Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0001042

Physical Location & Seq

Genomic Coordinates Forward (+)

37661614 .. 37662857

Gene Structure 1244 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g50642.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

ATGGCCTGGTATAGACGGCGGTGCATAGCGACAGCGGCGACAGCCTTAGCAAGCTACTGGGAGAAGGGGCCGAAGAAAATTAGCATGTTGTCTGGATTAATCAGAAGAAATTGTGCTACTTTAGCACCGCTTGTGGGAGAGGAGAAAGACAAGAAAGGAACCATGAAAGAAGAAAGCTTGAAGAGTAAGTCCCTCTACTTATGTTTTGAGGAGAAGATACATCGTTTTGACAGCGCTCACGTTATTAAAACCATTCAATTGAGCGAATTGTTGGCAGCACCACCAACTGATGGTGATCATGGCACCGAACTTAAGTTAGGGACATGGATGCGGACCAGACATGGATTTTCCCTTCATGATGATAAAGAAGTGTGTGAATTTGAGACGGATCCAAGCATAGATGCGAACCCCACATTGCAGCCCTCGCAAGTGTATAAGACTAGCAGACCCGGTCCCTTCCTGGAAGAGGTGGCTGGCCAAGTATATTGTTTCGGTGGCCCGAGTTATTCCAACTCATTCGAGGTGTTTGATAGGACACAAGAGAAATGGTTGCCTCTGGATGTGCCTCCTAGGAAATATCCCCGTCCTGCAACTGTTTGTCATGCAACTGTGGGAAACAAGATGGGTAATGATCCACTGTTTGTCAAGTTGAAGTCTGATCGTGGTGATGGTGATGGTTTTCTAATGTTCTCATGTGACTTGAAACAAACTCTTACTGTTAGAGTTTTTCATGTTTGGCATGAATGTGATTCTATGAAACCTATGGAACCTCTACCACTGCCAAAATTGCCTCATACGTTTCCTATACAAGAACAATGTAAGTTCTTTCATATAGAAGATAAAAAAGTCCGTCTTGTTTTATACCATGACCGTCGTGAGTTTCATTATGATGTTTATGATTCTTATTTTGATGCTCATGATCATCATTATGATTCTGATGATGATGATGAGGTGGAGGTGGAGGTGAAGGTGAAGGTGAGGGAGGAGGAGGAGAAGGAGTGGAAGGCGTATGATTATAGCAGGAGAGAATTCATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

346

Amino Acids

40.1

Weight (kDa)

5.94

Isoelectric Point (pI)

