Rmu_sc0012468.1_g000010

Family of unknown function (DUF716)

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0012468.1
Physical Location & Seq
Reverse (-)
28899 .. 34326
5428 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0012468.1_g000010.1.cds

Sequence Viewer

Length: 1068 bp
atgagtatttttcatctagaagataataaagtcggccttgttttcttccgtgacagtcgtgagtatttttatgaggattatgattattttcctcctcttgatgatgatgatgatatgaggatcgaggaggaggaggaggagaaggaggatgttagcagggtgagaactcttgtcataatatttgaatacgaaattgcggagaaatccatcgacatcaagtacaaattgctcaccactcgctgcccggaatactctacctaccctcctgaagaagctccgatctctggtctagatggccggctgggagacgaggtcgacgatgacgtcgacggaggttatacatcggtgatgactcaatctcgagacggcgccgcctcgaatcgagctacatcatcaatgttacgtatcctccagtgctcgatctccggtgctcaactatctcccgtgctcaaccaggttgtggcagaggagaaagatgattgggtgcctagagcttttctctgggtgcccaaatcaatttttggcggcggcctgattctgatgggcacattcgaagccatctcctcctccaccctcgacccatctccaccgtccactcatccccagtcgaaaccgcaaatgacccagtccaaatcgtcgttcatctacttcctcctcgcatcccttctctccttcctcttcattctcaactcgttgatttctttcttcgacgccttaaactcaaacgatcgggtcgggtcggcccagcagctccaggtcctcgcgattgccgccctcttcttcctctactccatcaccggcctcctggtaaacttcaccaactcatctttcccttcttcgctgctcaatttgatcgttctcttcggtttcgttgaagaattcatgtacttttatcttcaaagaaaagacgctgctggaatcgagaatcgatactttgatctgctgctggtgccgattttcgtctgtgtcttctccacagttcttgaattgcacaaccctaaatcgttgcaaatcagcgaagcaagggtaacgcccttgcaacccagcgaagctaaagtcacgctttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

355

Amino Acids

40.03

Weight (kDa)

4.42

Isoelectric Point (pI)

