Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0001042

Physical Location & Seq

Genomic Coordinates Forward (+)

78865372 .. 78871710

Gene Structure 6339 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG610800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGAGTACTGGTGTCATCGGCTCCAAAATTATTTTCTCTGGTGGCAAGGTTTTTCCTCCGGTACAACATCATCATATTTTTGAATATTCACTAAGCAAAGAAGTTTGTGTGTTTGAGACAGATCCAAGCACAGATCCAAACCCAAAATTGCAGCCTTCCCAAGTTTTTAAGGTTAGTAGACCTGAACCTGTTTTAGTTGAGGTGGATGACAAACTTTATCGCTTCGGTGGTCTATGTAACTGTGAGTCATTCGAGGTATTTGAACCAATACAGGATGACTGGTTGCCTCTGGATGCGCCTCCTCGGAAGTATCCCTATGGCTTCACTCATGCAATTGCAGGCACCAAAATCCTACTCTGGGGCAGAAATCAGACCGGAGTGTACATGTTTGACGCGACCCATCCAGAAAAAGGATGGACAGAATTGGACTCTTGTTTGGGAGGCTATATTCCCTTTATTGATGGTTATGATCAACTATTTATCAAGTTTCATCATGGTGATGTGCAGCACTCCCCTCACACCATCGGTCAATTATCTAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00020 ko00190 ko01100 ko01110 ko01120 ko01130 ko01200 ko03015 ko03040 ko04714 ko04932 ko05010 ko05012 ko05016 map00020 map00190 map01100 map01110 map01120 map01130 map01200 map03015 map03040 map04714 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

RRM_1

Protein Analysis

180

Amino Acids

20.31

Weight (kDa)

5.5

Isoelectric Point (pI)