51.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001042)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g43023 FvH4_4g00821 FvH4_6g46861 FvH4_6g50642 FvH4_6g50762 FvH4_6g50763
rosa_chinensis	RchiOBHm_Chr2g0172011
rosa_laevigata	RLG00000019866 RLG00000021935 RLG00000021943 RLG00000022032 RLG00000022034 RLG00000022036 RLG00000022038 RLG00000022040 RLG00000022042 RLG00000022044 RLG00000022046 RLG00000022049 RLG00000022051 RLG00000022068 RLG00000022070 RLG00000022080 RLG00000022083 RLG00000022086 RLG00000034562
rosa_multiflora	Rmu_sc0008262.1_g000002 Rmu_sc0012445.1_g000001 Rmu_sc0012468.1_g000010 Rmu_sc0036915.1_g000001 Rmu_ssc0000252.1_g000031 Rmu_ssc0000252.1_g000036 Rmu_ssc0000252.1_g000040
rosa_roxburghii	Rroxscaffold_2G00080270 Rroxscaffold_2G00080490
rosa_rugosa	Rorug02G0547700 Rorug02G0555600 Rorug02G0555600 Rorug02G0555700 Rorug02G0556100
rosa_samantha	Rh2BG643700 Rh2BG644000 Rh2BG644100 Rh2BG644500 Rh2BG644600 Rh2BG645800 Rh2CG610600 Rh2CG610800 Rh2CG611200 Rh2CG611500 Rh2CG611700 Rh2CG612000 Rh2DG658500 Rh2DG658800 Rh2DG658900 Rh2DG659100 Rh2DG659400 Rh2DG659700 Rh2DG660000 Rh4BG019700 Rh5BG331700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	302
AccB7I	CCANNNNNTGG	1 cut(s)	290
AciI	CCGC	4 cut(s)	19, 35, 128, 331
AclWI	GGATC	3 cut(s)	383, 396, 626
AcoI	YGGCCR	1 cut(s)	475
AcsI	RAATTY	2 cut(s)	377, 1028
AfeI	AGCGCT	1 cut(s)	235
AfiI	CCNNNNNNNGG	3 cut(s)	134, 290, 466
AflII	CTTAAG	1 cut(s)	311
AgsI	TTSAA	4 cut(s)	181, 257, 652, 703
AjnI	CCWGG	2 cut(s)	5, 459
AluBI	AGCT	2 cut(s)	54, 177
AluI	AGCT	2 cut(s)	54, 177
Alw26I	GTCTC	1 cut(s)	377
AlwI	GGATC	3 cut(s)	383, 396, 626
Ama87I	CYCGRG	1 cut(s)	499
Aor51HI	AGCGCT	1 cut(s)	235
AoxI	GGCC	4 cut(s)	3, 68, 475, 496
ApeKI	GCWGC	2 cut(s)	275, 418
ApoI	RAATTY	2 cut(s)	377, 1028
AseI	ATTAAT	1 cut(s)	98
AspA2I	CCTAGG	1 cut(s)	569
AspLEI	GCGC	1 cut(s)	236
AspS9I	GGNCC	4 cut(s)	68, 333, 452, 497
AsuC2I	CCSGG	1 cut(s)	450
AsuHPI	GGTGA	6 cut(s)	305, 677, 683, 976, 982, 988
AvaI	CYCGRG	1 cut(s)	499
AvaII	GGWCC	2 cut(s)	333, 452
AvrII	CCTAGG	1 cut(s)	569
BalI	TGGCCA	1 cut(s)	477
BamHI	GGATCC	1 cut(s)	388
BanI	GGYRCC	1 cut(s)	302
BbvI	GCAGC	2 cut(s)	287, 430
BccI	CCATC	4 cut(s)	284, 616, 662, 668
BceAI	ACGGC	1 cut(s)	32
BciT130I	CCWGG	2 cut(s)	7, 461
BclI	TGATCA	2 cut(s)	295, 919
BcnI	CCSGG	1 cut(s)	450
BcoDI	GTCTC	1 cut(s)	377
BfaI	CTAG	2 cut(s)	441, 570
BfoI	RGCGCY	1 cut(s)	237
