Rh2BG644600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0001042
Physical Location & Seq
Reverse (-)
86451973 .. 86453424
1452 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG644600.1

Sequence Viewer

Length: 1353 bp
ATGGCGTGGTGTAGGCGGCAATGTTTTGCAGTGTTGGAAAGTTTTGCAACCAGAAAAGCAACGGTCGCGGCGGCTACGACAATGTTAGCAAGCAACTGGAAGAAGGAGAGGAACAAAATTAGCATGTTTTCAGAATTCATCAGAAGATATTCTTCTACTTTAGCACCACTTAAGGCCGAGGAGAAAAAGAAGAAAGAAATCATGGAAGAAAAAAGCTTTAAGTATAAGTCTCTCTACTTGTTTTTCGAGGAGGACACTGACGACAATGTTCATGTTATTCAATCCATCAGATTAAGCCATTTGTTGGGACCACCAGTACATGGGGGCGATGATATGAAATTACAGAGAGTTGCTTATAGATGTGGACCGAAAACGGTTGTTCCCGCTGATATGAGCACTGGTGTCGTCGGCTCCAAAATTATTTTCTCCGGTGGTAAGGTTGAACCTGAGGAAAAAGACACTACTTCTCATATTGAACAATATTCACTAAGTAAAGAAGTTAGTGTGTTTGAGACAGATCCAAGCATAGATCCAAATCCGAGATTGCAGCCCTCCCAAGTTTTCAAGATTAGTACACCTGAACCTGTTCTAGTAGAGGTGGACGACAAACTTTATCGTTTCGGTGGTCGATGTGACTGCACCAAAATCCTACTATGGGGCAAAAATCAGACCGGAGTGTACATGTTTGACGCGACCCATCCGGAAAAAGGATGGATAGAATTGGACCCTTGTTTGGGAAGCTATATTCCCTCTATTGATGGTTATGATCAACTATTTGTCAAGTTGAAGTTTCGTCATGGTGATGGTGAGGGTTTCTTAATGTTCTCCATTAATTTGGAACAACCTCATACAGTACTAGCCTTCCACATGTCTTATACATGTGATTCCTTAAAACTCATGGAACCTCTGCGGCTGCCAGAATGGCCTCCAAAATTTCATAGTCCAGATCGATGTCTGTTTTTTCACCTCGGAGGGCAAAAAGTTGGCCTTGTTTTCTCCCGTGATGCATTACGTGAGCATATATTACGTGATTACTATTATGATCATTATGATTTCCCTTCTGATTATGATGACGATGATAATGAAGACAACGAAGATGATGATAAAGACAACAAAGACGATGGCGATAATAATGATAATCACAACGCCTCTGACAATGTTAATTATGATGGCCTTGAGGATAGTGACAAGGTGAGAGTTCTTGTCATAATCTTTGAATACGAAATTACTGAGGAATCCATGGACATCAAATACAAGTTGCTTGGTACTCGCTGCCTTGAATACTCTTCCAAGAATCTTGAAGAAGAATCTCGGACTGATACCTCACAACTTATAGGTGCCTATGTGATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

450

Amino Acids

51.76

Weight (kDa)

5.0

Isoelectric Point (pI)

