC 1 cut(s) 398
BcuI ACTAGT 2 cut(s) 461, 1211
BfaI CTAG 6 cut(s) 38, 462, 578, 930, 959, 1212
BfmI CTRYAG 1 cut(s) 899
BisI GCNGC 4 cut(s) 217, 440, 905, 1219
BlsI GCNGC 4 cut(s) 218, 441, 906, 1220
Bme1390I CCNGG 5 cut(s) 261, 276, 1136, 1223, 1244
Bme18I GGWCC 2 cut(s) 257, 518
BmeRI GACNNNNNGTC 1 cut(s) 532
BmgBI CACGTC 1 cut(s) 682
BmgT120I GGNCC 3 cut(s) 257, 518, 1281
BmiI GGNNCC 4 cut(s) 304, 631, 894, 1282
BmrFI CCNGG 5 cut(s) 261, 276, 1136, 1223, 1244
BmsI GCATC 2 cut(s) 242, 571
BpiI GAAGAC 2 cut(s) 69, 844
BpmI CTGGAG 1 cut(s) 684
BpuEI CTTGAG 1 cut(s) 755
BpuMI CCSGG 4 cut(s) 261, 276, 1136, 1244
BsaBI GATNNNNATC 1 cut(s) 207
BsaJI CCNNGG 2 cut(s) 369, 1185
BsaXI ACNNNNNCTCC 2 cut(s) 343, 373
Bsc4I CCNNNNNNNGG 5 cut(s) 203, 487, 698, 1063, 1243
Bse1I ACTGG 1 cut(s) 667
Bse8I GATNNNNATC 1 cut(s) 207
BseBI CCWGG 1 cut(s) 1223
BseDI CCNNGG 2 cut(s) 369, 1185
BseGI GGATG 2 cut(s) 707, 1132
BseJI GATNNNNATC 1 cut(s) 207
BseLI CCNNNNNNNGG 5 cut(s) 203, 487, 698, 1063, 1243
BseMII CTCAG 2 cut(s) 605, 851
BseNI ACTGG 1 cut(s) 667
BseSI GKGCMC 1 cut(s) 266
BseX3I CGGCCG 1 cut(s) 277
BseXI GCAGC 3 cut(s) 451, 891, 1205
Bsh1285I CGRYCG 1 cut(s) 280
BshFI GGCC 2 cut(s) 279, 1283
BsiEI CGRYCG 1 cut(s) 280
BsiSI CCGG 4 cut(s) 260, 276, 1135, 1244
BslFI GGGAC 3 cut(s) 91, 126, 1218
BslI CCNNNNNNNGG 5 cut(s) 203, 487, 698, 1063, 1243
BsmAI GTCTC 1 cut(s) 398
BsmFI GGGAC 3 cut(s) 91, 126, 1218
BsnI GGCC 2 cut(s) 279, 1283
Bsp1286I GDGCHC 1 cut(s) 266
Bsp143I GATC 4 cut(s) 208, 409, 421, 1290
Bsp19I CCATGG 2 cut(s) 369, 1185
BspACI CCGC 6 cut(s) 53, 127, 216, 255, 626, 1175
BspANI GGCC 2 cut(s) 279, 1283
BspCNI CTCAG 2 cut(s) 604, 850
BspHI TCATGA 1 cut(s) 1000
BspLI GGNNCC 4 cut(s) 304, 631, 894, 1282
BspPI GGATC 2 cut(s) 404, 416
BsrBI CCGCTC 1 cut(s) 127
BsrI ACTGG 1 cut(s) 667
BssECI CCNNGG 2 cut(s) 369, 1185
BssMI GATC 4 cut(s) 208, 409, 421, 1290
BssNAI GTATAC 1 cut(s) 334
BssSI CACGAG 2 cut(s) 265, 1058
BssT1I CCWWGG 2 cut(s) 369, 1185
Bst1107I GTATAC 1 cut(s) 334
Bst2BI CACGAG 2 cut(s) 265, 1058
Bst2UI CCWGG 1 cut(s) 1223
