Rroxscaffold_2G00080490

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0001042
Physical Location & Seq
Reverse (-)
3453318 .. 3479487
26170 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00080490.1

Sequence Viewer

Length: 477 bp
ATGGCGTGGTGTAGGCGGCACTGTTTTGCAATGTTGGAAGGTTTTGCAACCAGAAGAGCAGCGTCCGCGGCGGCTACGTCAACGTTAGCAAGCAACTGGAAGAATGAGACGAAGAAAAGTAGTATGTTTTCAGAATTTATAAGAAGAAATTCTTCTACTTTAGCAACACTTAAGGCAGAGGAGAAAAAGAAGAAAGGAATCATGGAAGAAGAAAGCTTTAAATTAAGCCATCTGTTGGCACCACCAGTACATGGCAGCGATGATCTGAAATTACAGAGAGTTGCTTATAGATGTGGACCGGATACCGTTGTTCCCCTACATATGAGTACTGGTGTCGTCGGCTCCAAAATTATTTTCTCTGGTGGCAAGGTTTTTCCTCCTGTACAGCCTTCTCATACTTTTGAATATTCACTAAGAGACAGATCCAAGCATAGATCCAAATCCGAGATTGCAGCCCTCCCAAGTTTTCAAGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

158

Amino Acids

17.6

Weight (kDa)

9.82

Isoelectric Point (pI)

