RLG00000022083

RNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0001042
Physical Location & Seq
Forward (+)
80777400 .. 80778809
1410 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000022083

Sequence Viewer

Length: 1410 bp
ATGGCGTGGTGTAGACGGCGGTGTATTGCGATGTTGGGAGATTTTGTAACTAGAAAAACAGTGGCGGCAGCAACGTCAACGATAGCAAGCAACTGGGAGAAGGAGACGAAGAAAATTAGCATGTTTTCTGAATTAATCAGAAGAAATTCTACTACTTTATCACCACTTATGGAGGAGGAGAAAGACAAGAAAGGAACCATGAAAGAAGAAATATTGAAGAGTAAGTCTCTCTACTTATGTTTTGAGGAGCAGATAACTTGTTGTAACATCGCTCACGTTATTCAATCTATCGAATTGAGCCACGTGTTGGCAGCACCAACTGATGGTGATCATTGCTGCGATGAACTTAAGTTAGCTGAAGTTGCTTATAGATTCGGACCGGACACTTATGTTCCCCGCATGATGAGCAATAGTGTCATCGGCTCCAAAATTATTTTCTCCGGTGGCGTGGTTTTTAACAGAAATGAAAGCGATATTAATCGAATGCCCGAGATGATTTTAAGTAAAGAAGTTTGTGCGTTTGAGACAGATCCAAGCGTAGATCTGAACCCGACATTGCAGCCCTCCCAAGCATTTAAGACTAGTAGACCCGATCCCTTCCTAGTAGAGGTAGCCGGCGAACTATATTGTTTCGGTGGCCCATGTTACTCCGAGTCCTTCGAGGTATTTGACAAGACACATGAAAAATGGTTGCCTCTGGATGTCCCTCCTCAGAGATATCCCTACAGGGACATCTGTCATGCAATTTTAGGAAACAAAATGTTACTCTGGGTAAAAAATCAGACCGGAGTATTCGGGTTTGACGTCACTCAACCTGGAAAAGGATGGACAGAGTTGGACTCTTGTCTGGGAAGCTGCATTCCCTGTGTTAATGGTTATGATCAACTATTTGTCAAGTTGAAGTCTCATCGTGGTGATGGTTTTCTAATGTTCTCCTGTAATTTAGAACAACCTCAGACTGTTAGAGTCTTTCAAATTTCACATGAATGTGATTCTATGAAACCTATGGAACCTCTGCAGCTGCCAAAATTGCCTCATCAATTTCCTGTACCAACACGATGTCAGTTTTTTCATCTAGAAGATAATAAAGTCGGCCTTGTTTTCTTCCGTGACCGTCGTGAGTATTTTTATGAGGATTATGATTATTTTTCTCCTGGTGATGATGATGATGATGATGATGACGATGATGTGAACGAGGAAGAGCAGGGGGAAGAAGAGGATGAGGAGGAGGAGGATGAGGATGTTAGTAGGGTGAGAACTCTTGTCATAATATTCGAATACGAAATTGCAGAGAAATCCATGGACATCAAGTACAAGCTGCTCACCACTCGCTGCCTGGAATACTCTACCCACCCTCCTGAAGAAGGTAGGATCACGAGTTCAACCCTTATTGGCGCTTATGTGATCTAA

Protein Analysis

470

Amino Acids

53.8

Weight (kDa)

4.72

Isoelectric Point (pI)