Bst4CI ACNGT 2 cut(s) 844, 1232
Bst6I CTCTTC 1 cut(s) 92
BstC8I GCNNGC 1 cut(s) 382
BstDEI CTNAG 2 cut(s) 591, 837
BstDSI CCRYGG 2 cut(s) 369, 1185
BstENI CCTNNNNNAGG 1 cut(s) 485
BstF5I GGATG 2 cut(s) 707, 1132
BstHHI GCGC 1 cut(s) 586
BstKTI GATC 4 cut(s) 211, 412, 424, 1293
BstMAI GTCTC 1 cut(s) 398
BstMBI GATC 4 cut(s) 208, 409, 421, 1290
BstMCI CGRYCG 1 cut(s) 280
BstMWI GCNNNNNNNGC 2 cut(s) 261, 913
BstNI CCWGG 1 cut(s) 1223
BstNSI RCATGY 1 cut(s) 862
BstSCI CCNGG 5 cut(s) 259, 274, 1134, 1221, 1242
BstSFI CTRYAG 1 cut(s) 899
BstSLI GKGCMC 1 cut(s) 266
BstV1I GCAGC 3 cut(s) 451, 891, 1205
BstV2I GAAGAC 2 cut(s) 69, 844
BstX2I RGATCY 2 cut(s) 409, 421
BstXI CCANNNNNNTGG 1 cut(s) 370
BstYI RGATCY 2 cut(s) 409, 421
BstZ17I GTATAC 1 cut(s) 334
BstZI CGGCCG 1 cut(s) 277
BsuRI GGCC 2 cut(s) 279, 1283
BtgI CCRYGG 2 cut(s) 369, 1185
BtgZI GCGATG 1 cut(s) 234
BtrI CACGTC 1 cut(s) 682
BtsCI GGATG 2 cut(s) 707, 1132
Cac8I GCNNGC 1 cut(s) 382
CaiI CAGNNNCTG 1 cut(s) 612
CciI TCATGA 1 cut(s) 1000
CfoI GCGC 1 cut(s) 586
Cfr13I GGNCC 3 cut(s) 257, 518, 1281
CpoI CGGWCCG 1 cut(s) 257
Csp6I GTAC 2 cut(s) 604, 1198
CspI CGGWCCG 1 cut(s) 257
CviQI GTAC 2 cut(s) 604, 1198
DdeI CTNAG 2 cut(s) 591, 837
DpnI GATC 4 cut(s) 210, 411, 423, 1292
DpnII GATC 4 cut(s) 208, 409, 421, 1290
DriI GACNNNNNGTC 1 cut(s) 532
EaeI YGGCCR 1 cut(s) 277
EagI CGGCCG 1 cut(s) 277
Eam1104I CTCTTC 1 cut(s) 92
Eam1105I GACNNNNNGTC 1 cut(s) 532
EarI CTCTTC 1 cut(s) 92
EciI GGCGGA 1 cut(s) 68
EclXI CGGCCG 1 cut(s) 277
Eco130I CCWWGG 2 cut(s) 369, 1185
Eco32I GATATC 1 cut(s) 1192
Eco47I GGWCC 2 cut(s) 257, 518
Eco52I CGGCCG 1 cut(s) 277
EcoNI CCTNNNNNAGG 1 cut(s) 485
EcoO109I RGGNCCY 1 cut(s) 1281
EcoRI GAATTC 2 cut(s) 25, 1143
EcoRII CCWGG 1 cut(s) 1221
EcoRV GATATC 1 cut(s) 1192
EcoT14I CCWWGG 2 cut(s) 369, 1185
ErhI CCWWGG 2 cut(s) 369, 1185
FaqI GGGAC 3 cut(s) 91, 126, 1218
FauI CCCGC 1 cut(s) 619
FbaI TGATCA 1 cut(s) 208
FblI GTMKAC 2 cut(s) 333, 466
Fnu4HI GCNGC 4 cut(s) 217, 440, 905, 1219
FokI GGATG 2 cut(s) 714, 1139
Fsp4HI GCNGC 4 cut(s) 217, 440, 905, 1219
FspBI CTAG 6 cut(s) 38, 462, 578, 930, 959, 1212
