FvH4_6g50763

RNA binding

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
37740227 .. 37741750
1524 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g50763.t1

Sequence Viewer

Length: 1449 bp
ATGGCATGGTGTAAGCGGCATTGTCTTGCAATCTTGGAGGGTTTAGCAGCCAGAAAAGTAGTGACCGCGGTAGCAACGTCAACATTGGCAAGAAATTGGAAGAAGGAGACAAAGAATATTAGCATATTTTCAGAATTTATAAGAAAAAATTCTTCTACTCTAGCATCAAGTGCGGCAGAGGAGATAAAGAAGAAAGGAATCATGGAAGAAGAAAGCTTAAAGCACAATCATTTGCTAGAACCACCAGTACATGGCGGCGATGATCTGAAATTACAAAAAGTTGCTTCTAGATGTGGACCGGATACTGTTGTTCCCAAACCTGGAAGCACTGGTGTCATCGGCTCCAAAATTATTTTTCCTGGTGGTTTTGTTGTTGTTGAAATGGAGAAAAGTAACGATTATTCACTAAGTAAAGAAGTTTCTCTGTTTGAGACAGATCTAAGCATAGATCCAAATCCGAAATTACAGCCTTCGCAAGTTTTCAAGATCAGTAGAGCTGGACCTGTTTTAGTGGAGGTGGATAATAAACTGTATCGTTTCGATAGTCAGTGTGACTGTGAGTCATTCGAGGTATTTGACGCAACACAGGATGACTGGTTGCCTTTGGATGTGCCTCCTCGGAAGTATCCCTATGACTTCATTCATGCAATTGCAGGTACCAATATCTTACTCTGGGGGAGAAATCAGAACGGAGTGTACATGTTTGACGTGACCCACTCGAAAAAAGGATGGACACAATTAGACCCTTGTATGGGAAGGTACATTCAGTCTATCGATGGTTATGATCAACTATTTGTCAAGTTGAAATCCGGTCATGGTGATGGTGGGGGTTTTCTTATGTTCTCCATTAACTTGAAACAATCTCATACAGTACTAGTCTCCCACATGTCACAGACATGTGATTCATTGAACCCTTTGGAACCTCTGCAGCTACCAGCAGAGACAAAGAGGCCTCCAAAAATCAAGGGTGATCGATGTCGGTTTTTCCATCTAGGGGGTCAAAAAGTTGGCATTGTTTTCTCCAATGACTGTTTAAATGATTATGATAAGGCTAGTTATGTTGATTATTATGTATCTAGTTCTGATTACGACAACAATGGAGAGAAGGAAGATGGTGATGAAGAGAACAAAGACGATTGCCACAATAATGATGTATTTTTTTCTGATTACGACAGTGATGGAGAGAAGGAAGATGGCGATGAAGAGAACAAAGACGATTGCCACAATAATAATGAAAACGGTAGCTCTTGTAATGTTATTAATCAAGACCCTTATGATAGTGACAAGACGAGCGTTCTTGTCATAATCTTTGAATATAAATTTGTTGAGGAATCCATGGATATCATATACAAGTCGGTTACTTCTCATTGCCTTGAATACTCTGCCAAAGATCCAGAAGAAGAATCTCCAACCGAATTCTCAATCTTGATAGGTGCCCATGTGTTGTAA

Protein Analysis

483

Amino Acids

54.05

Weight (kDa)

4.89

Isoelectric Point (pI)