52.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 323
AatII GACGTC 1 cut(s) 327
AccB1I GGYRCC 4 cut(s) 368, 484, 505, 949
AccB7I CCANNNNNTGG 1 cut(s) 460
AccI GTMKAC 2 cut(s) 315, 327
AccII CGCG 1 cut(s) 764
AciI CCGC 6 cut(s) 197, 372, 525, 528, 614, 771
AclWI GGATC 1 cut(s) 128
AcoI YGGCCR 1 cut(s) 295
AcsI RAATTY 1 cut(s) 878
AcuI CTGAAG 1 cut(s) 288
AcyI GRCGYC 3 cut(s) 324, 369, 711
AfaI GTAC 2 cut(s) 221, 887
AfiI CCNNNNNNNGG 2 cut(s) 284, 460
AgsI TTSAA 4 cut(s) 185, 875, 899, 986
AjnI CCWGG 3 cut(s) 453, 753, 804
AjuI GAANNNNNNNTTGG 4 cut(s) 623, 655, 812, 844
AluBI AGCT 5 cut(s) 275, 386, 494, 751, 1052
AluI AGCT 5 cut(s) 275, 386, 494, 751, 1052
Alw21I GWGCWC 3 cut(s) 419, 433, 450
Alw26I GTCTC 2 cut(s) 300, 357
AlwI GGATC 1 cut(s) 128
Ama87I CYCGRG 1 cut(s) 360
AoxI GGCC 5 cut(s) 34, 295, 529, 741, 799
ApeKI GCWGC 5 cut(s) 240, 748, 841, 911, 943
ApoI RAATTY 1 cut(s) 878
ArsI GACNNNNNNTTYG 1 cut(s) 1041
AspLEI GCGC 1 cut(s) 371
AspS9I GGNCC 2 cut(s) 742, 757
AsuC2I CCSGG 1 cut(s) 245
AsuHPI GGTGA 5 cut(s) 172, 223, 358, 787, 808
AsuII TTCGAA 1 cut(s) 552
AvaI CYCGRG 1 cut(s) 360
AvaII GGWCC 1 cut(s) 757
BaeGI GKGCMC 2 cut(s) 510, 548
BanI GGYRCC 4 cut(s) 368, 484, 505, 949
BbsI GAAGAC 1 cut(s) 961
Bbv12I GWGCWC 3 cut(s) 419, 433, 450
BbvI GCAGC 5 cut(s) 227, 760, 828, 898, 930
BccI CCATC 6 cut(s) 215, 287, 535, 566, 589, 800
BceAI ACGGC 1 cut(s) 382
BciT130I CCWGG 3 cut(s) 455, 755, 806
BciVI GTATCC 1 cut(s) 416
BcnI CCSGG 1 cut(s) 245
BcoDI GTCTC 2 cut(s) 300, 357
BfaI CTAG 3 cut(s) 17, 290, 489
BfoI RGCGCY 1 cut(s) 372
BfuI GTATCC 1 cut(s) 416
BisI GCNGC 9 cut(s) 241, 372, 526, 529, 749, 771, 842, 912, 944
BlsI GCNGC 9 cut(s) 242, 373, 527, 530, 750, 772, 843, 913, 945
Bme1390I CCNGG 4 cut(s) 245, 455, 755, 806
Bme18I GGWCC 1 cut(s) 757
BmeT110I CYCGRG 1 cut(s) 360
BmgT120I GGNCC 2 cut(s) 742, 757
BmiI GGNNCC 4 cut(s) 370, 486, 507, 951
BmrFI CCNGG 4 cut(s) 245, 455, 755, 806
BmrI ACTGGG 2 cut(s) 598, 619
BmsI GCATC 1 cut(s) 668
BmuI ACTGGG 2 cut(s) 598, 619
BpiI GAAGAC 1 cut(s) 961
BplI GAGNNNNNCTC 2 cut(s) 483, 515
BpmI CTGGAG 2 cut(s) 395, 737
Bpu14I TTCGAA 1 cut(s) 552
BpuMI CCSGG 1 cut(s) 245
Bsa29I ATCGAT 1 cut(s) 928
BsaAI YACGTR 1 cut(s) 404
BsaHI GRCGYC 3 cut(s) 324, 369, 711
BsaWI WCCGGW 1 cut(s) 425
BsaXI ACNNNNNCTCC 6 cut(s) 247, 277, 297, 327, 393, 423
Bsc4I CCNNNNNNNGG 2 cut(s) 284, 460
Bse118I RCCGGY 2 cut(s) 297, 797
Bse1I ACTGG 3 cut(s) 412, 604, 625
BseBI CCWGG 3 cut(s) 455, 755, 806
BseCI ATCGAT 1 cut(s) 928
BseGI GGATG 3 cut(s) 154, 598, 659
BseLI CCNNNNNNNGG 2 cut(s) 284, 460
BseNI ACTGG 3 cut(s) 412, 604, 625
BseSI GKGCMC 2 cut(s) 510, 548
BseXI GCAGC 5 cut(s) 227, 760, 828, 898, 930
