RLG00000022046

RNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0001042
Physical Location & Seq
Reverse (-)
80258316 .. 80259533
1218 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000022046

Sequence Viewer

Length: 1218 bp
ATGAAAGAAGAAAGCTTGAAGAGTAAGTCCCTCTACTTATGTTTTGAGCGGAGTAAAAATTGTCCCGACAATGCTCACGTTATTCAATCTATCGAATTGAGCCACTTATTGACAGCACCAACTGATGGTGATCATGGCGGCGATGAAATTAAGTTGAGGGAAGTTGCTTATAGATGCGGACCGGGCACGAGTGTTCCCGGCCGAATGATAAGTAGTGTCATCGGCTCCAAAATTATTTTCTCTGGTGGCAAGGTATACAATAGAAAGAAAAGCACTACTCCTCCCATTCCCATGGGGATTGCAAGCAAAGAAGTTTGTGTGTTTGAGACAGATCCAAGCATAGATCCAAACCCAAGATTGCAGCCCTCCCAAGTGTTTAAGACTAGTAGACCCGAACCTTTCCTTGTAGAGGTGGACGACAATCTTTATTGTTTTAGTGGTCCGAGTGACTCTGTGTCATTTGAGGTATTTGACAAGACACATGAGAGATGGTTGCCTCTAGATGCGCCTCCTCAGAGAAATCCGTACAGCTTCTGTCATGCAATAGCGGGAACCAAAATCTTACTCTGGGTAAAAAATCAGACTGGAGTATTCGGGTTTGACGTGACTCACCCAGAAAAAGGATGGACAAAGTTGGATTCTTGTTTGGGAAGCTGTATTCCATTTGTCAATGGCTATCATCAACTATTTCTCAAGTTGAAGCTTCATCGTGGTGACGTTAATGGTTTTCTAATGTTCTCCTGTAAGTTGGAACAACCTCAGACTGTCAGAGTCTTCCACATGTCACATGAATGTGATTCTTTGAAACCTATGGAACCTCTACAGCTGCCGAAATTGCCTCATAAATTTCCTAGACCAACACGATGTATGTTTTTCCACCTAGAAGATGAAAAAATTGGAATTGTTTTCTTCCGTGACCATCATGAGTATTATTATGAGGATTATGATTATTTTGATGGTGATGATGACTACGACTACCACGAGGAGGAGGAGGAGGAGGAGGAGGACGATGATGTGAACATGGAGGAGGAGGAGGAGGAGGAGGAGGATGTTAGCCGGGTGAGAATTCTTGTCATAATATTTGAATACGGAATTGCGGAGGAATCCATGGATATCAGGTACAAATTGCTCACTAGTCGCTGCCTGGAATACTGTCCCCACAACCCGGAAGAAGTTAGGAACACCACACCAATTCTCATGGGGGCCTATGTGATCTAA

Protein Analysis

406

Amino Acids

46.71

Weight (kDa)

4.95

Isoelectric Point (pI)

