Rh5BG331700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0001042
Physical Location & Seq
Forward (+)
46090242 .. 46090541
300 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG331700.1

Sequence Viewer

Length: 300 bp
ATGCATGTTATTCAATCCATCAGATTAAGCCATCTGTTGGCATCAACAATACATGGCGGCGATGATCTGAAATTACATAAAGTTGCTTATAGATGTGGACCGAAAATGGTTGTTCCCCTACATATGATAACTGGTGTCGTCGGCTCCAAAATTTTTTTCTCTGGTGGTAAGGTTGTACCGGAGAAAAAACCTTCTCATATTGTACAATATTCACTTACCAAAGAAGTTTGTGTGTTTGAGACAGATTTAAGCATAGATCCAAATTCGAGATTGCAGCCCTCCCCAAGTTTTCCAGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

99

Amino Acids

10.89

Weight (kDa)

9.03

Isoelectric Point (pI)

45.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 37
AciI CCGC 1 cut(s) 57
AclWI GGATC 1 cut(s) 251
AcsI RAATTY 2 cut(s) 150, 262
AfaI GTAC 2 cut(s) 177, 204
AfiI CCNNNNNNNGG 1 cut(s) 37
AgsI TTSAA 1 cut(s) 14
AjuI GAANNNNNNNTTGG 2 cut(s) 140, 172
Alw26I GTCTC 1 cut(s) 233
AlwI GGATC 1 cut(s) 251
ApeKI GCWGC 1 cut(s) 274
ApoI RAATTY 2 cut(s) 150, 262
AspS9I GGNCC 1 cut(s) 98
AvaII GGWCC 1 cut(s) 98
BbvI GCAGC 1 cut(s) 286
BccI CCATC 2 cut(s) 26, 39
BcoDI GTCTC 1 cut(s) 233
BisI GCNGC 2 cut(s) 58, 275
BlsI GCNGC 2 cut(s) 59, 276
Bme18I GGWCC 1 cut(s) 98
BmgT120I GGNCC 1 cut(s) 98
BmiI GGNNCC 1 cut(s) 145
BmsI GCATC 1 cut(s) 50
BsaWI WCCGGW 1 cut(s) 178
Bsc4I CCNNNNNNNGG 1 cut(s) 37
Bse1I ACTGG 1 cut(s) 136
BseLI CCNNNNNNNGG 1 cut(s) 37
BseNI ACTGG 1 cut(s) 136
BseXI GCAGC 1 cut(s) 286
BsiSI CCGG 1 cut(s) 179
BslI CCNNNNNNNGG 1 cut(s) 37
BsmAI GTCTC 1 cut(s) 233
Bsp1407I TGTACA 1 cut(s) 202
Bsp143I GATC 2 cut(s) 64, 256
BspACI CCGC 1 cut(s) 57
BspLI GGNNCC 1 cut(s) 145
BspPI GGATC 1 cut(s) 251
BsrGI TGTACA 1 cut(s) 202
BsrI ACTGG 1 cut(s) 136
BssMI GATC 2 cut(s) 64, 256
BstAUI TGTACA 1 cut(s) 202
BstKTI GATC 2 cut(s) 67, 259
BstMAI GTCTC 1 cut(s) 233
BstMBI GATC 2 cut(s) 64, 256
BstNSI RCATGY 1 cut(s) 8
BstV1I GCAGC 1 cut(s) 286
BstX2I RGATCY 1 cut(s) 256
BstYI RGATCY 1 cut(s) 256
BtgZI GCGATG 1 cut(s) 75
Cfr13I GGNCC 1 cut(s) 98
Csp6I GTAC 2 cut(s) 176, 203
CviAII CATG 2 cut(s) 5, 53
CviJI RGCY 3 cut(s) 30, 144, 277
CviKI_1 RGCY 3 cut(s) 30, 144, 277
CviQI GTAC 2 cut(s) 176, 203
DpnI GATC 2 cut(s) 66, 258
DpnII GATC 2 cut(s) 64, 256
Eco47I GGWCC 1 cut(s) 98
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 2 cut(s) 8, 56
FaiI YATR 8 cut(s) 6, 54, 78, 90, 123, 125, 198, 254
FatI CATG 2 cut(s) 4, 52
FauNDI CATATG 1 cut(s) 123
Fnu4HI GCNGC 2 cut(s) 58, 275
Fsp4HI GCNGC 2 cut(s) 58, 275
GluI GCNGC 2 cut(s) 58, 275
HapII CCGG 1 cut(s) 179
Hin1II CATG 2 cut(s) 8, 56
HpaII CCGG 1 cut(s) 179
Hpy166II GTNNAC 1 cut(s) 98
Hpy188I TCNGA 2 cut(s) 23, 69
Hpy188III TCNNGA 2 cut(s) 267, 293
Hpy8I GTNNAC 1 cut(s) 98
Hpy99I CGWCG 1 cut(s) 143
HpyAV CCTTC 1 cut(s) 201
HpyCH4V TGCA 2 cut(s) 4, 274
Hsp92II CATG 2 cut(s) 8, 56
Kzo9I GATC 2 cut(s) 64, 256
LmnI GCTCC 1 cut(s) 149
LpnPI CCDG 3 cut(s) 117, 147, 192
Lsp1109I GCAGC 1 cut(s) 286
LweI GCATC 1 cut(s) 50
MalI GATC 2 cut(s) 66, 258
MboI GATC 2 cut(s) 64, 256
MflI RGATCY 1 cut(s) 256
MluCI AATT 3 cut(s) 71, 150, 262
MnlI CCTC 1 cut(s) 289
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 2 cut(s) 26, 248
MspI CCGG 1 cut(s) 179
NdeI CATATG 1 cut(s) 123
NdeII GATC 2 cut(s) 64, 256
NlaIII CATG 2 cut(s) 8, 56
NlaIV GGNNCC 1 cut(s) 145
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 8
PflMI CCANNNNNTGG 1 cut(s) 37
PkrI GCNGC 2 cut(s) 59, 276
PspN4I GGNNCC 1 cut(s) 145
PspPI GGNCC 1 cut(s) 98
PsuI RGATCY 1 cut(s) 256
RsaI GTAC 2 cut(s) 177, 204
RsaNI GTAC 2 cut(s) 176, 203
SaqAI TTAA 2 cut(s) 26, 248
SatI GCNGC 2 cut(s) 58, 275
Sau3AI GATC 2 cut(s) 64, 256
Sau96I GGNCC 1 cut(s) 98
SetI ASST 2 cut(s) 174, 193
SfaNI GCATC 1 cut(s) 50
SgeI CNNG 6 cut(s) 17, 65, 144, 174, 191, 279
SinI GGWCC 1 cut(s) 98
Sse9I AATT 3 cut(s) 71, 150, 262
SsiI CCGC 1 cut(s) 57
SspI AATATT 1 cut(s) 209
TaqI TCGA 1 cut(s) 266
TaqII GACCGA 1 cut(s) 115
TasI AATT 3 cut(s) 71, 150, 262
TatI WGTACW 1 cut(s) 202
TauI GCSGC 1 cut(s) 60
Tru1I TTAA 2 cut(s) 26, 248
Tru9I TTAA 2 cut(s) 26, 248
TseI GCWGC 1 cut(s) 274
Van91I CCANNNNNTGG 1 cut(s) 37
VpaK11BI GGWCC 1 cut(s) 98
XapI RAATTY 2 cut(s) 150, 262
XceI RCATGY 1 cut(s) 8
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.