47.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1337
AccB7I CCANNNNNTGG 2 cut(s) 304, 320
AccII CGCG 2 cut(s) 68, 692
AccIII TCCGGA 1 cut(s) 700
AciI CCGC 5 cut(s) 16, 68, 71, 384, 910
AclWI GGATC 2 cut(s) 512, 524
AcsI RAATTY 2 cut(s) 134, 932
AfaI GTAC 5 cut(s) 318, 574, 680, 855, 1267
AfiI CCNNNNNNNGG 6 cut(s) 304, 320, 655, 707, 733, 734
AflII CTTAAG 1 cut(s) 170
AflIII ACRYGT 3 cut(s) 681, 867, 878
AgsI TTSAA 8 cut(s) 281, 443, 476, 565, 787, 1217, 1280, 1301
AjuI GAANNNNNNNTTGG 2 cut(s) 407, 439
AluBI AGCT 2 cut(s) 216, 741
AluI AGCT 2 cut(s) 216, 741
Alw21I GWGCWC 1 cut(s) 398
Alw26I GTCTC 2 cut(s) 234, 506
AlwI GGATC 2 cut(s) 512, 524
Aor13HI TCCGGA 1 cut(s) 700
AoxI GGCC 4 cut(s) 174, 923, 985, 1171
ApeKI GCWGC 3 cut(s) 547, 913, 1272
ApoI RAATTY 2 cut(s) 134, 932
AseI ATTAAT 1 cut(s) 831
Asp700I GAANNNNTTC 2 cut(s) 148, 585
AspS9I GGNCC 3 cut(s) 308, 365, 724
AsuHPI GGTGA 4 cut(s) 812, 818, 956, 1204
AvaII GGWCC 3 cut(s) 308, 365, 724
AxyI CCTNAGG 1 cut(s) 447
BanI GGYRCC 1 cut(s) 1337
BbsI GAAGAC 1 cut(s) 1092
Bbv12I GWGCWC 1 cut(s) 398
BbvI GCAGC 3 cut(s) 559, 900, 1259
BccI CCATC 7 cut(s) 293, 705, 705, 752, 797, 1115, 1163
BcgI CGANNNNNNTGC 4 cut(s) 385, 419, 618, 652
BclI TGATCA 2 cut(s) 766, 1042
BcoDI GTCTC 2 cut(s) 234, 506
BfaI CTAG 2 cut(s) 590, 857
BfrI CTTAAG 1 cut(s) 170
BglI GCCNNNNNGGC 1 cut(s) 922
BisI GCNGC 7 cut(s) 17, 69, 72, 548, 911, 914, 1273
BlsI GCNGC 7 cut(s) 18, 70, 73, 549, 912, 915, 1274
BmcAI AGTACT 1 cut(s) 855
Bme18I GGWCC 3 cut(s) 308, 365, 724
BmgT120I GGNCC 3 cut(s) 308, 365, 724
BmiI GGNNCC 5 cut(s) 309, 412, 726, 903, 1339
BmsI GCATC 1 cut(s) 994
BpiI GAAGAC 1 cut(s) 1092
BpuEI CTTGAG 1 cut(s) 1196
Bsa29I ATCGAT 1 cut(s) 949
BsaAI YACGTR 2 cut(s) 1013, 1028
BsaBI GATNNNNATC 1 cut(s) 534
BsaJI CCNNGG 3 cut(s) 177, 967, 1239
BsaWI WCCGGW 3 cut(s) 428, 671, 700
Bsc4I CCNNNNNNNGG 6 cut(s) 304, 320, 655, 707, 733, 734
Bse1I ACTGG 3 cut(s) 101, 314, 403
Bse21I CCTNAGG 1 cut(s) 447
Bse3DI GCAATG 1 cut(s) 26
Bse8I GATNNNNATC 1 cut(s) 534
BseAI TCCGGA 1 cut(s) 700
BseCI ATCGAT 1 cut(s) 949
BseDI CCNNGG 3 cut(s) 177, 967, 1239
BseGI GGATG 2 cut(s) 697, 716
BseJI GATNNNNATC 1 cut(s) 534
BseLI CCNNNNNNNGG 6 cut(s) 304, 320, 655, 707, 733, 734
BseMI GCAATG 1 cut(s) 26
BseMII CTCAG 2 cut(s) 438, 1221
BseNI ACTGG 3 cut(s) 101, 314, 403
