Rh2DG658900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0001042
Physical Location & Seq
Reverse (-)
88568013 .. 88568516
504 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG658900.1

Sequence Viewer

Length: 504 bp
ATGAGTACTGGCGTCGTCGGCTCCAAAATTATTCTCTTTGGTGGTAAGGTTTTTCCTCCGGTACGACATCATCATATTTTTGAATATTCACTAAGCAAAGAAGTTTGTGTGTTTGAGACAGATCCAAGCATAGATCCAAACCCGGAATTGCAGCCTTCCCAAGTTTTTAAGATTAGTATACCTGAACCTGTTCTAGTAGAGGTGGACGACAAACTTTATCGTTTCGGTGGTCGATGTGACTGTGAGTCATTTGAGGTTTTTGAACCAATACAGGATGCCTGGTTGCCTCTGGATGTGCCTCCTCGAAAGTATCCCTACGGCTTCACTCATGCAATTCCAAGCACCAAAATCCTACTCTGGGGCAGAAATCAGACCGGAGTGTACATGTTTGATGCGACCCAGCCGGAAAAAGGATGGATAGAATTGGACCCTTGTTTGGGAAGCTATATTCCCTCTATTGATGGTTATGATAAACTACTTCAAGTTGAAGTTTCGTCATGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

167

Amino Acids

18.95

Weight (kDa)

4.82

Isoelectric Point (pI)