46.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 140
Acc36I ACCTGC 1 cut(s) 644
Acc65I GGTACC 1 cut(s) 656
AccB1I GGYRCC 2 cut(s) 656, 1433
AccB7I CCANNNNNTGG 1 cut(s) 251
AccII CGCG 1 cut(s) 68
AciI CCGC 5 cut(s) 16, 66, 68, 173, 255
AclWI GGATC 2 cut(s) 443, 1385
AcsI RAATTY 4 cut(s) 134, 148, 1319, 1415
AfaI GTAC 5 cut(s) 249, 658, 698, 761, 873
AfiI CCNNNNNNNGG 5 cut(s) 251, 320, 751, 752, 994
AflIII ACRYGT 3 cut(s) 699, 885, 896
AgsI TTSAA 7 cut(s) 380, 484, 805, 856, 910, 1313, 1376
AhdI GACNNNNNGTC 1 cut(s) 559
AhlI ACTAGT 1 cut(s) 874
AjiI CACGTC 1 cut(s) 709
AjnI CCWGG 2 cut(s) 319, 358
AluBI AGCT 4 cut(s) 216, 497, 931, 1245
AluI AGCT 4 cut(s) 216, 497, 931, 1245
Alw26I GTCTC 4 cut(s) 101, 425, 883, 935
AlwI GGATC 2 cut(s) 443, 1385
AoxI GGCC 1 cut(s) 950
ApeKI GCWGC 2 cut(s) 47, 928
ApoI RAATTY 4 cut(s) 134, 148, 1319, 1415
AseI ATTAAT 1 cut(s) 1260
Asp700I GAANNNNTTC 1 cut(s) 148
Asp718I GGTACC 1 cut(s) 656
AspS9I GGNCC 2 cut(s) 296, 500
AsuHPI GGTGA 3 cut(s) 830, 980, 1127
AvaII GGWCC 2 cut(s) 296, 500
BaeGI GKGCMC 1 cut(s) 1438
BaeI ACNNNNGTAYC 2 cut(s) 294, 327
BanI GGYRCC 2 cut(s) 656, 1433
BbvI GCAGC 2 cut(s) 59, 940
BccI CCATC 7 cut(s) 723, 770, 815, 996, 1106, 1172, 1187
BciT130I CCWGG 2 cut(s) 321, 360
BciVI GTATCC 2 cut(s) 295, 636
BclI TGATCA 1 cut(s) 784
BcoDI GTCTC 4 cut(s) 101, 425, 883, 935
BcuI ACTAGT 1 cut(s) 874
BfaI CTAG 7 cut(s) 161, 236, 288, 875, 992, 1053, 1077
BfmI CTRYAG 1 cut(s) 926
BfuAI ACCTGC 1 cut(s) 644
BfuI GTATCC 2 cut(s) 295, 636
BglII AGATCT 1 cut(s) 436
BisI GCNGC 5 cut(s) 17, 48, 174, 256, 929
BlsI GCNGC 5 cut(s) 18, 49, 175, 257, 930
BmcAI AGTACT 1 cut(s) 873
Bme1390I CCNGG 2 cut(s) 321, 360
Bme18I GGWCC 2 cut(s) 296, 500
BmeRI GACNNNNNGTC 1 cut(s) 559
BmgBI CACGTC 1 cut(s) 709
BmgT120I GGNCC 2 cut(s) 296, 500
BmiI GGNNCC 4 cut(s) 343, 658, 921, 1435
BmrFI CCNGG 2 cut(s) 321, 360
BmsI GCATC 1 cut(s) 173
Bsa29I ATCGAT 2 cut(s) 774, 973
BsaBI GATNNNNATC 1 cut(s) 453
BsaJI CCNNGG 3 cut(s) 66, 617, 1335
BsaWI WCCGGW 2 cut(s) 298, 809
Bsc4I CCNNNNNNNGG 5 cut(s) 251, 320, 751, 752, 994
Bse1I ACTGG 3 cut(s) 245, 334, 599
Bse3DI GCAATG 1 cut(s) 1366
Bse8I GATNNNNATC 1 cut(s) 453
BseBI CCWGG 2 cut(s) 321, 360
BseCI ATCGAT 2 cut(s) 774, 973
BseDI CCNNGG 3 cut(s) 66, 617, 1335
BseGI GGATG 3 cut(s) 595, 613, 734
BseJI GATNNNNATC 1 cut(s) 453
BseLI CCNNNNNNNGG 5 cut(s) 251, 320, 751, 752, 994
BseMI GCAATG 1 cut(s) 1366
BseNI ACTGG 3 cut(s) 245, 334, 599
BseRI GAGGAG 2 cut(s) 194, 606
BseSI GKGCMC 1 cut(s) 1438
BseXI GCAGC 2 cut(s) 59, 940
Bsh1236I CGCG 1 cut(s) 68
BshFI GGCC 1 cut(s) 952
BshNI GGYRCC 2 cut(s) 656, 1433
BshVI ATCGAT 2 cut(s) 774, 973
BsiSI CCGG 2 cut(s) 299, 810
BslI CCNNNNNNNGG 5 cut(s) 251, 320, 751, 752, 994
BsmAI GTCTC 4 cut(s) 101, 425, 883, 935
BsnI GGCC 1 cut(s) 952
Bsp1286I GDGCHC 1 cut(s) 1438
Bsp1407I TGTACA 1 cut(s) 696