54.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 125
AccBSI CCGCTC 1 cut(s) 49
AccI GTMKAC 2 cut(s) 255, 388
AciI CCGC 5 cut(s) 49, 138, 177, 548, 1097
AclWI GGATC 2 cut(s) 326, 338
AcoI YGGCCR 1 cut(s) 199
AcsI RAATTY 2 cut(s) 845, 1065
AfaI GTAC 2 cut(s) 527, 1121
AfiI CCNNNNNNNGG 5 cut(s) 125, 409, 620, 985, 1165
AflIII ACRYGT 1 cut(s) 780
AgsI TTSAA 5 cut(s) 19, 86, 700, 805, 1085
AhdI GACNNNNNGTC 1 cut(s) 454
AhlI ACTAGT 2 cut(s) 383, 1133
AjiI CACGTC 1 cut(s) 604
AjnI CCWGG 1 cut(s) 1143
AjuI GAANNNNNNNTTGG 2 cut(s) 221, 253
AluBI AGCT 5 cut(s) 15, 531, 654, 703, 826
AluI AGCT 5 cut(s) 15, 531, 654, 703, 826
Alw26I GTCTC 1 cut(s) 320
AlwI GGATC 2 cut(s) 326, 338
AlwNI CAGNNNCTG 1 cut(s) 534
AoxI GGCC 2 cut(s) 199, 1203
ApeKI GCWGC 3 cut(s) 361, 826, 1140
ApoI RAATTY 2 cut(s) 845, 1065
AspLEI GCGC 1 cut(s) 508
AspS9I GGNCC 3 cut(s) 179, 440, 1203
AsuC2I CCSGG 4 cut(s) 183, 198, 1058, 1166
AsuHPI GGTGA 5 cut(s) 140, 602, 725, 971, 1072
AvaII GGWCC 2 cut(s) 179, 440
BaeGI GKGCMC 1 cut(s) 188
BauI CACGAG 2 cut(s) 187, 980
BbsI GAAGAC 1 cut(s) 766
BbvI GCAGC 3 cut(s) 373, 813, 1127
BccI CCATC 5 cut(s) 119, 483, 618, 927, 950
BciT130I CCWGG 1 cut(s) 1145
BclI TGATCA 1 cut(s) 130
BcnI CCSGG 4 cut(s) 183, 198, 1058, 1166
BcoDI GTCTC 1 cut(s) 320
BcuI ACTAGT 2 cut(s) 383, 1133
BfaI CTAG 5 cut(s) 384, 500, 852, 881, 1134
BfmI CTRYAG 1 cut(s) 821
BisI GCNGC 4 cut(s) 139, 362, 827, 1141
BlsI GCNGC 4 cut(s) 140, 363, 828, 1142
Bme1390I CCNGG 5 cut(s) 183, 198, 1058, 1145, 1166
Bme18I GGWCC 2 cut(s) 179, 440
BmeRI GACNNNNNGTC 1 cut(s) 454
BmgBI CACGTC 1 cut(s) 604
BmgT120I GGNCC 3 cut(s) 179, 440, 1203
BmiI GGNNCC 4 cut(s) 226, 553, 816, 1204
BmrFI CCNGG 5 cut(s) 183, 198, 1058, 1145, 1166
BmsI GCATC 2 cut(s) 164, 493
BpiI GAAGAC 1 cut(s) 766
BpmI CTGGAG 1 cut(s) 606
BpuEI CTTGAG 1 cut(s) 677
BpuMI CCSGG 4 cut(s) 183, 198, 1058, 1166
BsaBI GATNNNNATC 1 cut(s) 129
BsaJI CCNNGG 2 cut(s) 291, 1107
BsaXI ACNNNNNCTCC 2 cut(s) 265, 295
Bsc4I CCNNNNNNNGG 5 cut(s) 125, 409, 620, 985, 1165
Bse1I ACTGG 1 cut(s) 589
Bse8I GATNNNNATC 1 cut(s) 129
BseBI CCWGG 1 cut(s) 1145
BseDI CCNNGG 2 cut(s) 291, 1107
BseGI GGATG 2 cut(s) 629, 1054
BseJI GATNNNNATC 1 cut(s) 129
BseLI CCNNNNNNNGG 5 cut(s) 125, 409, 620, 985, 1165
BseMII CTCAG 2 cut(s) 527, 773
BseNI ACTGG 1 cut(s) 589
BseSI GKGCMC 1 cut(s) 188