BfrI	CTTAAG	1 cut(s)	311
BisI	GCNGC	3 cut(s)	36, 276, 419
BlnI	CCTAGG	1 cut(s)	569
BlsI	GCNGC	3 cut(s)	37, 277, 420
Bme1390I	CCNGG	3 cut(s)	7, 450, 461
Bme18I	GGWCC	2 cut(s)	333, 452
BmeT110I	CYCGRG	1 cut(s)	499
BmgT120I	GGNCC	4 cut(s)	68, 333, 452, 497
BmiI	GGNNCC	6 cut(s)	69, 160, 304, 390, 454, 768
BmrFI	CCNGG	3 cut(s)	7, 450, 461
BmrI	ACTGGG	1 cut(s)	67
BmsI	GCATC	3 cut(s)	318, 391, 901
BmuI	ACTGGG	1 cut(s)	67
Bpu10I	CCTNAGC	1 cut(s)	46
BpuMI	CCSGG	1 cut(s)	450
BsaBI	GATNNNNATC	1 cut(s)	294
BsaJI	CCNNGG	1 cut(s)	569
BsaXI	ACNNNNNCTCC	2 cut(s)	983, 1013
Bsc4I	CCNNNNNNNGG	3 cut(s)	134, 290, 466
Bse1I	ACTGG	1 cut(s)	62
Bse3DI	GCAATG	1 cut(s)	413
Bse8I	GATNNNNATC	1 cut(s)	294
BseBI	CCWGG	2 cut(s)	7, 461
BseDI	CCNNGG	1 cut(s)	569
BseGI	GGATG	2 cut(s)	333, 565
BseJI	GATNNNNATC	1 cut(s)	294
BseLI	CCNNNNNNNGG	3 cut(s)	134, 290, 466
BseMI	GCAATG	1 cut(s)	413
BseNI	ACTGG	1 cut(s)	62
BseRI	GAGGAG	5 cut(s)	155, 224, 998, 1001, 1004
BseXI	GCAGC	2 cut(s)	287, 430
BshFI	GGCC	4 cut(s)	5, 70, 477, 498
BshNI	GGYRCC	1 cut(s)	302
BsiHKCI	CYCGRG	1 cut(s)	499
BsiSI	CCGG	1 cut(s)	450
BslFI	GGGAC	3 cut(s)	175, 334, 438
BslI	CCNNNNNNNGG	3 cut(s)	134, 290, 466
BsmAI	GTCTC	1 cut(s)	377
BsmBI	CGTCTC	1 cut(s)	377
BsmFI	GGGAC	3 cut(s)	175, 334, 438
BsnI	GGCC	4 cut(s)	5, 70, 477, 498
BsoBI	CYCGRG	1 cut(s)	499
Bsp143I	GATC	5 cut(s)	295, 388, 631, 658, 919
BspACI	CCGC	4 cut(s)	19, 35, 128, 331
BspANI	GGCC	4 cut(s)	5, 70, 477, 498
BspHI	TCATGA	2 cut(s)	355, 916
BspLI	GGNNCC	6 cut(s)	69, 160, 304, 390, 454, 768
BspPI	GGATC	3 cut(s)	383, 396, 626
BspT107I	GGYRCC	1 cut(s)	302
BspTI	CTTAAG	1 cut(s)	311
BsrDI	GCAATG	1 cut(s)	413
BsrI	ACTGG	1 cut(s)	62
BssECI	CCNNGG	1 cut(s)	569
BssMI	GATC	5 cut(s)	295, 388, 631, 658, 919
BssT1I	CCWWGG	1 cut(s)	569
Bst2UI	CCWGG	2 cut(s)	7, 461
Bst4CI	ACNGT	5 cut(s)	595, 610, 639, 718, 872
Bst6I	CTCTTC	2 cut(s)	176, 459
BstAFI	CTTAAG	1 cut(s)	311
BstC8I	GCNNGC	2 cut(s)	52, 475
BstDEI	CTNAG	1 cut(s)	46
BstENI	CCTNNNNNAGG	1 cut(s)	464
BstF5I	GGATG	2 cut(s)	333, 565
BstH2I	RGCGCY	1 cut(s)	237
BstHHI	GCGC	1 cut(s)	236
BstKTI	GATC	5 cut(s)	298, 391, 634, 661, 922
BstMAI	GTCTC	1 cut(s)	377
BstMBI	GATC	5 cut(s)	295, 388, 631, 658, 919
BstMWI	GCNNNNNNNGC	5 cut(s)	35, 41, 122, 424, 787
BstNI	CCWGG	2 cut(s)	7, 461
BstNSI	RCATGY	1 cut(s)	88
BstSCI	CCNGG	3 cut(s)	5, 448, 459
BstV1I	GCAGC	2 cut(s)	287, 430
BstX2I	RGATCY	1 cut(s)	388