GlaI GCGC 1 cut(s) 585
GluI GCNGC 4 cut(s) 217, 440, 905, 1219
GsuI CTGGAG 1 cut(s) 684
HaeIII GGCC 2 cut(s) 279, 1283
HapII CCGG 4 cut(s) 260, 276, 1135, 1244
HhaI GCGC 1 cut(s) 586
Hin6I GCGC 1 cut(s) 584
HinP1I GCGC 1 cut(s) 584
HindIII AAGCTT 2 cut(s) 91, 779
HinfI GANTC 6 cut(s) 527, 685, 716, 849, 875, 1181
HpaII CCGG 4 cut(s) 260, 276, 1135, 1244
HphI GGTGA 5 cut(s) 218, 680, 803, 1049, 1150
Hpy166II GTNNAC 4 cut(s) 334, 467, 493, 1096
Hpy188I TCNGA 6 cut(s) 20, 522, 594, 660, 840, 848
Hpy188III TCNNGA 4 cut(s) 8, 143, 578, 1001
Hpy8I GTNNAC 4 cut(s) 334, 467, 493, 1096
HpyAV CCTTC 1 cut(s) 15
HpyCH4III ACNGT 2 cut(s) 844, 1232
HpyCH4IV ACGT 3 cut(s) 156, 681, 795
HpyCH4V TGCA 3 cut(s) 380, 439, 620
HpyF10VI GCNNNNNNNGC 2 cut(s) 261, 913
HpyF3I CTNAG 2 cut(s) 591, 837
HpySE526I ACGT 3 cut(s) 156, 681, 795
HspAI GCGC 1 cut(s) 584
Ksp22I TGATCA 1 cut(s) 208
Kzo9I GATC 4 cut(s) 208, 409, 421, 1290
LmnI GCTCC 1 cut(s) 308
Lsp1109I GCAGC 3 cut(s) 451, 891, 1205
LweI GCATC 2 cut(s) 242, 571
MaeI CTAG 6 cut(s) 38, 462, 578, 930, 959, 1212
MaeII ACGT 3 cut(s) 156, 681, 795
MaeIII GTNAC 5 cut(s) 524, 682, 791, 861, 992
MalI GATC 4 cut(s) 210, 411, 423, 1292
MbiI CCGCTC 1 cut(s) 127
MboI GATC 4 cut(s) 208, 409, 421, 1290
MboII GAAGA 7 cut(s) 74, 98, 109, 844, 974, 979, 1259
MflI RGATCY 2 cut(s) 409, 421
MhlI GDGCHC 1 cut(s) 266
MlyI GAGTC 3 cut(s) 521, 679, 858
MmeI TCCRAC 2 cut(s) 693, 807
MroXI GAANNNNTTC 1 cut(s) 25
MseI TTAA 4 cut(s) 14, 228, 456, 798
MslI CAYNNNNRTG 4 cut(s) 368, 789, 868, 870
MspA1I CMGCKG 1 cut(s) 904
MspI CCGG 4 cut(s) 260, 276, 1135, 1244
MspR9I CCNGG 5 cut(s) 261, 276, 1136, 1223, 1244
MvaI CCWGG 1 cut(s) 1223
MwoI GCNNNNNNNGC 2 cut(s) 261, 913
NciI CCSGG 4 cut(s) 261, 276, 1136, 1244
NcoI CCATGG 2 cut(s) 369, 1185
NdeII GATC 4 cut(s) 208, 409, 421, 1290
NlaIV GGNNCC 4 cut(s) 304, 631, 894, 1282
NmuCI GTSAC 5 cut(s) 524, 682, 791, 861, 992
NspI RCATGY 1 cut(s) 862
PagI TCATGA 1 cut(s) 1000
PciI ACATGT 1 cut(s) 858
PcsI WCGNNNNNNNCGW 2 cut(s) 678, 1056
PdmI GAANNNNTTC 1 cut(s) 25
PfeI GAWTC 3 cut(s) 716, 875, 1181