BseYI CCCAGC 3 cut(s) 301, 744, 1043
Bsh1236I CGCG 1 cut(s) 764
Bsh1285I CGRYCG 1 cut(s) 730
BshFI GGCC 5 cut(s) 36, 297, 531, 743, 801
BshNI GGYRCC 4 cut(s) 368, 484, 505, 949
BshVI ATCGAT 1 cut(s) 928
BsiEI CGRYCG 1 cut(s) 730
BsiHKAI GWGCWC 3 cut(s) 419, 433, 450
BsiHKCI CYCGRG 1 cut(s) 360
BsiSI CCGG 4 cut(s) 245, 298, 426, 798
BslI CCNNNNNNNGG 2 cut(s) 284, 460
BsmAI GTCTC 2 cut(s) 300, 357
BsmBI CGTCTC 2 cut(s) 300, 357
BsnI GGCC 5 cut(s) 36, 297, 531, 743, 801
BsoBI CYCGRG 1 cut(s) 360
Bsp119I TTCGAA 1 cut(s) 552
Bsp1286I GDGCHC 5 cut(s) 419, 433, 450, 510, 548
Bsp143I GATC 6 cut(s) 120, 279, 420, 727, 852, 937
Bsp68I TCGCGA 1 cut(s) 764
BspACI CCGC 6 cut(s) 197, 372, 525, 528, 614, 771
BspANI GGCC 5 cut(s) 36, 297, 531, 743, 801
BspDI ATCGAT 1 cut(s) 928
BspFNI CGCG 1 cut(s) 764
BspLI GGNNCC 4 cut(s) 370, 486, 507, 951
BspPI GGATC 1 cut(s) 128
BspT104I TTCGAA 1 cut(s) 552
BspT107I GGYRCC 4 cut(s) 368, 484, 505, 949
BsrFI RCCGGY 2 cut(s) 297, 797
BsrI ACTGG 3 cut(s) 412, 604, 625
BssAI RCCGGY 2 cut(s) 297, 797
BssMI GATC 6 cut(s) 120, 279, 420, 727, 852, 937
BssNI GRCGYC 3 cut(s) 324, 369, 711
Bst2UI CCWGG 3 cut(s) 455, 755, 806
Bst4CI ACNGT 3 cut(s) 56, 591, 979
Bst6I CTCTTC 3 cut(s) 683, 782, 866
BstACI GRCGYC 3 cut(s) 324, 369, 711
BstBAI YACGTR 1 cut(s) 404
BstBI TTCGAA 1 cut(s) 552
BstC8I GCNNGC 1 cut(s) 299
BstF5I GGATG 3 cut(s) 154, 598, 659
BstFNI CGCG 1 cut(s) 764
BstH2I RGCGCY 1 cut(s) 372
BstHHI GCGC 1 cut(s) 371
BstKTI GATC 6 cut(s) 123, 282, 423, 730, 855, 940
BstMAI GTCTC 2 cut(s) 300, 357
BstMBI GATC 6 cut(s) 120, 279, 420, 727, 852, 937
BstMCI CGRYCG 1 cut(s) 730
BstMWI GCNNNNNNNGC 2 cut(s) 770, 949
BstNI CCWGG 3 cut(s) 455, 755, 806
BstSCI CCNGG 4 cut(s) 243, 453, 753, 804
BstSLI GKGCMC 2 cut(s) 510, 548
BstSNI TACGTA 1 cut(s) 404
BstUI CGCG 1 cut(s) 764
BstV1I GCAGC 5 cut(s) 227, 760, 828, 898, 930
BstV2I GAAGAC 1 cut(s) 961
Bsu15I ATCGAT 1 cut(s) 928
BsuI GTATCC 1 cut(s) 416
BsuRI GGCC 5 cut(s) 36, 297, 531, 743, 801
BsuTUI ATCGAT 1 cut(s) 928
BtsCI GGATG 3 cut(s) 154, 598, 659
BtsIMutI CAGTG 1 cut(s) 419
BtuMI TCGCGA 1 cut(s) 764
Cac8I GCNNGC 1 cut(s) 299
CfoI GCGC 1 cut(s) 371
Cfr10I RCCGGY 2 cut(s) 297, 797
Cfr13I GGNCC 2 cut(s) 742, 757
ClaI ATCGAT 1 cut(s) 928
CseI GACGC 2 cut(s) 719, 917
CsiI ACCWGGT 1 cut(s) 453
Csp6I GTAC 2 cut(s) 220, 886
CspCI CAANNNNNGTGG 2 cut(s) 964, 999
CviAII CATG 1 cut(s) 883
CviQI GTAC 2 cut(s) 220, 886
DinI GGCGCC 1 cut(s) 370
DpnI GATC 6 cut(s) 122, 281, 422, 729, 854, 939
DpnII GATC 6 cut(s) 120, 279, 420, 727, 852, 937
DrdI GACNNNNNNGTC 1 cut(s) 323
DseDI GACNNNNNNGTC 1 cut(s) 323
EaeI YGGCCR 1 cut(s) 295
