Rh2CG611700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0001042
Physical Location & Seq
Forward (+)
78950498 .. 78950974
477 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG611700.1

Sequence Viewer

Length: 477 bp
ATGGACCCTCTGCAGCTGCCAGAATGGCCTCCAAAATTTCATAGTCCAGATCCAAAACTTCATAGTCCAGATCGATGTCTGTTTTTTCACCTTGGAGGGCAAAAGGTCGGTCTTGTTGTCTCCCGTGATTCATTACCTGAGGATACATTACGTGATTACTATTATGATCATTATGATTTCCCTTCTGATTATGATGACGACGATAATGAAGACAACGAAGATGATGATAAAGACAACAAAGACGATGGCCATAATAATGATAATCACGACGCCTCTGACAATGTTAATTATGATTGCCATGAGGATAGTGACAAGGTGAGAGTTCTTGTCATAATCTTTGAATACGAAATTGCTGAGGAATCCATGGACATCAAATACAAGTTGCTTAGTACTCGCTGCCTTAAATACTCTTCCAAGAATCCTAAAGAAGAATCTCGGACTAGTACCTCACAACTGATAGGTGCCCATGTGATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

158

Amino Acids

18.42

Weight (kDa)

4.45

Isoelectric Point (pI)

55.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 461
AclWI GGATC 1 cut(s) 44
AcoI YGGCCR 1 cut(s) 247
AcsI RAATTY 1 cut(s) 35
AcyI GRCGYC 1 cut(s) 270
AfaI GTAC 2 cut(s) 391, 445
AgsI TTSAA 1 cut(s) 341
AhlI ACTAGT 1 cut(s) 440
AluBI AGCT 1 cut(s) 16
AluI AGCT 1 cut(s) 16
Alw26I GTCTC 1 cut(s) 124
AlwI GGATC 1 cut(s) 44
AoxI GGCC 2 cut(s) 26, 247
ApeKI GCWGC 3 cut(s) 13, 16, 396
ApoI RAATTY 1 cut(s) 35
ArsI GACNNNNNNTTYG 2 cut(s) 94, 126
AspS9I GGNCC 1 cut(s) 4
AsuHPI GGTGA 2 cut(s) 80, 328
AvaII GGWCC 1 cut(s) 4
AxyI CCTNAGG 1 cut(s) 138
BaeGI GKGCMC 1 cut(s) 466
BalI TGGCCA 1 cut(s) 249
BanI GGYRCC 1 cut(s) 461
BbsI GAAGAC 1 cut(s) 216
BbvCI CCTCAGC 1 cut(s) 354
BbvI GCAGC 3 cut(s) 3, 25, 383
BccI CCATC 1 cut(s) 239
BciVI GTATCC 1 cut(s) 136
BclI TGATCA 1 cut(s) 166
BcoDI GTCTC 1 cut(s) 124
BcuI ACTAGT 1 cut(s) 440
BfaI CTAG 1 cut(s) 441
BfmI CTRYAG 1 cut(s) 11
BfuI GTATCC 1 cut(s) 136
BglI GCCNNNNNGGC 1 cut(s) 25
BisI GCNGC 3 cut(s) 14, 17, 397
BlsI GCNGC 3 cut(s) 15, 18, 398
BmcAI AGTACT 1 cut(s) 391
Bme18I GGWCC 1 cut(s) 4
BmgT120I GGNCC 1 cut(s) 4
BmiI GGNNCC 2 cut(s) 6, 463
BpiI GAAGAC 1 cut(s) 216
Bpu10I CCTNAGC 1 cut(s) 354
Bsa29I ATCGAT 1 cut(s) 73
BsaAI YACGTR 1 cut(s) 152
BsaHI GRCGYC 1 cut(s) 270
BsaJI CCNNGG 2 cut(s) 91, 363
Bse21I CCTNAGG 1 cut(s) 138
BseCI ATCGAT 1 cut(s) 73
BseDI CCNNGG 2 cut(s) 91, 363
BseMII CTCAG 2 cut(s) 129, 345
BseSI GKGCMC 1 cut(s) 466