BstYI	RGATCY	1 cut(s)	388
BsuRI	GGCC	4 cut(s)	5, 70, 477, 498
BtsCI	GGATG	2 cut(s)	333, 565
BtsI	GCAGTG	1 cut(s)	776
BtsIMutI	CAGTG	2 cut(s)	635, 776
Cac8I	GCNNGC	2 cut(s)	52, 475
CciI	TCATGA	2 cut(s)	355, 916
CfoI	GCGC	1 cut(s)	236
Cfr13I	GGNCC	4 cut(s)	68, 333, 452, 497
CviJI	RGCY	9 cut(s)	5, 44, 54, 70, 177, 421, 473, 477, 498
CviKI_1	RGCY	9 cut(s)	5, 44, 54, 70, 177, 421, 473, 477, 498
DdeI	CTNAG	1 cut(s)	46
DpnI	GATC	5 cut(s)	297, 390, 633, 660, 921
DpnII	GATC	5 cut(s)	295, 388, 631, 658, 919
EaeI	YGGCCR	1 cut(s)	475
Eam1104I	CTCTTC	2 cut(s)	176, 459
EarI	CTCTTC	2 cut(s)	176, 459
Eco130I	CCWWGG	1 cut(s)	569
Eco47I	GGWCC	2 cut(s)	333, 452
Eco47III	AGCGCT	1 cut(s)	235
Eco88I	CYCGRG	1 cut(s)	499
EcoNI	CCTNNNNNAGG	1 cut(s)	464
EcoRI	GAATTC	1 cut(s)	1028
EcoRII	CCWGG	2 cut(s)	5, 459
EcoT14I	CCWWGG	1 cut(s)	569
ErhI	CCWWGG	1 cut(s)	569
Esp3I	CGTCTC	1 cut(s)	377
FalI	AAGNNNNNCTT	2 cut(s)	837, 869
FaqI	GGGAC	3 cut(s)	175, 334, 438
FbaI	TGATCA	2 cut(s)	295, 919
Fnu4HI	GCNGC	3 cut(s)	36, 276, 419
FokI	GGATG	2 cut(s)	340, 572
Fsp4HI	GCNGC	3 cut(s)	36, 276, 419
FspBI	CTAG	2 cut(s)	441, 570
GlaI	GCGC	1 cut(s)	235
GluI	GCNGC	3 cut(s)	36, 276, 419
HaeII	RGCGCY	1 cut(s)	237
HaeIII	GGCC	4 cut(s)	5, 70, 477, 498
HapII	CCGG	1 cut(s)	450
HhaI	GCGC	1 cut(s)	236
Hin6I	GCGC	1 cut(s)	234
HinP1I	GCGC	1 cut(s)	234
HindIII	AAGCTT	1 cut(s)	175
HinfI	GANTC	3 cut(s)	749, 899, 932
HpaII	CCGG	1 cut(s)	450
HphI	GGTGA	6 cut(s)	305, 677, 683, 976, 982, 988
Hpy188I	TCNGA	3 cut(s)	104, 658, 937
Hpy188III	TCNNGA	5 cut(s)	93, 356, 557, 875, 917
Hpy99I	CGWCG	1 cut(s)	876
HpyAV	CCTTC	7 cut(s)	58, 362, 466, 961, 967, 988, 997
HpyCH4III	ACNGT	5 cut(s)	595, 610, 639, 718, 872
HpyCH4IV	ACGT	2 cut(s)	240, 797
HpyCH4V	TGCA	4 cut(s)	24, 418, 590, 605
HpyF10VI	GCNNNNNNNGC	5 cut(s)	35, 41, 122, 424, 787
HpyF3I	CTNAG	1 cut(s)	46
HpySE526I	ACGT	2 cut(s)	240, 797
HspAI	GCGC	1 cut(s)	234
Ksp22I	TGATCA	2 cut(s)	295, 919
Kzo9I	GATC	5 cut(s)	295, 388, 631, 658, 919
Lsp1109I	GCAGC	2 cut(s)	287, 430
LweI	GCATC	3 cut(s)	318, 391, 901
MaeI	CTAG	2 cut(s)	441, 570
MaeII	ACGT	2 cut(s)	240, 797
MaeIII	GTNAC	1 cut(s)	695
MalI	GATC	5 cut(s)	297, 390, 633, 660, 921
MboI	GATC	5 cut(s)	295, 388, 631, 658, 919
MboII	GAAGA	7 cut(s)	85, 117, 182, 193, 226, 476, 848
MfeI	CAATTG	1 cut(s)	257
MflI	RGATCY	1 cut(s)	388
MlsI	TGGCCA	1 cut(s)	477
MluCI	AATT	7 cut(s)	78, 109, 257, 266, 377, 785, 1028