Eam1104I CTCTTC 3 cut(s) 683, 782, 866
EarI CTCTTC 3 cut(s) 683, 782, 866
Eco105I TACGTA 1 cut(s) 404
Eco47I GGWCC 1 cut(s) 757
Eco57I CTGAAG 1 cut(s) 288
Eco88I CYCGRG 1 cut(s) 360
EcoO109I RGGNCCY 1 cut(s) 757
EcoRI GAATTC 1 cut(s) 878
EcoRII CCWGG 3 cut(s) 453, 753, 804
EgeI GGCGCC 1 cut(s) 370
EheI GGCGCC 1 cut(s) 370
Esp3I CGTCTC 2 cut(s) 300, 357
FaeI CATG 1 cut(s) 886
FaiI YATR 6 cut(s) 72, 81, 116, 176, 339, 884
FalI AAGNNNNNCTT 3 cut(s) 21, 53, 1047
FatI CATG 1 cut(s) 882
FblI GTMKAC 2 cut(s) 315, 327
Fnu4HI GCNGC 9 cut(s) 241, 372, 526, 529, 749, 771, 842, 912, 944
FokI GGATG 3 cut(s) 161, 585, 646
Fsp4HI GCNGC 9 cut(s) 241, 372, 526, 529, 749, 771, 842, 912, 944
FspBI CTAG 3 cut(s) 17, 290, 489
GlaI GCGC 1 cut(s) 370
GluI GCNGC 9 cut(s) 241, 372, 526, 529, 749, 771, 842, 912, 944
GsaI CCCAGC 3 cut(s) 305, 748, 1047
GsuI CTGGAG 2 cut(s) 395, 737
HaeII RGCGCY 1 cut(s) 372
HaeIII GGCC 5 cut(s) 36, 297, 531, 743, 801
HapII CCGG 4 cut(s) 245, 298, 426, 798
HgaI GACGC 2 cut(s) 719, 917
HhaI GCGC 1 cut(s) 371
Hin1I GRCGYC 3 cut(s) 324, 369, 711
Hin1II CATG 1 cut(s) 886
Hin6I GCGC 1 cut(s) 369
HinP1I GCGC 1 cut(s) 369
HincII GTYRAC 2 cut(s) 316, 328
HindII GTYRAC 2 cut(s) 316, 328
HinfI GANTC 5 cut(s) 352, 379, 535, 918, 925
HpaII CCGG 4 cut(s) 245, 298, 426, 798
HphI GGTGA 5 cut(s) 172, 223, 358, 787, 808
Hpy166II GTNNAC 4 cut(s) 316, 328, 594, 811
Hpy188I TCNGA 2 cut(s) 279, 540
Hpy8I GTNNAC 4 cut(s) 316, 328, 594, 811
Hpy99I CGWCG 5 cut(s) 320, 329, 332, 640, 713
HpyAV CCTTC 4 cut(s) 136, 674, 682, 843
HpyCH4III ACNGT 3 cut(s) 56, 591, 979
HpyCH4IV ACGT 2 cut(s) 324, 403
HpyCH4V TGCA 3 cut(s) 991, 1009, 1039
HpyF10VI GCNNNNNNNGC 2 cut(s) 770, 949
HpySE526I ACGT 2 cut(s) 324, 403
Hsp92I GRCGYC 3 cut(s) 324, 369, 711
Hsp92II CATG 1 cut(s) 886
HspAI GCGC 1 cut(s) 369
KasI GGCGCC 1 cut(s) 368
KroI GCCGGC 1 cut(s) 297
KroNI GCCGGC 1 cut(s) 299
Kzo9I GATC 6 cut(s) 120, 279, 420, 727, 852, 937
LmnI GCTCC 2 cut(s) 280, 756
Lsp1109I GCAGC 5 cut(s) 227, 760, 828, 898, 930
LweI GCATC 1 cut(s) 668
MabI ACCWGGT 1 cut(s) 453
MaeI CTAG 3 cut(s) 17, 290, 489
MaeII ACGT 2 cut(s) 324, 403
MaeIII GTNAC 4 cut(s) 50, 399, 1027, 1057
MalI GATC 6 cut(s) 122, 281, 422, 729, 854, 939
MboI GATC 6 cut(s) 120, 279, 420, 727, 852, 937
MhlI GDGCHC 5 cut(s) 419, 433, 450, 510, 548
MluCI AATT 6 cut(s) 192, 224, 516, 847, 878, 986
Mly113I GGCGCC 1 cut(s) 369
MlyI GAGTC 1 cut(s) 346
MroNI GCCGGC 1 cut(s) 297
MseI TTAA 1 cut(s) 716
MspI CCGG 4 cut(s) 245, 298, 426, 798
MspR9I CCNGG 4 cut(s) 245, 455, 755, 806
MvaI CCWGG 3 cut(s) 455, 755, 806
MvnI CGCG 1 cut(s) 764
MwoI GCNNNNNNNGC 2 cut(s) 770, 949
NaeI GCCGGC 1 cut(s) 299
NarI GGCGCC 1 cut(s) 369