BseXI GCAGC 3 cut(s) 3, 25, 383
BshFI GGCC 2 cut(s) 28, 249
BshNI GGYRCC 1 cut(s) 461
BshVI ATCGAT 1 cut(s) 73
BsmAI GTCTC 1 cut(s) 124
BsnI GGCC 2 cut(s) 28, 249
Bsp1286I GDGCHC 1 cut(s) 466
Bsp143I GATC 3 cut(s) 49, 70, 166
Bsp19I CCATGG 1 cut(s) 363
BspANI GGCC 2 cut(s) 28, 249
BspCNI CTCAG 2 cut(s) 130, 346
BspDI ATCGAT 1 cut(s) 73
BspLI GGNNCC 2 cut(s) 6, 463
BspMAI CTGCAG 1 cut(s) 15
BspPI GGATC 1 cut(s) 44
BspT107I GGYRCC 1 cut(s) 461
BssECI CCNNGG 2 cut(s) 91, 363
BssMI GATC 3 cut(s) 49, 70, 166
BssNI GRCGYC 1 cut(s) 270
BssT1I CCWWGG 2 cut(s) 91, 363
Bst6I CTCTTC 1 cut(s) 415
BstACI GRCGYC 1 cut(s) 270
BstBAI YACGTR 1 cut(s) 152
BstDEI CTNAG 3 cut(s) 138, 354, 386
BstDSI CCRYGG 1 cut(s) 363
BstKTI GATC 3 cut(s) 52, 73, 169
BstMAI GTCTC 1 cut(s) 124
BstMBI GATC 3 cut(s) 49, 70, 166
BstMWI GCNNNNNNNGC 1 cut(s) 25
BstSFI CTRYAG 1 cut(s) 11
BstSLI GKGCMC 1 cut(s) 466
BstV1I GCAGC 3 cut(s) 3, 25, 383
BstV2I GAAGAC 1 cut(s) 216
BstX2I RGATCY 1 cut(s) 49
BstYI RGATCY 1 cut(s) 49
Bsu15I ATCGAT 1 cut(s) 73
Bsu36I CCTNAGG 1 cut(s) 138
BsuI GTATCC 1 cut(s) 136
BsuRI GGCC 2 cut(s) 28, 249
BsuTUI ATCGAT 1 cut(s) 73
BtgI CCRYGG 1 cut(s) 363
Cfr13I GGNCC 1 cut(s) 4
ClaI ATCGAT 1 cut(s) 73
CseI GACGC 1 cut(s) 278
Csp6I GTAC 2 cut(s) 390, 444
CviAII CATG 3 cut(s) 299, 364, 467
CviJI RGCY 3 cut(s) 16, 28, 249
CviKI_1 RGCY 3 cut(s) 16, 28, 249
CviQI GTAC 2 cut(s) 390, 444
DdeI CTNAG 3 cut(s) 138, 354, 386
DpnI GATC 3 cut(s) 51, 72, 168
DpnII GATC 3 cut(s) 49, 70, 166
EaeI YGGCCR 1 cut(s) 247
Eam1104I CTCTTC 1 cut(s) 415
EarI CTCTTC 1 cut(s) 415
Eco130I CCWWGG 2 cut(s) 91, 363
Eco47I GGWCC 1 cut(s) 4
Eco81I CCTNAGG 1 cut(s) 138
EcoT14I CCWWGG 2 cut(s) 91, 363
ErhI CCWWGG 2 cut(s) 91, 363
FaeI CATG 3 cut(s) 302, 367, 470
FatI CATG 3 cut(s) 298, 363, 466
FbaI TGATCA 1 cut(s) 166
Fnu4HI GCNGC 3 cut(s) 14, 17, 397
Fsp4HI GCNGC 3 cut(s) 14, 17, 397
FspBI CTAG 1 cut(s) 441
GluI GCNGC 3 cut(s) 14, 17, 397
HaeIII GGCC 2 cut(s) 28, 249
HgaI GACGC 1 cut(s) 278
Hin1I GRCGYC 1 cut(s) 270
Hin1II CATG 3 cut(s) 302, 367, 470
HinfI GANTC 4 cut(s) 128, 359, 418, 431
HphI GGTGA 2 cut(s) 80, 328
Hpy188I TCNGA 3 cut(s) 187, 277, 438
Hpy188III TCNNGA 3 cut(s) 47, 68, 266
Hpy99I CGWCG 2 cut(s) 203, 272
HpyAV CCTTC 1 cut(s) 192
HpyCH4IV ACGT 1 cut(s) 151