BseRI GAGGAG 2 cut(s) 194, 263
BseXI GCAGC 3 cut(s) 559, 900, 1259
BsgI GTGCAG 1 cut(s) 622
Bsh1236I CGCG 2 cut(s) 68, 692
Bsh1285I CGRYCG 1 cut(s) 66
BshFI GGCC 4 cut(s) 176, 925, 987, 1173
BshNI GGYRCC 1 cut(s) 1337
BshVI ATCGAT 1 cut(s) 949
BsiEI CGRYCG 1 cut(s) 66
BsiHKAI GWGCWC 1 cut(s) 398
BsiSI CCGG 3 cut(s) 429, 672, 701
BslFI GGGAC 1 cut(s) 321
BslI CCNNNNNNNGG 6 cut(s) 304, 320, 655, 707, 733, 734
BsmAI GTCTC 2 cut(s) 234, 506
BsmFI GGGAC 1 cut(s) 321
BsnI GGCC 4 cut(s) 176, 925, 987, 1173
Bsp1286I GDGCHC 1 cut(s) 398
Bsp13I TCCGGA 1 cut(s) 700
Bsp1407I TGTACA 1 cut(s) 678
Bsp143I GATC 5 cut(s) 517, 529, 766, 946, 1042
Bsp19I CCATGG 1 cut(s) 1239
BspACI CCGC 5 cut(s) 16, 68, 71, 384, 910
BspANI GGCC 4 cut(s) 176, 925, 987, 1173
BspCNI CTCAG 2 cut(s) 439, 1222
BspDI ATCGAT 1 cut(s) 949
BspEI TCCGGA 1 cut(s) 700
BspFNI CGCG 2 cut(s) 68, 692
BspLI GGNNCC 5 cut(s) 309, 412, 726, 903, 1339
BspPI GGATC 2 cut(s) 512, 524
BspT107I GGYRCC 1 cut(s) 1337
BspTI CTTAAG 1 cut(s) 170
BsrDI GCAATG 1 cut(s) 26
BsrGI TGTACA 1 cut(s) 678
BsrI ACTGG 3 cut(s) 101, 314, 403
BssECI CCNNGG 3 cut(s) 177, 967, 1239
BssMI GATC 5 cut(s) 517, 529, 766, 946, 1042
BssT1I CCWWGG 1 cut(s) 1239
Bst4CI ACNGT 3 cut(s) 64, 376, 853
Bst6I CTCTTC 1 cut(s) 1291
BstAFI CTTAAG 1 cut(s) 170
BstAUI TGTACA 1 cut(s) 678
BstBAI YACGTR 2 cut(s) 1013, 1028
BstC8I GCNNGC 1 cut(s) 91
BstDEI CTNAG 3 cut(s) 447, 488, 1230
BstDSI CCRYGG 1 cut(s) 1239
BstF5I GGATG 2 cut(s) 697, 716
BstFNI CGCG 2 cut(s) 68, 692
BstKTI GATC 5 cut(s) 520, 532, 769, 949, 1045
BstMAI GTCTC 2 cut(s) 234, 506
BstMBI GATC 5 cut(s) 517, 529, 766, 946, 1042
BstMCI CGRYCG 1 cut(s) 66
BstMWI GCNNNNNNNGC 2 cut(s) 65, 922
BstNSI RCATGY 4 cut(s) 127, 685, 871, 882
BstUI CGCG 2 cut(s) 68, 692
BstV1I GCAGC 3 cut(s) 559, 900, 1259
BstV2I GAAGAC 1 cut(s) 1092
BstX2I RGATCY 2 cut(s) 517, 529
BstXI CCANNNNNNTGG 1 cut(s) 835
BstYI RGATCY 2 cut(s) 517, 529
Bsu15I ATCGAT 1 cut(s) 949
Bsu36I CCTNAGG 1 cut(s) 447
BsuRI GGCC 4 cut(s) 176, 925, 987, 1173
BsuTUI ATCGAT 1 cut(s) 949
BtgI CCRYGG 1 cut(s) 1239
BtgZI GCGATG 1 cut(s) 342
BtsCI GGATG 2 cut(s) 697, 716
BtsI GCAGTG 1 cut(s) 36
BtsIMutI CAGTG 3 cut(s) 36, 255, 396
Cac8I GCNNGC 1 cut(s) 91
Cfr13I GGNCC 3 cut(s) 308, 365, 724
ClaI ATCGAT 1 cut(s) 949
CseI GACGC 1 cut(s) 698
Csp6I GTAC 5 cut(s) 317, 573, 679, 854, 1266