NciI CCSGG 1 cut(s) 245
NdeII GATC 6 cut(s) 120, 279, 420, 727, 852, 937
NgoMIV GCCGGC 1 cut(s) 297
NlaIII CATG 1 cut(s) 886
NlaIV GGNNCC 4 cut(s) 370, 486, 507, 951
NmuCI GTSAC 2 cut(s) 50, 1057
NruI TCGCGA 1 cut(s) 764
NspV TTCGAA 1 cut(s) 552
PaeR7I CTCGAG 1 cut(s) 360
PcsI WCGNNNNNNNCGW 3 cut(s) 315, 321, 324
PdiI GCCGGC 1 cut(s) 299
PfeI GAWTC 4 cut(s) 379, 535, 918, 925
PflFI GACNNNGTC 2 cut(s) 311, 625
PflMI CCANNNNNTGG 1 cut(s) 460
PkrI GCNGC 9 cut(s) 242, 373, 527, 530, 750, 772, 843, 913, 945
Ple19I CGATCG 1 cut(s) 730
PleI GAGTC 1 cut(s) 346
PluTI GGCGCC 1 cut(s) 372
PpsI GAGTC 1 cut(s) 346
Ppu21I YACGTR 1 cut(s) 404
PpuMI RGGWCCY 1 cut(s) 757
Psp5II RGGWCCY 1 cut(s) 757
Psp6I CCWGG 3 cut(s) 453, 753, 804
PspFI CCCAGC 3 cut(s) 301, 744, 1043
PspGI CCWGG 3 cut(s) 453, 753, 804
PspN4I GGNNCC 4 cut(s) 370, 486, 507, 951
PspPI GGNCC 2 cut(s) 742, 757
PspPPI RGGWCCY 1 cut(s) 757
PsyI GACNNNGTC 2 cut(s) 311, 625
PvuI CGATCG 1 cut(s) 730
RruI TCGCGA 1 cut(s) 764
RsaI GTAC 2 cut(s) 221, 887
RsaNI GTAC 2 cut(s) 220, 886
SalI GTCGAC 2 cut(s) 314, 326
SaqAI TTAA 1 cut(s) 716
SatI GCNGC 9 cut(s) 241, 372, 526, 529, 749, 771, 842, 912, 944
Sau3AI GATC 6 cut(s) 120, 279, 420, 727, 852, 937
Sau96I GGNCC 2 cut(s) 742, 757
SchI GAGTC 1 cut(s) 346
ScrFI CCNGG 4 cut(s) 245, 455, 755, 806
SduI GDGCHC 5 cut(s) 419, 433, 450, 510, 548
SexAI ACCWGGT 1 cut(s) 453
SfaNI GCATC 1 cut(s) 668
SfoI GGCGCC 1 cut(s) 370
Sfr274I CTCGAG 1 cut(s) 360
SfuI TTCGAA 1 cut(s) 552
SgrDI CGTCGACG 1 cut(s) 326
SinI GGWCC 1 cut(s) 757
SlaI CTCGAG 1 cut(s) 360
SmlI CTYRAG 1 cut(s) 360
SmoI CTYRAG 1 cut(s) 360
SnaBI TACGTA 1 cut(s) 404
Sse9I AATT 6 cut(s) 192, 224, 516, 847, 878, 986
SsiI CCGC 6 cut(s) 197, 372, 525, 528, 614, 771
SspDI GGCGCC 1 cut(s) 368
SspI AATATT 1 cut(s) 180
SspMI CTAG 3 cut(s) 17, 290, 489
StyD4I CCNGG 4 cut(s) 243, 453, 753, 804
TaaI ACNGT 3 cut(s) 56, 591, 979
TaiI ACGT 2 cut(s) 327, 406
TasI AATT 6 cut(s) 192, 224, 516, 847, 878, 986
TatI WGTACW 2 cut(s) 219, 885
TauI GCSGC 4 cut(s) 374, 528, 531, 773
TfiI GAWTC 4 cut(s) 379, 535, 918, 925
Tru1I TTAA 1 cut(s) 716
Tru9I TTAA 1 cut(s) 716
TscAI CASTG 1 cut(s) 419
TseFI GTSAC 2 cut(s) 50, 1057
TseI GCWGC 5 cut(s) 240, 748, 841, 911, 943
Tsp45I GTSAC 2 cut(s) 50, 1057
TspDTI ATGAA 3 cut(s) 631, 670, 871
TspGWI ACGGA 2 cut(s) 38, 345
TspRI CASTG 1 cut(s) 419
Tth111I GACNNNGTC 2 cut(s) 311, 625
Van91I CCANNNNNTGG 1 cut(s) 460
VpaK11BI GGWCC 1 cut(s) 757
XapI RAATTY 1 cut(s) 878
XbaI TCTAGA 2 cut(s) 16, 289
XhoI CTCGAG 1 cut(s) 360
XmiI GTMKAC 2 cut(s) 315, 327
XspI CTAG 3 cut(s) 17, 290, 489
ZraI GACGTC 1 cut(s) 325
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.