BseX3I CGGCCG 1 cut(s) 199
BseXI GCAGC 3 cut(s) 373, 813, 1127
Bsh1285I CGRYCG 1 cut(s) 202
BshFI GGCC 2 cut(s) 201, 1205
BsiEI CGRYCG 1 cut(s) 202
BsiSI CCGG 4 cut(s) 182, 198, 1057, 1166
BslFI GGGAC 3 cut(s) 13, 48, 1140
BslI CCNNNNNNNGG 5 cut(s) 125, 409, 620, 985, 1165
BsmAI GTCTC 1 cut(s) 320
BsmFI GGGAC 3 cut(s) 13, 48, 1140
BsnI GGCC 2 cut(s) 201, 1205
Bsp1286I GDGCHC 1 cut(s) 188
Bsp143I GATC 4 cut(s) 130, 331, 343, 1212
Bsp19I CCATGG 2 cut(s) 291, 1107
BspACI CCGC 5 cut(s) 49, 138, 177, 548, 1097
BspANI GGCC 2 cut(s) 201, 1205
BspCNI CTCAG 2 cut(s) 526, 772
BspHI TCATGA 1 cut(s) 922
BspLI GGNNCC 4 cut(s) 226, 553, 816, 1204
BspPI GGATC 2 cut(s) 326, 338
BsrBI CCGCTC 1 cut(s) 49
BsrI ACTGG 1 cut(s) 589
BssECI CCNNGG 2 cut(s) 291, 1107
BssMI GATC 4 cut(s) 130, 331, 343, 1212
BssNAI GTATAC 1 cut(s) 256
BssSI CACGAG 2 cut(s) 187, 980
BssT1I CCWWGG 2 cut(s) 291, 1107
Bst1107I GTATAC 1 cut(s) 256
Bst2BI CACGAG 2 cut(s) 187, 980
Bst2UI CCWGG 1 cut(s) 1145
Bst4CI ACNGT 2 cut(s) 766, 1154
Bst6I CTCTTC 1 cut(s) 14
BstC8I GCNNGC 1 cut(s) 304
BstDEI CTNAG 2 cut(s) 513, 759
BstDSI CCRYGG 2 cut(s) 291, 1107
BstENI CCTNNNNNAGG 1 cut(s) 407
BstF5I GGATG 2 cut(s) 629, 1054
BstHHI GCGC 1 cut(s) 508
BstKTI GATC 4 cut(s) 133, 334, 346, 1215
BstMAI GTCTC 1 cut(s) 320
BstMBI GATC 4 cut(s) 130, 331, 343, 1212
BstMCI CGRYCG 1 cut(s) 202
BstMWI GCNNNNNNNGC 2 cut(s) 183, 835
BstNI CCWGG 1 cut(s) 1145
BstNSI RCATGY 1 cut(s) 784
BstSCI CCNGG 5 cut(s) 181, 196, 1056, 1143, 1164
BstSFI CTRYAG 1 cut(s) 821
BstSLI GKGCMC 1 cut(s) 188
BstV1I GCAGC 3 cut(s) 373, 813, 1127
BstV2I GAAGAC 1 cut(s) 766
BstX2I RGATCY 2 cut(s) 331, 343
BstXI CCANNNNNNTGG 1 cut(s) 292
BstYI RGATCY 2 cut(s) 331, 343
BstZ17I GTATAC 1 cut(s) 256
BstZI CGGCCG 1 cut(s) 199
BsuRI GGCC 2 cut(s) 201, 1205
BtgI CCRYGG 2 cut(s) 291, 1107
BtgZI GCGATG 1 cut(s) 156
BtrI CACGTC 1 cut(s) 604
BtsCI GGATG 2 cut(s) 629, 1054
Cac8I GCNNGC 1 cut(s) 304
CaiI CAGNNNCTG 1 cut(s) 534
CciI TCATGA 1 cut(s) 922
CfoI GCGC 1 cut(s) 508
Cfr13I GGNCC 3 cut(s) 179, 440, 1203
CpoI CGGWCCG 1 cut(s) 179
Csp6I GTAC 2 cut(s) 526, 1120
CspI CGGWCCG 1 cut(s) 179
CviQI GTAC 2 cut(s) 526, 1120
DdeI CTNAG 2 cut(s) 513, 759
DpnI GATC 4 cut(s) 132, 333, 345, 1214
DpnII GATC 4 cut(s) 130, 331, 343, 1212
DriI GACNNNNNGTC 1 cut(s) 454
EaeI YGGCCR 1 cut(s) 199