51.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 807
AccB7I CCANNNNNTGG 2 cut(s) 307, 323
AccI GTMKAC 2 cut(s) 13, 586
AciI CCGC 3 cut(s) 19, 65, 397
AclWI GGATC 3 cut(s) 524, 587, 1379
AcsI RAATTY 2 cut(s) 145, 975
AcuI CTGAAG 2 cut(s) 378, 1380
AcvI CACGTG 1 cut(s) 304
AcyI GRCGYC 1 cut(s) 804
AfaI GTAC 2 cut(s) 1050, 1313
AfiI CCNNNNNNNGG 5 cut(s) 307, 323, 607, 821, 1364
AflII CTTAAG 1 cut(s) 347
AflIII ACRYGT 1 cut(s) 303
AgsI TTSAA 5 cut(s) 217, 284, 901, 974, 1383
AhlI ACTAGT 1 cut(s) 581
AjnI CCWGG 3 cut(s) 814, 1153, 1335
AjuI GAANNNNNNNTTGG 2 cut(s) 419, 451
AloI GAACNNNNNNTCC 2 cut(s) 1363, 1395
AluBI AGCT 4 cut(s) 356, 855, 1021, 1318
AluI AGCT 4 cut(s) 356, 855, 1021, 1318
Alw26I GTCTC 4 cut(s) 98, 231, 518, 909
AlwI GGATC 3 cut(s) 524, 587, 1379
Ama87I CYCGRG 1 cut(s) 488
AoxI GGCC 2 cut(s) 637, 1093
ApeKI GCWGC 9 cut(s) 68, 311, 336, 559, 855, 1018, 1021, 1318, 1332
ApoI RAATTY 2 cut(s) 145, 975
AseI ATTAAT 2 cut(s) 134, 477
Asp700I GAANNNNTTC 1 cut(s) 145
AspLEI GCGC 1 cut(s) 1397
AspS9I GGNCC 2 cut(s) 377, 638
AsuHPI GGTGA 6 cut(s) 153, 338, 926, 1169, 1264, 1315
AsuII TTCGAA 1 cut(s) 1275
AvaI CYCGRG 1 cut(s) 488
AvaII GGWCC 1 cut(s) 377
BarI GAAGNNNNNNTAC 2 cut(s) 133, 165
BauI CACGAG 1 cut(s) 1375
BbrPI CACGTG 1 cut(s) 304
BbvI GCAGC 9 cut(s) 80, 323, 323, 571, 842, 1008, 1030, 1305, 1319
BccI CCATC 3 cut(s) 317, 819, 911
BceAI ACGGC 1 cut(s) 32
BciT130I CCWGG 3 cut(s) 816, 1155, 1337
BclI TGATCA 2 cut(s) 328, 880
BcoDI GTCTC 4 cut(s) 98, 231, 518, 909
BcuI ACTAGT 1 cut(s) 581
BfaI CTAG 4 cut(s) 51, 582, 602, 1076
BfmI CTRYAG 2 cut(s) 724, 1016
BfoI RGCGCY 1 cut(s) 1398
BfrI CTTAAG 1 cut(s) 347
BglII AGATCT 1 cut(s) 541
Bme1390I CCNGG 3 cut(s) 816, 1155, 1337
Bme18I GGWCC 1 cut(s) 377
BmeT110I CYCGRG 1 cut(s) 488
BmgT120I GGNCC 2 cut(s) 377, 638
BmiI GGNNCC 3 cut(s) 196, 424, 1011
BmrFI CCNGG 3 cut(s) 816, 1155, 1337
BmrI ACTGGG 1 cut(s) 103
BmuI ACTGGG 1 cut(s) 103
BoxI GACNNNNGTC 2 cut(s) 735, 843
BplI GAGNNNNNCTC 4 cut(s) 211, 243, 824, 856
Bpu14I TTCGAA 1 cut(s) 1275
BsaAI YACGTR 1 cut(s) 304
BsaBI GATNNNNATC 2 cut(s) 327, 477
BsaHI GRCGYC 1 cut(s) 804
BsaJI CCNNGG 1 cut(s) 1299
BsaWI WCCGGW 3 cut(s) 379, 440, 785