53.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 140
AccB1I GGYRCC 1 cut(s) 238
AccB7I CCANNNNNTGG 2 cut(s) 235, 251
AccII CGCG 1 cut(s) 68
AciI CCGC 4 cut(s) 16, 66, 68, 71
AclI AACGTT 1 cut(s) 83
AclWI GGATC 2 cut(s) 417, 429
AcsI RAATTY 2 cut(s) 134, 148
AfaI GTAC 3 cut(s) 249, 328, 384
AfiI CCNNNNNNNGG 2 cut(s) 235, 251
AflII CTTAAG 1 cut(s) 170
AgsI TTSAA 2 cut(s) 404, 470
AjuI GAANNNNNNNTTGG 2 cut(s) 338, 370
AluBI AGCT 1 cut(s) 216
AluI AGCT 1 cut(s) 216
Alw26I GTCTC 2 cut(s) 101, 411
AlwI GGATC 2 cut(s) 417, 429
ApeKI GCWGC 3 cut(s) 59, 255, 452
ApoI RAATTY 2 cut(s) 134, 148
Asp700I GAANNNNTTC 2 cut(s) 148, 151
AspS9I GGNCC 1 cut(s) 296
AvaII GGWCC 1 cut(s) 296
BaeI ACNNNNGTAYC 2 cut(s) 294, 327
BanI GGYRCC 1 cut(s) 238
BbvI GCAGC 3 cut(s) 71, 267, 464
BccI CCATC 1 cut(s) 237
BciVI GTATCC 1 cut(s) 295
BcoDI GTCTC 2 cut(s) 101, 411
BfrI CTTAAG 1 cut(s) 170
BfuI GTATCC 1 cut(s) 295
BisI GCNGC 6 cut(s) 17, 60, 69, 72, 256, 453
BlsI GCNGC 6 cut(s) 18, 61, 70, 73, 257, 454
BmcAI AGTACT 1 cut(s) 328
Bme18I GGWCC 1 cut(s) 296
BmgT120I GGNCC 1 cut(s) 296
BmiI GGNNCC 2 cut(s) 240, 343
BsaBI GATNNNNATC 1 cut(s) 439
BsaJI CCNNGG 1 cut(s) 66
BsaWI WCCGGW 1 cut(s) 298
Bsc4I CCNNNNNNNGG 2 cut(s) 235, 251
Bse1I ACTGG 3 cut(s) 101, 245, 334
Bse3DI GCAATG 1 cut(s) 36
Bse8I GATNNNNATC 1 cut(s) 439
BseDI CCNNGG 1 cut(s) 66
BseJI GATNNNNATC 1 cut(s) 439
BseLI CCNNNNNNNGG 2 cut(s) 235, 251
BseMI GCAATG 1 cut(s) 36
BseNI ACTGG 3 cut(s) 101, 245, 334
BseRI GAGGAG 1 cut(s) 194
BseXI GCAGC 3 cut(s) 71, 267, 464
Bsh1236I CGCG 1 cut(s) 68
BshNI GGYRCC 1 cut(s) 238
BsiSI CCGG 1 cut(s) 299
BslI CCNNNNNNNGG 2 cut(s) 235, 251
BsmAI GTCTC 2 cut(s) 101, 411
BsmBI CGTCTC 1 cut(s) 101
Bsp1407I TGTACA 1 cut(s) 382
Bsp143I GATC 3 cut(s) 262, 422, 434
BspACI CCGC 4 cut(s) 16, 66, 68, 71
BspFNI CGCG 1 cut(s) 68
BspLI GGNNCC 2 cut(s) 240, 343
BspPI GGATC 2 cut(s) 417, 429
BspQI GCTCTTC 1 cut(s) 49
BspT107I GGYRCC 1 cut(s) 238
BspTI CTTAAG 1 cut(s) 170
BsrDI GCAATG 1 cut(s) 36
BsrGI TGTACA 1 cut(s) 382
BsrI ACTGG 3 cut(s) 101, 245, 334
BssECI CCNNGG 1 cut(s) 66
BssMI GATC 3 cut(s) 262, 422, 434
Bst4CI ACNGT 2 cut(s) 23, 307
Bst6I CTCTTC 1 cut(s) 49
BstAFI CTTAAG 1 cut(s) 170
BstAUI TGTACA 1 cut(s) 382
BstC8I GCNNGC 1 cut(s) 91
BstDEI CTNAG 1 cut(s) 413
BstDSI CCRYGG 1 cut(s) 66
BstFNI CGCG 1 cut(s) 68
BstKTI GATC 3 cut(s) 265, 425, 437
BstMAI GTCTC 2 cut(s) 101, 411
BstMBI GATC 3 cut(s) 262, 422, 434
BstMWI GCNNNNNNNGC 2 cut(s) 65, 68
BstUI CGCG 1 cut(s) 68
BstV1I GCAGC 3 cut(s) 71, 267, 464
BstX2I RGATCY 2 cut(s) 422, 434
BstYI RGATCY 2 cut(s) 422, 434
BsuI GTATCC 1 cut(s) 295
BtgI CCRYGG 1 cut(s) 66
BtgZI GCGATG 1 cut(s) 273
BtsIMutI CAGTG 1 cut(s) 19
Cac8I GCNNGC 1 cut(s) 91
Cfr13I GGNCC 1 cut(s) 296
Cfr42I CCGCGG 1 cut(s) 69
CseI GACGC 1 cut(s) 51
Csp6I GTAC 3 cut(s) 248, 327, 383
CviAII CATG 2 cut(s) 202, 251
CviJI RGCY 6 cut(s) 74, 216, 228, 342, 388, 455
CviKI_1 RGCY 6 cut(s) 74, 216, 228, 342, 388, 455
CviQI GTAC 3 cut(s) 248, 327, 383
DdeI CTNAG 1 cut(s) 413
DpnI GATC 3 cut(s) 264, 424, 436
DpnII GATC 3 cut(s) 262, 422, 434
DraI TTTAAA 1 cut(s) 220
Eam1104I CTCTTC 1 cut(s) 49
EarI CTCTTC 1 cut(s) 49
Eco47I GGWCC 1 cut(s) 296