CviQI GTAC 5 cut(s) 317, 573, 679, 854, 1266
DdeI CTNAG 3 cut(s) 447, 488, 1230
DpnI GATC 5 cut(s) 519, 531, 768, 948, 1044
DpnII GATC 5 cut(s) 517, 529, 766, 946, 1042
Eam1104I CTCTTC 1 cut(s) 1291
EarI CTCTTC 1 cut(s) 1291
Eco130I CCWWGG 1 cut(s) 1239
Eco47I GGWCC 3 cut(s) 308, 365, 724
Eco81I CCTNAGG 1 cut(s) 447
EcoRI GAATTC 1 cut(s) 134
EcoT14I CCWWGG 1 cut(s) 1239
EcoT22I ATGCAT 1 cut(s) 1009
ErhI CCWWGG 1 cut(s) 1239
FalI AAGNNNNNCTT 4 cut(s) 136, 168, 972, 1004
FaqI GGGAC 1 cut(s) 321
FauI CCCGC 1 cut(s) 391
FbaI TGATCA 2 cut(s) 766, 1042
Fnu4HI GCNGC 7 cut(s) 17, 69, 72, 548, 911, 914, 1273
FokI GGATG 2 cut(s) 684, 723
Fsp4HI GCNGC 7 cut(s) 17, 69, 72, 548, 911, 914, 1273
FspBI CTAG 2 cut(s) 590, 857
GluI GCNGC 7 cut(s) 17, 69, 72, 548, 911, 914, 1273
HaeIII GGCC 4 cut(s) 176, 925, 987, 1173
HapII CCGG 3 cut(s) 429, 672, 701
HgaI GACGC 1 cut(s) 698
HindIII AAGCTT 1 cut(s) 214
HinfI GANTC 4 cut(s) 884, 1235, 1294, 1307
HpaII CCGG 3 cut(s) 429, 672, 701
HphI GGTGA 4 cut(s) 812, 818, 956, 1204
Hpy166II GTNNAC 4 cut(s) 365, 575, 601, 679
Hpy188I TCNGA 9 cut(s) 133, 143, 290, 540, 669, 971, 1063, 1153, 1314
Hpy188III TCNNGA 4 cut(s) 565, 701, 944, 1298
Hpy8I GTNNAC 4 cut(s) 365, 575, 601, 679
Hpy99I CGWCG 1 cut(s) 410
HpyAV CCTTC 3 cut(s) 97, 871, 1068
HpyCH4III ACNGT 3 cut(s) 64, 376, 853
HpyCH4IV ACGT 2 cut(s) 1012, 1027
HpyCH4V TGCA 5 cut(s) 29, 47, 547, 639, 1007
HpyF10VI GCNNNNNNNGC 2 cut(s) 65, 922
HpyF3I CTNAG 3 cut(s) 447, 488, 1230
HpySE526I ACGT 2 cut(s) 1012, 1027
Kpn2I TCCGGA 1 cut(s) 700
Ksp22I TGATCA 2 cut(s) 766, 1042
Kzo9I GATC 5 cut(s) 517, 529, 766, 946, 1042
LmnI GCTCC 1 cut(s) 416
Lsp1109I GCAGC 3 cut(s) 559, 900, 1259
LweI GCATC 1 cut(s) 994
MaeI CTAG 2 cut(s) 590, 857
MaeII ACGT 2 cut(s) 1012, 1027
MaeIII GTNAC 2 cut(s) 632, 1184
MalI GATC 5 cut(s) 519, 531, 768, 948, 1044
MboI GATC 5 cut(s) 517, 529, 766, 946, 1042
MflI RGATCY 2 cut(s) 517, 529
MhlI GDGCHC 1 cut(s) 398
MluCI AATT 9 cut(s) 117, 134, 338, 417, 719, 832, 932, 1162, 1224
MmeI TCCRAC 1 cut(s) 15
Mph1103I ATGCAT 1 cut(s) 1009
MroI TCCGGA 1 cut(s) 700
MroXI GAANNNNTTC 2 cut(s) 148, 585
MseI TTAA 7 cut(s) 171, 219, 293, 818, 831, 890, 1161
MslI CAYNNNNRTG 1 cut(s) 801
MspA1I CMGCKG 1 cut(s) 386
MspCI CTTAAG 1 cut(s) 170
MspI CCGG 3 cut(s) 429, 672, 701
MvnI CGCG 2 cut(s) 68, 692
MwoI GCNNNNNNNGC 2 cut(s) 65, 922