EagI CGGCCG 1 cut(s) 199
Eam1104I CTCTTC 1 cut(s) 14
Eam1105I GACNNNNNGTC 1 cut(s) 454
EarI CTCTTC 1 cut(s) 14
EclXI CGGCCG 1 cut(s) 199
Eco130I CCWWGG 2 cut(s) 291, 1107
Eco32I GATATC 1 cut(s) 1114
Eco47I GGWCC 2 cut(s) 179, 440
Eco52I CGGCCG 1 cut(s) 199
EcoNI CCTNNNNNAGG 1 cut(s) 407
EcoO109I RGGNCCY 1 cut(s) 1203
EcoRI GAATTC 1 cut(s) 1065
EcoRII CCWGG 1 cut(s) 1143
EcoRV GATATC 1 cut(s) 1114
EcoT14I CCWWGG 2 cut(s) 291, 1107
ErhI CCWWGG 2 cut(s) 291, 1107
FaqI GGGAC 3 cut(s) 13, 48, 1140
FauI CCCGC 1 cut(s) 541
FbaI TGATCA 1 cut(s) 130
FblI GTMKAC 2 cut(s) 255, 388
Fnu4HI GCNGC 4 cut(s) 139, 362, 827, 1141
FokI GGATG 2 cut(s) 636, 1061
Fsp4HI GCNGC 4 cut(s) 139, 362, 827, 1141
FspBI CTAG 5 cut(s) 384, 500, 852, 881, 1134
GlaI GCGC 1 cut(s) 507
GluI GCNGC 4 cut(s) 139, 362, 827, 1141
GsuI CTGGAG 1 cut(s) 606
HaeIII GGCC 2 cut(s) 201, 1205
HapII CCGG 4 cut(s) 182, 198, 1057, 1166
HhaI GCGC 1 cut(s) 508
Hin6I GCGC 1 cut(s) 506
HinP1I GCGC 1 cut(s) 506
HindIII AAGCTT 2 cut(s) 13, 701
HinfI GANTC 6 cut(s) 449, 607, 638, 771, 797, 1103
HpaII CCGG 4 cut(s) 182, 198, 1057, 1166
HphI GGTGA 5 cut(s) 140, 602, 725, 971, 1072
Hpy166II GTNNAC 4 cut(s) 256, 389, 415, 1018
Hpy188I TCNGA 5 cut(s) 444, 516, 582, 762, 770
Hpy188III TCNNGA 3 cut(s) 65, 500, 923
Hpy8I GTNNAC 4 cut(s) 256, 389, 415, 1018
HpyCH4III ACNGT 2 cut(s) 766, 1154
HpyCH4IV ACGT 3 cut(s) 78, 603, 717
HpyCH4V TGCA 3 cut(s) 302, 361, 542
HpyF10VI GCNNNNNNNGC 2 cut(s) 183, 835
HpyF3I CTNAG 2 cut(s) 513, 759
HpySE526I ACGT 3 cut(s) 78, 603, 717
HspAI GCGC 1 cut(s) 506
Ksp22I TGATCA 1 cut(s) 130
Kzo9I GATC 4 cut(s) 130, 331, 343, 1212
LmnI GCTCC 1 cut(s) 230
Lsp1109I GCAGC 3 cut(s) 373, 813, 1127
LweI GCATC 2 cut(s) 164, 493
MaeI CTAG 5 cut(s) 384, 500, 852, 881, 1134
MaeII ACGT 3 cut(s) 78, 603, 717
MaeIII GTNAC 5 cut(s) 446, 604, 713, 783, 914
MalI GATC 4 cut(s) 132, 333, 345, 1214
MbiI CCGCTC 1 cut(s) 49
MboI GATC 4 cut(s) 130, 331, 343, 1212
MboII GAAGA 6 cut(s) 20, 31, 766, 896, 901, 1181
MflI RGATCY 2 cut(s) 331, 343
MhlI GDGCHC 1 cut(s) 188
MlyI GAGTC 3 cut(s) 443, 601, 780
MmeI TCCRAC 2 cut(s) 615, 729
MseI TTAA 3 cut(s) 150, 378, 720
MslI CAYNNNNRTG 4 cut(s) 290, 711, 790, 792
MspA1I CMGCKG 1 cut(s) 826
MspI CCGG 4 cut(s) 182, 198, 1057, 1166
MspR9I CCNGG 5 cut(s) 183, 198, 1058, 1145, 1166
MvaI CCWGG 1 cut(s) 1145