Esp3I CGTCTC 1 cut(s) 101
FaeI CATG 2 cut(s) 205, 254
FaiI YATR 9 cut(s) 125, 140, 203, 252, 288, 321, 323, 396, 432
FalI AAGNNNNNCTT 2 cut(s) 136, 168
FatI CATG 2 cut(s) 201, 250
FauNDI CATATG 1 cut(s) 321
Fnu4HI GCNGC 6 cut(s) 17, 60, 69, 72, 256, 453
Fsp4HI GCNGC 6 cut(s) 17, 60, 69, 72, 256, 453
GluI GCNGC 6 cut(s) 17, 60, 69, 72, 256, 453
HapII CCGG 1 cut(s) 299
HgaI GACGC 1 cut(s) 51
Hin1II CATG 2 cut(s) 205, 254
HincII GTYRAC 1 cut(s) 81
HindII GTYRAC 1 cut(s) 81
HindIII AAGCTT 1 cut(s) 214
HinfI GANTC 1 cut(s) 198
HpaII CCGG 1 cut(s) 299
Hpy166II GTNNAC 2 cut(s) 81, 296
Hpy188I TCNGA 3 cut(s) 133, 267, 445
Hpy188III TCNNGA 1 cut(s) 470
Hpy8I GTNNAC 2 cut(s) 81, 296
Hpy99I CGWCG 1 cut(s) 341
HpyAV CCTTC 2 cut(s) 32, 399
HpyCH4III ACNGT 2 cut(s) 23, 307
HpyCH4IV ACGT 2 cut(s) 77, 83
HpyCH4V TGCA 3 cut(s) 29, 47, 452
HpyF10VI GCNNNNNNNGC 2 cut(s) 65, 68
HpyF3I CTNAG 1 cut(s) 413
HpySE526I ACGT 2 cut(s) 77, 83
Hsp92II CATG 2 cut(s) 205, 254
KspI CCGCGG 1 cut(s) 69
Kzo9I GATC 3 cut(s) 262, 422, 434
LguI GCTCTTC 1 cut(s) 49
LmnI GCTCC 1 cut(s) 347
LpnPI CCDG 7 cut(s) 64, 82, 258, 312, 315, 345, 393
Lsp1109I GCAGC 3 cut(s) 71, 267, 464
MaeII ACGT 2 cut(s) 77, 83
MalI GATC 3 cut(s) 264, 424, 436
MboI GATC 3 cut(s) 262, 422, 434
MboII GAAGA 8 cut(s) 66, 112, 124, 144, 156, 202, 218, 221
MflI RGATCY 2 cut(s) 422, 434
MluCI AATT 5 cut(s) 134, 148, 221, 269, 348
MmeI TCCRAC 1 cut(s) 15
MnlI CCTC 3 cut(s) 172, 387, 467
MroXI GAANNNNTTC 2 cut(s) 148, 151
MseI TTAA 3 cut(s) 171, 219, 224
MspA1I CMGCKG 1 cut(s) 68
MspCI CTTAAG 1 cut(s) 170
MspI CCGG 1 cut(s) 299
MvnI CGCG 1 cut(s) 68
MwoI GCNNNNNNNGC 2 cut(s) 65, 68
NdeI CATATG 1 cut(s) 321
NdeII GATC 3 cut(s) 262, 422, 434
NlaIII CATG 2 cut(s) 205, 254
NlaIV GGNNCC 2 cut(s) 240, 343
PciSI GCTCTTC 1 cut(s) 49
PdmI GAANNNNTTC 2 cut(s) 148, 151
PfeI GAWTC 1 cut(s) 198
PflMI CCANNNNNTGG 2 cut(s) 235, 251
PkrI GCNGC 6 cut(s) 18, 61, 70, 73, 257, 454
PsiI TTATAA 1 cut(s) 140
Psp1406I AACGTT 1 cut(s) 83
PspN4I GGNNCC 2 cut(s) 240, 343
PspPI GGNCC 1 cut(s) 296
PsuI RGATCY 2 cut(s) 422, 434
RsaI GTAC 3 cut(s) 249, 328, 384
RsaNI GTAC 3 cut(s) 248, 327, 383
SacII CCGCGG 1 cut(s) 69
SapI GCTCTTC 1 cut(s) 49
SaqAI TTAA 3 cut(s) 171, 219, 224
SatI GCNGC 6 cut(s) 17, 60, 69, 72, 256, 453
Sau3AI GATC 3 cut(s) 262, 422, 434
Sau96I GGNCC 1 cut(s) 296
ScaI AGTACT 1 cut(s) 328
SetI ASST 5 cut(s) 43, 80, 86, 218, 372
Sfr303I CCGCGG 1 cut(s) 69
SgrBI CCGCGG 1 cut(s) 69
SinI GGWCC 1 cut(s) 296
SmlI CTYRAG 1 cut(s) 170
SmoI CTYRAG 1 cut(s) 170
Sse9I AATT 5 cut(s) 134, 148, 221, 269, 348
SsiI CCGC 4 cut(s) 16, 66, 68, 71
SspI AATATT 1 cut(s) 407
TaaI ACNGT 2 cut(s) 23, 307
TaiI ACGT 2 cut(s) 80, 86
TasI AATT 5 cut(s) 134, 148, 221, 269, 348
TatI WGTACW 3 cut(s) 247, 326, 382
TauI GCSGC 3 cut(s) 19, 71, 74
TfiI GAWTC 1 cut(s) 198
Tru1I TTAA 3 cut(s) 171, 219, 224
Tru9I TTAA 3 cut(s) 171, 219, 224
TscAI CASTG 1 cut(s) 26
TseI GCWGC 3 cut(s) 59, 255, 452
TspRI CASTG 1 cut(s) 26
Van91I CCANNNNNTGG 2 cut(s) 235, 251
Vha464I CTTAAG 1 cut(s) 170
VpaK11BI GGWCC 1 cut(s) 296
XapI RAATTY 2 cut(s) 134, 148
XmnI GAANNNNTTC 2 cut(s) 148, 151
ZrmI AGTACT 1 cut(s) 328
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.