41.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001042)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g43023 FvH4_4g00821 FvH4_6g46861 FvH4_6g50642 FvH4_6g50762 FvH4_6g50763
rosa_chinensis	RchiOBHm_Chr2g0172011
rosa_laevigata	RLG00000019866 RLG00000021935 RLG00000021943 RLG00000022032 RLG00000022034 RLG00000022036 RLG00000022038 RLG00000022040 RLG00000022042 RLG00000022044 RLG00000022046 RLG00000022049 RLG00000022051 RLG00000022068 RLG00000022070 RLG00000022080 RLG00000022083 RLG00000022086 RLG00000034562
rosa_multiflora	Rmu_sc0008262.1_g000002 Rmu_sc0012445.1_g000001 Rmu_sc0012468.1_g000010 Rmu_sc0036915.1_g000001 Rmu_ssc0000252.1_g000031 Rmu_ssc0000252.1_g000036 Rmu_ssc0000252.1_g000040
rosa_roxburghii	Rroxscaffold_2G00080270 Rroxscaffold_2G00080490
rosa_rugosa	Rorug02G0547700 Rorug02G0555600 Rorug02G0555600 Rorug02G0555700 Rorug02G0556100
rosa_samantha	Rh2BG643700 Rh2BG644000 Rh2BG644100 Rh2BG644500 Rh2BG644600 Rh2BG645800 Rh2CG610600 Rh2CG610800 Rh2CG611200 Rh2CG611500 Rh2CG611700 Rh2CG612000 Rh2DG658500 Rh2DG658800 Rh2DG658900 Rh2DG659100 Rh2DG659400 Rh2DG659700 Rh2DG660000 Rh4BG019700 Rh5BG331700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	341
AccI	GTMKAC	1 cut(s)	178
AccII	CGCG	1 cut(s)	395
AclWI	GGATC	2 cut(s)	116, 128
AfaI	GTAC	3 cut(s)	7, 63, 383
AfiI	CCNNNNNNNGG	2 cut(s)	358, 410
AflIII	ACRYGT	1 cut(s)	384
AgsI	TTSAA	2 cut(s)	83, 263
AjuI	GAANNNNNNNTTGG	2 cut(s)	17, 49
Alw26I	GTCTC	1 cut(s)	110
AlwI	GGATC	2 cut(s)	116, 128
ApeKI	GCWGC	2 cut(s)	151, 505
AspLEI	GCGC	1 cut(s)	298
AsuHPI	GGTGA	1 cut(s)	509
BanI	GGYRCC	1 cut(s)	341
BbvI	GCAGC	2 cut(s)	163, 517
BccI	CCATC	4 cut(s)	408, 408, 455, 530
BciVI	GTATCC	1 cut(s)	321
BclI	TGATCA	1 cut(s)	469
BcoDI	GTCTC	1 cut(s)	110
BfuI	GTATCC	1 cut(s)	321
BisI	GCNGC	2 cut(s)	152, 506
BlsI	GCNGC	2 cut(s)	153, 507
BmcAI	AGTACT	1 cut(s)	7
BmiI	GGNNCC	2 cut(s)	22, 343
BmsI	GCATC	1 cut(s)	283
BsaJI	CCNNGG	1 cut(s)	302
BsaWI	WCCGGW	2 cut(s)	58, 374
Bsc4I	CCNNNNNNNGG	2 cut(s)	358, 410
Bse1I	ACTGG	2 cut(s)	13, 284
BseDI	CCNNGG	1 cut(s)	302
BseGI	GGATG	5 cut(s)	211, 280, 298, 400, 419
BseLI	CCNNNNNNNGG	2 cut(s)	358, 410
BseNI	ACTGG	2 cut(s)	13, 284
BseRI	GAGGAG	1 cut(s)	291
BseXI	GCAGC	2 cut(s)	163, 517
BsgI	GTGCAG	1 cut(s)	524
Bsh1236I	CGCG	1 cut(s)	395
BshNI	GGYRCC	1 cut(s)	341
BsiSI	CCGG	2 cut(s)	59, 375
BslI	CCNNNNNNNGG	2 cut(s)	358, 410
BsmAI	GTCTC	1 cut(s)	110
Bsp1407I	TGTACA	1 cut(s)	381
Bsp143I	GATC	3 cut(s)	121, 133, 469
BspFNI	CGCG	1 cut(s)	395
BspLI	GGNNCC	2 cut(s)	22, 343
BspPI	GGATC	2 cut(s)	116, 128
BspT107I	GGYRCC	1 cut(s)	341
BsrGI	TGTACA	1 cut(s)	381
BsrI	ACTGG	2 cut(s)	13, 284
BssECI	CCNNGG	1 cut(s)	302
BssMI	GATC	3 cut(s)	121, 133, 469
Bst4CI	ACNGT	1 cut(s)	242
BstAUI	TGTACA	1 cut(s)	381
BstC8I	GCNNGC	1 cut(s)	340
BstDEI	CTNAG	1 cut(s)	92
BstF5I	GGATG	5 cut(s)	211, 280, 298, 400, 419
BstFNI	CGCG	1 cut(s)	395
BstHHI	GCGC	1 cut(s)	298
BstKTI	GATC	3 cut(s)	124, 136, 472
BstMAI	GTCTC	1 cut(s)	110
BstMBI	GATC	3 cut(s)	121, 133, 469
BstNSI	RCATGY	1 cut(s)	388
BstUI	CGCG	1 cut(s)	395
BstV1I	GCAGC	2 cut(s)	163, 517