BsaXI ACNNNNNCTCC 4 cut(s) 30, 60, 1339, 1369
Bsc4I CCNNNNNNNGG 5 cut(s) 307, 323, 607, 821, 1364
Bse118I RCCGGY 1 cut(s) 614
Bse1I ACTGG 1 cut(s) 98
Bse3DI GCAATG 2 cut(s) 331, 554
Bse8I GATNNNNATC 2 cut(s) 327, 477
BseBI CCWGG 3 cut(s) 816, 1155, 1337
BseDI CCNNGG 1 cut(s) 1299
BseGI GGATG 5 cut(s) 706, 830, 1225, 1240, 1246
BseJI GATNNNNATC 2 cut(s) 327, 477
BseLI CCNNNNNNNGG 5 cut(s) 307, 323, 607, 821, 1364
BseMI GCAATG 2 cut(s) 331, 554
BseMII CTCAG 2 cut(s) 725, 968
BseNI ACTGG 1 cut(s) 98
BseRI GAGGAG 7 cut(s) 188, 191, 260, 699, 1238, 1241, 1244
BseXI GCAGC 9 cut(s) 80, 323, 323, 571, 842, 1008, 1030, 1305, 1319
BshFI GGCC 2 cut(s) 639, 1095
BsiHKCI CYCGRG 1 cut(s) 488
BsiSI CCGG 4 cut(s) 380, 441, 615, 786
BslFI GGGAC 2 cut(s) 689, 743
BslI CCNNNNNNNGG 5 cut(s) 307, 323, 607, 821, 1364
BsmAI GTCTC 4 cut(s) 98, 231, 518, 909
BsmBI CGTCTC 1 cut(s) 98
BsmFI GGGAC 2 cut(s) 689, 743
BsmI GAATGC 2 cut(s) 489, 858
BsnI GGCC 2 cut(s) 639, 1095
BsoBI CYCGRG 1 cut(s) 488
Bsp119I TTCGAA 1 cut(s) 1275
Bsp143I GATC 7 cut(s) 328, 529, 541, 592, 880, 1371, 1404
Bsp19I CCATGG 1 cut(s) 1299
BspACI CCGC 3 cut(s) 19, 65, 397
BspANI GGCC 2 cut(s) 639, 1095
BspCNI CTCAG 2 cut(s) 724, 967
BspLI GGNNCC 3 cut(s) 196, 424, 1011
BspMAI CTGCAG 1 cut(s) 1020
BspPI GGATC 3 cut(s) 524, 587, 1379
BspQI GCTCTTC 1 cut(s) 1194
BspT104I TTCGAA 1 cut(s) 1275
BspTI CTTAAG 1 cut(s) 347
BsrDI GCAATG 2 cut(s) 331, 554
BsrFI RCCGGY 1 cut(s) 614
BsrI ACTGG 1 cut(s) 98
BssAI RCCGGY 1 cut(s) 614
BssECI CCNNGG 1 cut(s) 1299
BssMI GATC 7 cut(s) 328, 529, 541, 592, 880, 1371, 1404
BssNI GRCGYC 1 cut(s) 804
BssSI CACGAG 1 cut(s) 1375
BssT1I CCWWGG 1 cut(s) 1299
Bst2BI CACGAG 1 cut(s) 1375
Bst2UI CCWGG 3 cut(s) 816, 1155, 1337
Bst4CI ACNGT 3 cut(s) 61, 961, 1115
Bst6I CTCTTC 3 cut(s) 212, 1194, 1209
BstACI GRCGYC 1 cut(s) 804
BstAFI CTTAAG 1 cut(s) 347
BstBAI YACGTR 1 cut(s) 304
BstBI TTCGAA 1 cut(s) 1275
BstC8I GCNNGC 2 cut(s) 88, 616
BstDEI CTNAG 2 cut(s) 711, 954
BstDSI CCRYGG 1 cut(s) 1299
BstENI CCTNNNNNAGG 3 cut(s) 605, 819, 1362
BstF5I GGATG 5 cut(s) 706, 830, 1225, 1240, 1246
BstH2I RGCGCY 1 cut(s) 1398
BstHHI GCGC 1 cut(s) 1397
BstKTI GATC 7 cut(s) 331, 532, 544, 595, 883, 1374, 1407
BstMAI GTCTC 4 cut(s) 98, 231, 518, 909