47.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 178
AclWI GGATC 2 cut(s) 116, 128
AcyI GRCGYC 1 cut(s) 12
AfaI GTAC 3 cut(s) 7, 63, 383
AfiI CCNNNNNNNGG 4 cut(s) 358, 410, 436, 437
AflIII ACRYGT 1 cut(s) 384
AgsI TTSAA 4 cut(s) 83, 263, 482, 488
AhdI GACNNNNNGTC 1 cut(s) 244
AjnI CCWGG 1 cut(s) 278
AluBI AGCT 1 cut(s) 444
AluI AGCT 1 cut(s) 444
Alw26I GTCTC 1 cut(s) 110
AlwI GGATC 2 cut(s) 116, 128
ApeKI GCWGC 1 cut(s) 151
Asp700I GAANNNNTTC 1 cut(s) 189
AspS9I GGNCC 1 cut(s) 427
AsuC2I CCSGG 1 cut(s) 143
AvaII GGWCC 1 cut(s) 427
BbvI GCAGC 1 cut(s) 163
BccI CCATC 2 cut(s) 408, 455
BceAI ACGGC 1 cut(s) 334
BciT130I CCWGG 1 cut(s) 280
BciVI GTATCC 1 cut(s) 321
BcnI CCSGG 1 cut(s) 143
BcoDI GTCTC 1 cut(s) 110
BfaI CTAG 1 cut(s) 194
BfuI GTATCC 1 cut(s) 321
BisI GCNGC 1 cut(s) 152
BlsI GCNGC 1 cut(s) 153
BmcAI AGTACT 1 cut(s) 7
Bme1390I CCNGG 2 cut(s) 143, 280
Bme18I GGWCC 1 cut(s) 427
BmeRI GACNNNNNGTC 1 cut(s) 244
BmgT120I GGNCC 1 cut(s) 427
BmiI GGNNCC 2 cut(s) 22, 429
BmrFI CCNGG 2 cut(s) 143, 280
BmsI GCATC 2 cut(s) 265, 382
BpuMI CCSGG 1 cut(s) 143
BsaHI GRCGYC 1 cut(s) 12
BsaWI WCCGGW 2 cut(s) 58, 374
Bsc4I CCNNNNNNNGG 4 cut(s) 358, 410, 436, 437
Bse1I ACTGG 1 cut(s) 13
BseBI CCWGG 1 cut(s) 280
BseGI GGATG 3 cut(s) 280, 298, 419
BseLI CCNNNNNNNGG 4 cut(s) 358, 410, 436, 437
BseNI ACTGG 1 cut(s) 13
BseRI GAGGAG 1 cut(s) 291
BseXI GCAGC 1 cut(s) 163
BseYI CCCAGC 1 cut(s) 399
BsiSI CCGG 4 cut(s) 59, 143, 375, 404
BslI CCNNNNNNNGG 4 cut(s) 358, 410, 436, 437
BsmAI GTCTC 1 cut(s) 110
Bsp1407I TGTACA 1 cut(s) 381
Bsp143I GATC 2 cut(s) 121, 133
BspLI GGNNCC 2 cut(s) 22, 429
BspPI GGATC 2 cut(s) 116, 128
BsrGI TGTACA 1 cut(s) 381
BsrI ACTGG 1 cut(s) 13
BssMI GATC 2 cut(s) 121, 133
BssNAI GTATAC 1 cut(s) 179
BssNI GRCGYC 1 cut(s) 12
Bst1107I GTATAC 1 cut(s) 179
Bst2UI CCWGG 1 cut(s) 280
Bst4CI ACNGT 1 cut(s) 242
BstACI GRCGYC 1 cut(s) 12
BstAUI TGTACA 1 cut(s) 381
BstDEI CTNAG 1 cut(s) 92
BstF5I GGATG 3 cut(s) 280, 298, 419
BstKTI GATC 2 cut(s) 124, 136
BstMAI GTCTC 1 cut(s) 110
BstMBI GATC 2 cut(s) 121, 133
BstMWI GCNNNNNNNGC 1 cut(s) 18
BstNI CCWGG 1 cut(s) 280
BstNSI RCATGY 1 cut(s) 388
BstSCI CCNGG 2 cut(s) 141, 278
BstV1I GCAGC 1 cut(s) 163
BstX2I RGATCY 2 cut(s) 121, 133
BstYI RGATCY 2 cut(s) 121, 133
BstZ17I GTATAC 1 cut(s) 179
BsuI GTATCC 1 cut(s) 321
BtsCI GGATG 3 cut(s) 280, 298, 419
Cfr13I GGNCC 1 cut(s) 427
Csp6I GTAC 3 cut(s) 6, 62, 382
CviAII CATG 3 cut(s) 329, 385, 498
CviJI RGCY 5 cut(s) 21, 154, 321, 403, 444
CviKI_1 RGCY 5 cut(s) 21, 154, 321, 403, 444
CviQI GTAC 3 cut(s) 6, 62, 382
DdeI CTNAG 1 cut(s) 92
DpnI GATC 2 cut(s) 123, 135
DpnII GATC 2 cut(s) 121, 133
DriI GACNNNNNGTC 1 cut(s) 244
Eam1105I GACNNNNNGTC 1 cut(s) 244
Eco47I GGWCC 1 cut(s) 427
EcoRII CCWGG 1 cut(s) 278