MwoI GCNNNNNNNGC 2 cut(s) 183, 835
NciI CCSGG 4 cut(s) 183, 198, 1058, 1166
NcoI CCATGG 2 cut(s) 291, 1107
NdeII GATC 4 cut(s) 130, 331, 343, 1212
NlaIV GGNNCC 4 cut(s) 226, 553, 816, 1204
NmuCI GTSAC 5 cut(s) 446, 604, 713, 783, 914
NspI RCATGY 1 cut(s) 784
PagI TCATGA 1 cut(s) 922
PciI ACATGT 1 cut(s) 780
PcsI WCGNNNNNNNCGW 2 cut(s) 600, 978
PfeI GAWTC 3 cut(s) 638, 797, 1103
PflMI CCANNNNNTGG 1 cut(s) 125
PkrI GCNGC 4 cut(s) 140, 363, 828, 1142
PleI GAGTC 3 cut(s) 443, 601, 779
PpsI GAGTC 3 cut(s) 443, 601, 779
PscI ACATGT 1 cut(s) 780
Psp6I CCWGG 1 cut(s) 1143
PspGI CCWGG 1 cut(s) 1143
PspN4I GGNNCC 4 cut(s) 226, 553, 816, 1204
PspPI GGNCC 3 cut(s) 179, 440, 1203
PstNI CAGNNNCTG 1 cut(s) 534
PsuI RGATCY 2 cut(s) 331, 343
PvuII CAGCTG 1 cut(s) 826
RsaI GTAC 2 cut(s) 527, 1121
RsaNI GTAC 2 cut(s) 526, 1120
RseI CAYNNNNRTG 4 cut(s) 290, 711, 790, 792
Rsr2I CGGWCCG 1 cut(s) 179
RsrII CGGWCCG 1 cut(s) 179
SaqAI TTAA 3 cut(s) 150, 378, 720
SatI GCNGC 4 cut(s) 139, 362, 827, 1141
Sau3AI GATC 4 cut(s) 130, 331, 343, 1212
Sau96I GGNCC 3 cut(s) 179, 440, 1203
SchI GAGTC 3 cut(s) 443, 601, 780
ScrFI CCNGG 5 cut(s) 183, 198, 1058, 1145, 1166
SduI GDGCHC 1 cut(s) 188
SfaNI GCATC 2 cut(s) 164, 493
SfcI CTRYAG 1 cut(s) 821
SinI GGWCC 2 cut(s) 179, 440
SmiMI CAYNNNNRTG 4 cut(s) 290, 711, 790, 792
SmlI CTYRAG 1 cut(s) 692
SmoI CTYRAG 1 cut(s) 692
SpeI ACTAGT 2 cut(s) 383, 1133
SsiI CCGC 5 cut(s) 49, 138, 177, 548, 1097
SspI AATATT 1 cut(s) 1080
SspMI CTAG 5 cut(s) 384, 500, 852, 881, 1134
StyD4I CCNGG 5 cut(s) 181, 196, 1056, 1143, 1164
StyI CCWWGG 2 cut(s) 291, 1107
TaaI ACNGT 2 cut(s) 766, 1154
TaiI ACGT 3 cut(s) 81, 606, 720
TaqI TCGA 1 cut(s) 93
TauI GCSGC 1 cut(s) 141
TfiI GAWTC 3 cut(s) 638, 797, 1103
Tru1I TTAA 3 cut(s) 150, 378, 720
Tru9I TTAA 3 cut(s) 150, 378, 720
TseFI GTSAC 5 cut(s) 446, 604, 713, 783, 914
TseI GCWGC 3 cut(s) 361, 826, 1140
Tsp45I GTSAC 5 cut(s) 446, 604, 713, 783, 914
TspDTI ATGAA 5 cut(s) 17, 159, 695, 804, 903
TspGWI ACGGA 3 cut(s) 513, 902, 1104
Van91I CCANNNNNTGG 1 cut(s) 125
VpaK11BI GGWCC 2 cut(s) 179, 440
XagI CCTNNNNNAGG 1 cut(s) 407
XapI RAATTY 2 cut(s) 845, 1065
XbaI TCTAGA 1 cut(s) 499
XceI RCATGY 1 cut(s) 784
XcmI CCANNNNNNNNNTGG 1 cut(s) 621
XmiI GTMKAC 2 cut(s) 255, 388
XspI CTAG 5 cut(s) 384, 500, 852, 881, 1134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.