BstMBI GATC 7 cut(s) 328, 529, 541, 592, 880, 1371, 1404
BstMWI GCNNNNNNNGC 3 cut(s) 362, 405, 1030
BstNI CCWGG 3 cut(s) 816, 1155, 1337
BstNSI RCATGY 1 cut(s) 124
BstPAI GACNNNNGTC 2 cut(s) 735, 843
BstSCI CCNGG 3 cut(s) 814, 1153, 1335
BstSFI CTRYAG 2 cut(s) 724, 1016
BstV1I GCAGC 9 cut(s) 80, 323, 323, 571, 842, 1008, 1030, 1305, 1319
BstX2I RGATCY 2 cut(s) 529, 541
BstYI RGATCY 2 cut(s) 529, 541
BsuRI GGCC 2 cut(s) 639, 1095
BtgI CCRYGG 1 cut(s) 1299
BtgZI GCGATG 3 cut(s) 44, 253, 354
BtsCI GGATG 5 cut(s) 706, 830, 1225, 1240, 1246
BtsIMutI CAGTG 1 cut(s) 66
Cac8I GCNNGC 2 cut(s) 88, 616
CfoI GCGC 1 cut(s) 1397
Cfr10I RCCGGY 1 cut(s) 614
Cfr13I GGNCC 2 cut(s) 377, 638
CpoI CGGWCCG 1 cut(s) 377
Csp6I GTAC 2 cut(s) 1049, 1312
CspI CGGWCCG 1 cut(s) 377
CviAII CATG 8 cut(s) 121, 199, 400, 642, 680, 740, 983, 1300
CviQI GTAC 2 cut(s) 1049, 1312
DdeI CTNAG 2 cut(s) 711, 954
DpnI GATC 7 cut(s) 330, 531, 543, 594, 882, 1373, 1406
DpnII GATC 7 cut(s) 328, 529, 541, 592, 880, 1371, 1404
Eam1104I CTCTTC 3 cut(s) 212, 1194, 1209
EarI CTCTTC 3 cut(s) 212, 1194, 1209
Eco130I CCWWGG 1 cut(s) 1299
Eco32I GATATC 1 cut(s) 719
Eco47I GGWCC 1 cut(s) 377
Eco57I CTGAAG 2 cut(s) 378, 1380
Eco72I CACGTG 1 cut(s) 304
Eco88I CYCGRG 1 cut(s) 488
EcoNI CCTNNNNNAGG 3 cut(s) 605, 819, 1362
EcoRII CCWGG 3 cut(s) 814, 1153, 1335
EcoRV GATATC 1 cut(s) 719
EcoT14I CCWWGG 1 cut(s) 1299
ErhI CCWWGG 1 cut(s) 1299
Esp3I CGTCTC 1 cut(s) 98
FaeI CATG 8 cut(s) 124, 202, 403, 645, 683, 743, 986, 1303
FalI AAGNNNNNCTT 2 cut(s) 1080, 1112
FaqI GGGAC 2 cut(s) 689, 743
FatI CATG 8 cut(s) 120, 198, 399, 641, 679, 739, 982, 1299
FauI CCCGC 1 cut(s) 404
FbaI TGATCA 2 cut(s) 328, 880
FblI GTMKAC 2 cut(s) 13, 586
FokI GGATG 5 cut(s) 713, 837, 1232, 1247, 1253
FspBI CTAG 4 cut(s) 51, 582, 602, 1076
GlaI GCGC 1 cut(s) 1396
HaeII RGCGCY 1 cut(s) 1398
HaeIII GGCC 2 cut(s) 639, 1095
HapII CCGG 4 cut(s) 380, 441, 615, 786
HhaI GCGC 1 cut(s) 1397
Hin1I GRCGYC 1 cut(s) 804
Hin1II CATG 8 cut(s) 124, 202, 403, 645, 683, 743, 986, 1303
Hin6I GCGC 1 cut(s) 1395
HinP1I GCGC 1 cut(s) 1395
HincII GTYRAC 1 cut(s) 78
HindII GTYRAC 1 cut(s) 78
HinfI GANTC 5 cut(s) 372, 653, 839, 966, 992
HpaII CCGG 4 cut(s) 380, 441, 615, 786