NcoI CCATGG 1 cut(s) 1239
NdeII GATC 5 cut(s) 517, 529, 766, 946, 1042
NlaIV GGNNCC 5 cut(s) 309, 412, 726, 903, 1339
NmeAIII GCCGAG 1 cut(s) 202
NmuCI GTSAC 2 cut(s) 632, 1184
NsiI ATGCAT 1 cut(s) 1009
NspI RCATGY 4 cut(s) 127, 685, 871, 882
PciI ACATGT 3 cut(s) 681, 867, 878
PdmI GAANNNNTTC 2 cut(s) 148, 585
PfeI GAWTC 4 cut(s) 884, 1235, 1294, 1307
PflMI CCANNNNNTGG 2 cut(s) 304, 320
PkrI GCNGC 7 cut(s) 18, 70, 73, 549, 912, 915, 1274
Ppu21I YACGTR 2 cut(s) 1013, 1028
PscI ACATGT 3 cut(s) 681, 867, 878
PshBI ATTAAT 1 cut(s) 831
PspN4I GGNNCC 5 cut(s) 309, 412, 726, 903, 1339
PspPI GGNCC 3 cut(s) 308, 365, 724
PsuI RGATCY 2 cut(s) 517, 529
RsaI GTAC 5 cut(s) 318, 574, 680, 855, 1267
RsaNI GTAC 5 cut(s) 317, 573, 679, 854, 1266
RseI CAYNNNNRTG 1 cut(s) 801
SaqAI TTAA 7 cut(s) 171, 219, 293, 818, 831, 890, 1161
SatI GCNGC 7 cut(s) 17, 69, 72, 548, 911, 914, 1273
Sau3AI GATC 5 cut(s) 517, 529, 766, 946, 1042
Sau96I GGNCC 3 cut(s) 308, 365, 724
ScaI AGTACT 1 cut(s) 855
SduI GDGCHC 1 cut(s) 398
SfaNI GCATC 1 cut(s) 994
SinI GGWCC 3 cut(s) 308, 365, 724
SmiMI CAYNNNNRTG 1 cut(s) 801
SmlI CTYRAG 2 cut(s) 170, 1175
SmoI CTYRAG 2 cut(s) 170, 1175
Sse9I AATT 9 cut(s) 117, 134, 338, 417, 719, 832, 932, 1162, 1224
SsiI CCGC 5 cut(s) 16, 68, 71, 384, 910
SspI AATATT 1 cut(s) 482
SspMI CTAG 2 cut(s) 590, 857
StyI CCWWGG 1 cut(s) 1239
TaaI ACNGT 3 cut(s) 64, 376, 853
TaiI ACGT 2 cut(s) 1015, 1030
TaqI TCGA 3 cut(s) 246, 628, 949
TaqII GACCGA 1 cut(s) 382
TasI AATT 9 cut(s) 117, 134, 338, 417, 719, 832, 932, 1162, 1224
TatI WGTACW 4 cut(s) 316, 572, 678, 853
TauI GCSGC 4 cut(s) 19, 71, 74, 913
TfiI GAWTC 4 cut(s) 884, 1235, 1294, 1307
Tru1I TTAA 7 cut(s) 171, 219, 293, 818, 831, 890, 1161
Tru9I TTAA 7 cut(s) 171, 219, 293, 818, 831, 890, 1161
TscAI CASTG 3 cut(s) 36, 262, 403
TseFI GTSAC 2 cut(s) 632, 1184
TseI GCWGC 3 cut(s) 547, 913, 1272
Tsp45I GTSAC 2 cut(s) 632, 1184
TspDTI ATGAA 5 cut(s) 127, 260, 350, 926, 1098
TspRI CASTG 3 cut(s) 36, 262, 403
Van91I CCANNNNNTGG 2 cut(s) 304, 320
Vha464I CTTAAG 1 cut(s) 170
VpaK11BI GGWCC 3 cut(s) 308, 365, 724
VspI ATTAAT 1 cut(s) 831
XapI RAATTY 2 cut(s) 134, 932
XceI RCATGY 4 cut(s) 127, 685, 871, 882
XmnI GAANNNNTTC 2 cut(s) 148, 585
XspI CTAG 2 cut(s) 590, 857
ZrmI AGTACT 1 cut(s) 855
Zsp2I ATGCAT 1 cut(s) 1009
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.