MluNI	TGGCCA	1 cut(s)	477
MmeI	TCCRAC	1 cut(s)	534
Mox20I	TGGCCA	1 cut(s)	477
MscI	TGGCCA	1 cut(s)	477
MseI	TTAA	3 cut(s)	98, 246, 312
MslI	CAYNNNNRTG	3 cut(s)	744, 888, 927
Msp20I	TGGCCA	1 cut(s)	477
MspA1I	CMGCKG	1 cut(s)	35
MspCI	CTTAAG	1 cut(s)	311
MspI	CCGG	1 cut(s)	450
MspR9I	CCNGG	3 cut(s)	7, 450, 461
MunI	CAATTG	1 cut(s)	257
MvaI	CCWGG	2 cut(s)	7, 461
MwoI	GCNNNNNNNGC	5 cut(s)	35, 41, 122, 424, 787
NciI	CCSGG	1 cut(s)	450
NdeII	GATC	5 cut(s)	295, 388, 631, 658, 919
NlaIV	GGNNCC	6 cut(s)	69, 160, 304, 390, 454, 768
NmuCI	GTSAC	1 cut(s)	695
NspI	RCATGY	1 cut(s)	88
PagI	TCATGA	2 cut(s)	355, 916
PfeI	GAWTC	3 cut(s)	749, 899, 932
PflFI	GACNNNGTC	1 cut(s)	450
PflMI	CCANNNNNTGG	1 cut(s)	290
PfoI	TCCNGGA	1 cut(s)	459
PkrI	GCNGC	3 cut(s)	37, 277, 420
PshBI	ATTAAT	1 cut(s)	98
Psp6I	CCWGG	2 cut(s)	5, 459
PspGI	CCWGG	2 cut(s)	5, 459
PspN4I	GGNNCC	6 cut(s)	69, 160, 304, 390, 454, 768
PspPI	GGNCC	4 cut(s)	68, 333, 452, 497
PsuI	RGATCY	1 cut(s)	388
PsyI	GACNNNGTC	1 cut(s)	450
RseI	CAYNNNNRTG	3 cut(s)	744, 888, 927
SaqAI	TTAA	3 cut(s)	98, 246, 312
SatI	GCNGC	3 cut(s)	36, 276, 419
Sau3AI	GATC	5 cut(s)	295, 388, 631, 658, 919
Sau96I	GGNCC	4 cut(s)	68, 333, 452, 497
ScrFI	CCNGG	3 cut(s)	7, 450, 461
SfaNI	GCATC	3 cut(s)	318, 391, 901
SinI	GGWCC	2 cut(s)	333, 452
SmiMI	CAYNNNNRTG	3 cut(s)	744, 888, 927
SmlI	CTYRAG	1 cut(s)	311
SmoI	CTYRAG	1 cut(s)	311
Sse9I	AATT	7 cut(s)	78, 109, 257, 266, 377, 785, 1028
SsiI	CCGC	4 cut(s)	19, 35, 128, 331
SspMI	CTAG	2 cut(s)	441, 570
StyD4I	CCNGG	3 cut(s)	5, 448, 459
StyI	CCWWGG	1 cut(s)	569
TaaI	ACNGT	5 cut(s)	595, 610, 639, 718, 872
TaiI	ACGT	2 cut(s)	243, 800
TaqI	TCGA	1 cut(s)	519
TasI	AATT	7 cut(s)	78, 109, 257, 266, 377, 785, 1028
TauI	GCSGC	1 cut(s)	38
TfiI	GAWTC	3 cut(s)	749, 899, 932
Tru1I	TTAA	3 cut(s)	98, 246, 312
Tru9I	TTAA	3 cut(s)	98, 246, 312
TscAI	CASTG	2 cut(s)	642, 783
TseFI	GTSAC	1 cut(s)	695
TseI	GCWGC	2 cut(s)	275, 418
Tsp45I	GTSAC	1 cut(s)	695
TspDTI	ATGAA	8 cut(s)	179, 344, 719, 756, 770, 818, 872, 1021
TspGWI	ACGGA	2 cut(s)	401, 839
TspRI	CASTG	2 cut(s)	642, 783
Tth111I	GACNNNGTC	1 cut(s)	450
Van91I	CCANNNNNTGG	1 cut(s)	290
Vha464I	CTTAAG	1 cut(s)	311
VpaK11BI	GGWCC	2 cut(s)	333, 452
VspI	ATTAAT	1 cut(s)	98
XagI	CCTNNNNNAGG	1 cut(s)	464
XapI	RAATTY	2 cut(s)	377, 1028
XceI	RCATGY	1 cut(s)	88
XmaJI	CCTAGG	1 cut(s)	569
XspI	CTAG	2 cut(s)	441, 570

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.