HphI GGTGA 6 cut(s) 153, 338, 926, 1169, 1264, 1315
Hpy166II GTNNAC 4 cut(s) 14, 78, 587, 1192
Hpy188I TCNGA 8 cut(s) 130, 140, 377, 546, 652, 714, 783, 957
Hpy188III TCNNGA 5 cut(s) 698, 1076, 1118, 1358, 1375
Hpy8I GTNNAC 4 cut(s) 14, 78, 587, 1192
Hpy99I CGWCG 1 cut(s) 1119
HpyAV CCTTC 4 cut(s) 94, 607, 667, 1358
HpyCH4III ACNGT 3 cut(s) 61, 961, 1115
HpyCH4IV ACGT 4 cut(s) 74, 276, 303, 804
HpyCH4V TGCA 5 cut(s) 559, 743, 858, 1018, 1289
HpyF10VI GCNNNNNNNGC 3 cut(s) 362, 405, 1030
HpyF3I CTNAG 2 cut(s) 711, 954
HpySE526I ACGT 4 cut(s) 74, 276, 303, 804
Hsp92I GRCGYC 1 cut(s) 804
Hsp92II CATG 8 cut(s) 124, 202, 403, 645, 683, 743, 986, 1303
HspAI GCGC 1 cut(s) 1395
KroI GCCGGC 1 cut(s) 614
KroNI GCCGGC 1 cut(s) 616
Ksp22I TGATCA 2 cut(s) 328, 880
Kzo9I GATC 7 cut(s) 328, 529, 541, 592, 880, 1371, 1404
LguI GCTCTTC 1 cut(s) 1194
LmnI GCTCC 2 cut(s) 247, 428
Lsp1109I GCAGC 9 cut(s) 80, 323, 323, 571, 842, 1008, 1030, 1305, 1319
MaeI CTAG 4 cut(s) 51, 582, 602, 1076
MaeII ACGT 4 cut(s) 74, 276, 303, 804
MaeIII GTNAC 6 cut(s) 46, 263, 644, 762, 805, 1109
MalI GATC 7 cut(s) 330, 531, 543, 594, 882, 1373, 1406
MboI GATC 7 cut(s) 328, 529, 541, 592, 880, 1371, 1404
MflI RGATCY 2 cut(s) 529, 541
MlyI GAGTC 3 cut(s) 662, 833, 975
MmeI TCCRAC 1 cut(s) 816
MroNI GCCGGC 1 cut(s) 614
MroXI GAANNNNTTC 1 cut(s) 145
MseI TTAA 7 cut(s) 134, 348, 456, 477, 500, 576, 870
MslI CAYNNNNRTG 3 cut(s) 912, 985, 987
MspA1I CMGCKG 1 cut(s) 1021
MspCI CTTAAG 1 cut(s) 347
MspI CCGG 4 cut(s) 380, 441, 615, 786
MspR9I CCNGG 3 cut(s) 816, 1155, 1337
Mva1269I GAATGC 2 cut(s) 489, 858
MvaI CCWGG 3 cut(s) 816, 1155, 1337
MwoI GCNNNNNNNGC 3 cut(s) 362, 405, 1030
NaeI GCCGGC 1 cut(s) 616
NcoI CCATGG 1 cut(s) 1299
NdeII GATC 7 cut(s) 328, 529, 541, 592, 880, 1371, 1404
NgoMIV GCCGGC 1 cut(s) 614
NlaIII CATG 8 cut(s) 124, 202, 403, 645, 683, 743, 986, 1303
NlaIV GGNNCC 3 cut(s) 196, 424, 1011
NmuCI GTSAC 2 cut(s) 805, 1109
NspI RCATGY 1 cut(s) 124
NspV TTCGAA 1 cut(s) 1275
PciSI GCTCTTC 1 cut(s) 1194
PcsI WCGNNNNNNNCGW 1 cut(s) 801
PctI GAATGC 2 cut(s) 489, 858
PdiI GCCGGC 1 cut(s) 616
PdmI GAANNNNTTC 1 cut(s) 145
PfeI GAWTC 2 cut(s) 372, 992
PflMI CCANNNNNTGG 2 cut(s) 307, 323
PleI GAGTC 3 cut(s) 661, 833, 974