BstX2I	RGATCY	2 cut(s)	121, 133
BstYI	RGATCY	2 cut(s)	121, 133
BsuI	GTATCC	1 cut(s)	321
BtsCI	GGATG	5 cut(s)	211, 280, 298, 400, 419
Cac8I	GCNNGC	1 cut(s)	340
CfoI	GCGC	1 cut(s)	298
CseI	GACGC	1 cut(s)	401
Csp6I	GTAC	3 cut(s)	6, 62, 382
CviAII	CATG	3 cut(s)	329, 385, 494
CviJI	RGCY	4 cut(s)	21, 154, 321, 444
CviKI_1	RGCY	4 cut(s)	21, 154, 321, 444
CviQI	GTAC	3 cut(s)	6, 62, 382
DdeI	CTNAG	1 cut(s)	92
DpnI	GATC	3 cut(s)	123, 135, 471
DpnII	GATC	3 cut(s)	121, 133, 469
FaeI	CATG	3 cut(s)	332, 388, 497
FaiI	YATR	8 cut(s)	75, 235, 318, 330, 386, 447, 468, 495
FatI	CATG	3 cut(s)	328, 384, 493
FbaI	TGATCA	1 cut(s)	469
FblI	GTMKAC	1 cut(s)	178
Fnu4HI	GCNGC	2 cut(s)	152, 506
FokI	GGATG	5 cut(s)	218, 287, 305, 387, 426
Fsp4HI	GCNGC	2 cut(s)	152, 506
GlaI	GCGC	1 cut(s)	297
GluI	GCNGC	2 cut(s)	152, 506
HapII	CCGG	2 cut(s)	59, 375
HgaI	GACGC	1 cut(s)	401
HhaI	GCGC	1 cut(s)	298
Hin1II	CATG	3 cut(s)	332, 388, 497
Hin6I	GCGC	1 cut(s)	296
HinP1I	GCGC	1 cut(s)	296
HinfI	GANTC	2 cut(s)	245, 428
HpaII	CCGG	2 cut(s)	59, 375
HphI	GGTGA	1 cut(s)	509
Hpy166II	GTNNAC	2 cut(s)	179, 382
Hpy188I	TCNGA	2 cut(s)	306, 372
Hpy188III	TCNNGA	2 cut(s)	290, 404
Hpy8I	GTNNAC	2 cut(s)	179, 382
HpyAV	CCTTC	1 cut(s)	165
HpyCH4III	ACNGT	1 cut(s)	242
HpyCH4V	TGCA	4 cut(s)	151, 332, 338, 505
HpyF3I	CTNAG	1 cut(s)	92
Hsp92II	CATG	3 cut(s)	332, 388, 497
HspAI	GCGC	1 cut(s)	296
Ksp22I	TGATCA	1 cut(s)	469
Kzo9I	GATC	3 cut(s)	121, 133, 469
LmnI	GCTCC	1 cut(s)	26
Lsp1109I	GCAGC	2 cut(s)	163, 517
LweI	GCATC	1 cut(s)	283
MaeIII	GTNAC	1 cut(s)	236
MalI	GATC	3 cut(s)	123, 135, 471
MboI	GATC	3 cut(s)	121, 133, 469
MfeI	CAATTG	1 cut(s)	333
MflI	RGATCY	2 cut(s)	121, 133
MluCI	AATT	5 cut(s)	27, 146, 333, 422, 530
MlyI	GAGTC	2 cut(s)	254, 422
MnlI	CCTC	8 cut(s)	66, 193, 247, 297, 309, 312, 434, 525
MseI	TTAA	1 cut(s)	168
MslI	CAYNNNNRTG	2 cut(s)	495, 498
MspI	CCGG	2 cut(s)	59, 375
MunI	CAATTG	1 cut(s)	333
MvnI	CGCG	1 cut(s)	395
NdeII	GATC	3 cut(s)	121, 133, 469
NlaIII	CATG	3 cut(s)	332, 388, 497
NlaIV	GGNNCC	2 cut(s)	22, 343
NspI	RCATGY	1 cut(s)	388
PciI	ACATGT	1 cut(s)	384
PkrI	GCNGC	2 cut(s)	153, 507
PleI	GAGTC	2 cut(s)	253, 422
PpsI	GAGTC	2 cut(s)	253, 422
PscI	ACATGT	1 cut(s)	384
PspN4I	GGNNCC	2 cut(s)	22, 343
PsuI	RGATCY	2 cut(s)	121, 133
RsaI	GTAC	3 cut(s)	7, 63, 383
RsaNI	GTAC	3 cut(s)	6, 62, 382
RseI	CAYNNNNRTG	2 cut(s)	495, 498
SaqAI	TTAA	1 cut(s)	168
SatI	GCNGC	2 cut(s)	152, 506
Sau3AI	GATC	3 cut(s)	121, 133, 469
ScaI	AGTACT	1 cut(s)	7
SchI	GAGTC	2 cut(s)	254, 422
SetI	ASST	6 cut(s)	51, 174, 184, 190, 204, 258
SfaNI	GCATC	1 cut(s)	283
SmiMI	CAYNNNNRTG	2 cut(s)	495, 498
Sse9I	AATT	5 cut(s)	27, 146, 333, 422, 530
SspI	AATATT	1 cut(s)	86
TaaI	ACNGT	1 cut(s)	242
TaqI	TCGA	1 cut(s)	252
TaqII	GACCGA	1 cut(s)	515
TasI	AATT	5 cut(s)	27, 146, 333, 422, 530
TatI	WGTACW	2 cut(s)	5, 381
Tru1I	TTAA	1 cut(s)	168
Tru9I	TTAA	1 cut(s)	168
TseI	GCWGC	2 cut(s)	151, 505
TspDTI	ATGAA	1 cut(s)	479
XceI	RCATGY	1 cut(s)	388
XcmI	CCANNNNNNNNNTGG	1 cut(s)	411
XmiI	GTMKAC	1 cut(s)	178
ZrmI	AGTACT	1 cut(s)	7

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.