PflMI CCANNNNNTGG 1 cut(s) 203
PkrI GCNGC 4 cut(s) 218, 441, 906, 1220
PleI GAGTC 3 cut(s) 521, 679, 857
PpsI GAGTC 3 cut(s) 521, 679, 857
PscI ACATGT 1 cut(s) 858
PshBI ATTAAT 1 cut(s) 14
Psp6I CCWGG 1 cut(s) 1221
PspGI CCWGG 1 cut(s) 1221
PspN4I GGNNCC 4 cut(s) 304, 631, 894, 1282
PspPI GGNCC 3 cut(s) 257, 518, 1281
PstNI CAGNNNCTG 1 cut(s) 612
PsuI RGATCY 2 cut(s) 409, 421
PvuII CAGCTG 1 cut(s) 904
RsaI GTAC 2 cut(s) 605, 1199
RsaNI GTAC 2 cut(s) 604, 1198
RseI CAYNNNNRTG 4 cut(s) 368, 789, 868, 870
Rsr2I CGGWCCG 1 cut(s) 257
RsrII CGGWCCG 1 cut(s) 257
SaqAI TTAA 4 cut(s) 14, 228, 456, 798
SatI GCNGC 4 cut(s) 217, 440, 905, 1219
Sau3AI GATC 4 cut(s) 208, 409, 421, 1290
Sau96I GGNCC 3 cut(s) 257, 518, 1281
SchI GAGTC 3 cut(s) 521, 679, 858
ScrFI CCNGG 5 cut(s) 261, 276, 1136, 1223, 1244
SduI GDGCHC 1 cut(s) 266
SfaNI GCATC 2 cut(s) 242, 571
SfcI CTRYAG 1 cut(s) 899
SinI GGWCC 2 cut(s) 257, 518
SmiMI CAYNNNNRTG 4 cut(s) 368, 789, 868, 870
SmlI CTYRAG 1 cut(s) 770
SmoI CTYRAG 1 cut(s) 770
SpeI ACTAGT 2 cut(s) 461, 1211
SsiI CCGC 6 cut(s) 53, 127, 216, 255, 626, 1175
SspI AATATT 1 cut(s) 1158
SspMI CTAG 6 cut(s) 38, 462, 578, 930, 959, 1212
StyD4I CCNGG 5 cut(s) 259, 274, 1134, 1221, 1242
StyI CCWWGG 2 cut(s) 369, 1185
TaaI ACNGT 2 cut(s) 844, 1232
TaiI ACGT 3 cut(s) 159, 684, 798
TaqI TCGA 1 cut(s) 171
TauI GCSGC 1 cut(s) 219
TfiI GAWTC 3 cut(s) 716, 875, 1181
Tru1I TTAA 4 cut(s) 14, 228, 456, 798
Tru9I TTAA 4 cut(s) 14, 228, 456, 798
TseFI GTSAC 5 cut(s) 524, 682, 791, 861, 992
TseI GCWGC 3 cut(s) 439, 904, 1218
Tsp45I GTSAC 5 cut(s) 524, 682, 791, 861, 992
TspDTI ATGAA 5 cut(s) 95, 237, 773, 882, 981
TspGWI ACGGA 3 cut(s) 591, 980, 1182
Van91I CCANNNNNTGG 1 cut(s) 203
VpaK11BI GGWCC 2 cut(s) 257, 518
VspI ATTAAT 1 cut(s) 14
XagI CCTNNNNNAGG 1 cut(s) 485
XapI RAATTY 3 cut(s) 25, 923, 1143
XbaI TCTAGA 1 cut(s) 577
XceI RCATGY 1 cut(s) 862
XcmI CCANNNNNNNNNTGG 1 cut(s) 699
XmiI GTMKAC 2 cut(s) 333, 466
XmnI GAANNNNTTC 1 cut(s) 25
XspI CTAG 6 cut(s) 38, 462, 578, 930, 959, 1212
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.