PmaCI CACGTG 1 cut(s) 304
PmlI CACGTG 1 cut(s) 304
PpsI GAGTC 3 cut(s) 661, 833, 974
Ppu21I YACGTR 1 cut(s) 304
PshAI GACNNNNGTC 2 cut(s) 735, 843
PshBI ATTAAT 2 cut(s) 134, 477
Psp6I CCWGG 3 cut(s) 814, 1153, 1335
PspCI CACGTG 1 cut(s) 304
PspGI CCWGG 3 cut(s) 814, 1153, 1335
PspN4I GGNNCC 3 cut(s) 196, 424, 1011
PspPI GGNCC 2 cut(s) 377, 638
PstI CTGCAG 1 cut(s) 1020
PsuI RGATCY 2 cut(s) 529, 541
PvuII CAGCTG 1 cut(s) 1021
RsaI GTAC 2 cut(s) 1050, 1313
RsaNI GTAC 2 cut(s) 1049, 1312
RseI CAYNNNNRTG 3 cut(s) 912, 985, 987
Rsr2I CGGWCCG 1 cut(s) 377
RsrII CGGWCCG 1 cut(s) 377
SapI GCTCTTC 1 cut(s) 1194
SaqAI TTAA 7 cut(s) 134, 348, 456, 477, 500, 576, 870
Sau3AI GATC 7 cut(s) 328, 529, 541, 592, 880, 1371, 1404
Sau96I GGNCC 2 cut(s) 377, 638
SchI GAGTC 3 cut(s) 662, 833, 975
ScrFI CCNGG 3 cut(s) 816, 1155, 1337
SfcI CTRYAG 2 cut(s) 724, 1016
SfuI TTCGAA 1 cut(s) 1275
SinI GGWCC 1 cut(s) 377
SmiMI CAYNNNNRTG 3 cut(s) 912, 985, 987
SmlI CTYRAG 1 cut(s) 347
SmoI CTYRAG 1 cut(s) 347
SpeI ACTAGT 1 cut(s) 581
SsiI CCGC 3 cut(s) 19, 65, 397
SspI AATATT 2 cut(s) 213, 1272
SspMI CTAG 4 cut(s) 51, 582, 602, 1076
StyD4I CCNGG 3 cut(s) 814, 1153, 1335
StyI CCWWGG 1 cut(s) 1299
TaaI ACNGT 3 cut(s) 61, 961, 1115
TaiI ACGT 4 cut(s) 77, 279, 306, 807
TaqI TCGA 4 cut(s) 291, 481, 660, 1275
TatI WGTACW 1 cut(s) 1311
TauI GCSGC 1 cut(s) 68
TfiI GAWTC 2 cut(s) 372, 992
Tru1I TTAA 7 cut(s) 134, 348, 456, 477, 500, 576, 870
Tru9I TTAA 7 cut(s) 134, 348, 456, 477, 500, 576, 870
TscAI CASTG 1 cut(s) 66
TseFI GTSAC 2 cut(s) 805, 1109
TseI GCWGC 9 cut(s) 68, 311, 336, 559, 855, 1018, 1021, 1318, 1332
Tsp45I GTSAC 2 cut(s) 805, 1109
TspDTI ATGAA 7 cut(s) 215, 357, 480, 696, 999, 1013, 1061
TspGWI ACGGA 1 cut(s) 1097
TspRI CASTG 1 cut(s) 66
Van91I CCANNNNNTGG 2 cut(s) 307, 323
Vha464I CTTAAG 1 cut(s) 347
VpaK11BI GGWCC 1 cut(s) 377
VspI ATTAAT 2 cut(s) 134, 477
XagI CCTNNNNNAGG 3 cut(s) 605, 819, 1362
XapI RAATTY 2 cut(s) 145, 975
XbaI TCTAGA 1 cut(s) 1075
XceI RCATGY 1 cut(s) 124
XcmI CCANNNNNNNNNTGG 1 cut(s) 1333
XmiI GTMKAC 2 cut(s) 13, 586
XmnI GAANNNNTTC 1 cut(s) 145
XspI CTAG 4 cut(s) 51, 582, 602, 1076
ZraI GACGTC 1 cut(s) 805
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.