HpyCH4V TGCA 1 cut(s) 13
HpyF10VI GCNNNNNNNGC 1 cut(s) 25
HpyF3I CTNAG 3 cut(s) 138, 354, 386
HpySE526I ACGT 1 cut(s) 151
Hsp92I GRCGYC 1 cut(s) 270
Hsp92II CATG 3 cut(s) 302, 367, 470
Ksp22I TGATCA 1 cut(s) 166
Kzo9I GATC 3 cut(s) 49, 70, 166
LpnPI CCDG 4 cut(s) 33, 60, 81, 150
Lsp1109I GCAGC 3 cut(s) 3, 25, 383
MaeI CTAG 1 cut(s) 441
MaeII ACGT 1 cut(s) 151
MaeIII GTNAC 1 cut(s) 308
MalI GATC 3 cut(s) 51, 72, 168
MboI GATC 3 cut(s) 49, 70, 166
MboII GAAGA 4 cut(s) 221, 230, 402, 440
MflI RGATCY 1 cut(s) 49
MhlI GDGCHC 1 cut(s) 466
MlsI TGGCCA 1 cut(s) 249
MluCI AATT 3 cut(s) 35, 286, 348
MluNI TGGCCA 1 cut(s) 249
MnlI CCTC 8 cut(s) 18, 39, 89, 133, 283, 295, 349, 457
Mox20I TGGCCA 1 cut(s) 249
MscI TGGCCA 1 cut(s) 249
MseI TTAA 2 cut(s) 285, 402
MslI CAYNNNNRTG 1 cut(s) 255
Msp20I TGGCCA 1 cut(s) 249
MspA1I CMGCKG 1 cut(s) 16
MwoI GCNNNNNNNGC 1 cut(s) 25
NcoI CCATGG 1 cut(s) 363
NdeII GATC 3 cut(s) 49, 70, 166
NlaIII CATG 3 cut(s) 302, 367, 470
NlaIV GGNNCC 2 cut(s) 6, 463
NmuCI GTSAC 1 cut(s) 308
PfeI GAWTC 4 cut(s) 128, 359, 418, 431
PkrI GCNGC 3 cut(s) 15, 18, 398
Ppu21I YACGTR 1 cut(s) 152
PspN4I GGNNCC 2 cut(s) 6, 463
PspPI GGNCC 1 cut(s) 4
PstI CTGCAG 1 cut(s) 15
PsuI RGATCY 1 cut(s) 49
PvuII CAGCTG 1 cut(s) 16
RsaI GTAC 2 cut(s) 391, 445
RsaNI GTAC 2 cut(s) 390, 444
RseI CAYNNNNRTG 1 cut(s) 255
SaqAI TTAA 2 cut(s) 285, 402
SatI GCNGC 3 cut(s) 14, 17, 397
Sau3AI GATC 3 cut(s) 49, 70, 166
Sau96I GGNCC 1 cut(s) 4
ScaI AGTACT 1 cut(s) 391
SduI GDGCHC 1 cut(s) 466
SetI ASST 8 cut(s) 18, 93, 108, 139, 154, 318, 449, 463
SfcI CTRYAG 1 cut(s) 11
SinI GGWCC 1 cut(s) 4
SmiMI CAYNNNNRTG 1 cut(s) 255
SpeI ACTAGT 1 cut(s) 440
Sse9I AATT 3 cut(s) 35, 286, 348
SspMI CTAG 1 cut(s) 441
StyI CCWWGG 2 cut(s) 91, 363
TaiI ACGT 1 cut(s) 154
TaqI TCGA 1 cut(s) 73
TaqII GACCGA 1 cut(s) 98
TasI AATT 3 cut(s) 35, 286, 348
TatI WGTACW 1 cut(s) 389
TfiI GAWTC 4 cut(s) 128, 359, 418, 431
Tru1I TTAA 2 cut(s) 285, 402
Tru9I TTAA 2 cut(s) 285, 402
TseFI GTSAC 1 cut(s) 308
TseI GCWGC 3 cut(s) 13, 16, 396
Tsp45I GTSAC 1 cut(s) 308
TspDTI ATGAA 4 cut(s) 29, 50, 120, 222
VpaK11BI GGWCC 1 cut(s) 4
XapI RAATTY 1 cut(s) 35
XspI CTAG 1 cut(s) 441
ZrmI AGTACT 1 cut(s) 391
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.