FaeI CATG 3 cut(s) 332, 388, 501
FaiI YATR 8 cut(s) 75, 131, 179, 330, 386, 447, 468, 499
FatI CATG 3 cut(s) 328, 384, 497
FblI GTMKAC 1 cut(s) 178
Fnu4HI GCNGC 1 cut(s) 152
FokI GGATG 3 cut(s) 287, 305, 426
Fsp4HI GCNGC 1 cut(s) 152
FspBI CTAG 1 cut(s) 194
GluI GCNGC 1 cut(s) 152
GsaI CCCAGC 1 cut(s) 403
HapII CCGG 4 cut(s) 59, 143, 375, 404
Hin1I GRCGYC 1 cut(s) 12
Hin1II CATG 3 cut(s) 332, 388, 501
HinfI GANTC 1 cut(s) 245
HpaII CCGG 4 cut(s) 59, 143, 375, 404
Hpy166II GTNNAC 3 cut(s) 179, 205, 382
Hpy188I TCNGA 1 cut(s) 372
Hpy188III TCNNGA 1 cut(s) 290
Hpy8I GTNNAC 3 cut(s) 179, 205, 382
Hpy99I CGWCG 2 cut(s) 17, 20
HpyAV CCTTC 1 cut(s) 165
HpyCH4III ACNGT 1 cut(s) 242
HpyCH4V TGCA 2 cut(s) 151, 332
HpyF10VI GCNNNNNNNGC 1 cut(s) 18
HpyF3I CTNAG 1 cut(s) 92
Hsp92I GRCGYC 1 cut(s) 12
Hsp92II CATG 3 cut(s) 332, 388, 501
Kzo9I GATC 2 cut(s) 121, 133
LmnI GCTCC 1 cut(s) 26
Lsp1109I GCAGC 1 cut(s) 163
LweI GCATC 2 cut(s) 265, 382
MaeI CTAG 1 cut(s) 194
MaeIII GTNAC 1 cut(s) 236
MalI GATC 2 cut(s) 123, 135
MboI GATC 2 cut(s) 121, 133
MflI RGATCY 2 cut(s) 121, 133
MluCI AATT 4 cut(s) 27, 146, 333, 422
MlyI GAGTC 1 cut(s) 254
MnlI CCTC 7 cut(s) 66, 193, 247, 297, 309, 312, 463
MroXI GAANNNNTTC 1 cut(s) 189
MseI TTAA 1 cut(s) 168
MspI CCGG 4 cut(s) 59, 143, 375, 404
MspR9I CCNGG 2 cut(s) 143, 280
MvaI CCWGG 1 cut(s) 280
MwoI GCNNNNNNNGC 1 cut(s) 18
NciI CCSGG 1 cut(s) 143
NdeII GATC 2 cut(s) 121, 133
NlaIII CATG 3 cut(s) 332, 388, 501
NlaIV GGNNCC 2 cut(s) 22, 429
NmuCI GTSAC 1 cut(s) 236
NspI RCATGY 1 cut(s) 388
PciI ACATGT 1 cut(s) 384
PdmI GAANNNNTTC 1 cut(s) 189
PkrI GCNGC 1 cut(s) 153
PleI GAGTC 1 cut(s) 253
PpsI GAGTC 1 cut(s) 253
PscI ACATGT 1 cut(s) 384
Psp6I CCWGG 1 cut(s) 278
PspFI CCCAGC 1 cut(s) 399
PspGI CCWGG 1 cut(s) 278
PspN4I GGNNCC 2 cut(s) 22, 429
PspPI GGNCC 1 cut(s) 427
PsuI RGATCY 2 cut(s) 121, 133
RsaI GTAC 3 cut(s) 7, 63, 383
RsaNI GTAC 3 cut(s) 6, 62, 382
SaqAI TTAA 1 cut(s) 168
SatI GCNGC 1 cut(s) 152
Sau3AI GATC 2 cut(s) 121, 133
Sau96I GGNCC 1 cut(s) 427
ScaI AGTACT 1 cut(s) 7
SchI GAGTC 1 cut(s) 254
ScrFI CCNGG 2 cut(s) 143, 280
SetI ASST 6 cut(s) 51, 184, 190, 204, 258, 446
SfaNI GCATC 2 cut(s) 265, 382
SinI GGWCC 1 cut(s) 427
Sse9I AATT 4 cut(s) 27, 146, 333, 422
SspI AATATT 1 cut(s) 86
SspMI CTAG 1 cut(s) 194
StyD4I CCNGG 2 cut(s) 141, 278
TaaI ACNGT 1 cut(s) 242
TaqI TCGA 2 cut(s) 232, 304
TasI AATT 4 cut(s) 27, 146, 333, 422
TatI WGTACW 2 cut(s) 5, 381
Tru1I TTAA 1 cut(s) 168
Tru9I TTAA 1 cut(s) 168
TseFI GTSAC 1 cut(s) 236
TseI GCWGC 1 cut(s) 151
Tsp45I GTSAC 1 cut(s) 236
VpaK11BI GGWCC 1 cut(s) 427
XceI RCATGY 1 cut(s) 388
XmiI GTMKAC 1 cut(s) 178
XmnI GAANNNNTTC 1 cut(s) 189
XspI CTAG 1 cut(s) 194
ZrmI AGTACT 1 cut(s) 7
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.