Bsp143I GATC 7 cut(s) 262, 436, 448, 486, 784, 970, 1390
Bsp19I CCATGG 1 cut(s) 1335
BspACI CCGC 5 cut(s) 16, 66, 68, 173, 255
BspANI GGCC 1 cut(s) 952
BspDI ATCGAT 2 cut(s) 774, 973
BspFNI CGCG 1 cut(s) 68
BspLI GGNNCC 4 cut(s) 343, 658, 921, 1435
BspMAI CTGCAG 1 cut(s) 930
BspMI ACCTGC 1 cut(s) 644
BspPI GGATC 2 cut(s) 443, 1385
BspT107I GGYRCC 2 cut(s) 656, 1433
BsrDI GCAATG 1 cut(s) 1366
BsrGI TGTACA 1 cut(s) 696
BsrI ACTGG 3 cut(s) 245, 334, 599
BssECI CCNNGG 3 cut(s) 66, 617, 1335
BssMI GATC 7 cut(s) 262, 436, 448, 486, 784, 970, 1390
BssT1I CCWWGG 1 cut(s) 1335
Bst2UI CCWGG 2 cut(s) 321, 360
Bst4CI ACNGT 7 cut(s) 307, 531, 557, 871, 1031, 1175, 1241
Bst6I CTCTTC 2 cut(s) 1116, 1197
BstAPI GCANNNNNTGC 1 cut(s) 170
BstAUI TGTACA 1 cut(s) 696
BstDEI CTNAG 2 cut(s) 407, 440
BstDSI CCRYGG 2 cut(s) 66, 1335
BstF5I GGATG 3 cut(s) 595, 613, 734
BstFNI CGCG 1 cut(s) 68
BstKTI GATC 7 cut(s) 265, 439, 451, 489, 787, 973, 1393
BstMAI GTCTC 4 cut(s) 101, 425, 883, 935
BstMBI GATC 7 cut(s) 262, 436, 448, 486, 784, 970, 1390
BstMWI GCNNNNNNNGC 1 cut(s) 170
BstNI CCWGG 2 cut(s) 321, 360
BstNSI RCATGY 3 cut(s) 703, 889, 900
BstSCI CCNGG 2 cut(s) 319, 358
BstSFI CTRYAG 1 cut(s) 926
BstSLI GKGCMC 1 cut(s) 1438
BstUI CGCG 1 cut(s) 68
BstV1I GCAGC 2 cut(s) 59, 940
BstX2I RGATCY 3 cut(s) 436, 448, 1390
BstYI RGATCY 3 cut(s) 436, 448, 1390
Bsu15I ATCGAT 2 cut(s) 774, 973
BsuI GTATCC 2 cut(s) 295, 636
BsuRI GGCC 1 cut(s) 952
BsuTUI ATCGAT 2 cut(s) 774, 973
BtgI CCRYGG 2 cut(s) 66, 1335
BtgZI GCGATG 2 cut(s) 273, 1212
BtrI CACGTC 1 cut(s) 709
BtsCI GGATG 3 cut(s) 595, 613, 734
BtsIMutI CAGTG 3 cut(s) 327, 554, 1180
BveI ACCTGC 1 cut(s) 644
Cfr13I GGNCC 2 cut(s) 296, 500
Cfr42I CCGCGG 1 cut(s) 69
ClaI ATCGAT 2 cut(s) 774, 973
CseI GACGC 1 cut(s) 587
Csp6I GTAC 5 cut(s) 248, 657, 697, 760, 872
CviJI RGCY 9 cut(s) 50, 216, 342, 469, 497, 931, 952, 1052, 1245
CviKI_1 RGCY 9 cut(s) 50, 216, 342, 469, 497, 931, 952, 1052, 1245
CviQI GTAC 5 cut(s) 248, 657, 697, 760, 872
DdeI CTNAG 2 cut(s) 407, 440
DpnI GATC 7 cut(s) 264, 438, 450, 488, 786, 972, 1392
DpnII GATC 7 cut(s) 262, 436, 448, 486, 784, 970, 1390
DraI TTTAAA 1 cut(s) 1035
DriI GACNNNNNGTC 1 cut(s) 559
Eam1104I CTCTTC 2 cut(s) 1116, 1197
Eam1105I GACNNNNNGTC 1 cut(s) 559
EarI CTCTTC 2 cut(s) 1116, 1197
Eco130I CCWWGG 1 cut(s) 1335
Eco147I AGGCCT 1 cut(s) 952
Eco32I GATATC 1 cut(s) 1342
Eco47I GGWCC 2 cut(s) 296, 500
EcoRI GAATTC 1 cut(s) 1415
EcoRII CCWGG 2 cut(s) 319, 358
EcoRV GATATC 1 cut(s) 1342
EcoT14I CCWWGG 1 cut(s) 1335
ErhI CCWWGG 1 cut(s) 1335
FbaI TGATCA 1 cut(s) 784
Fnu4HI GCNGC 5 cut(s) 17, 48, 174, 256, 929
FokI GGATG 3 cut(s) 602, 620, 741
Fsp4HI GCNGC 5 cut(s) 17, 48, 174, 256, 929
FspBI CTAG 7 cut(s) 161, 236, 288, 875, 992, 1053, 1077
GluI GCNGC 5 cut(s) 17, 48, 174, 256, 929
HaeIII GGCC 1 cut(s) 952
HapII CCGG 2 cut(s) 299, 810
HgaI GACGC 1 cut(s) 587
HincII GTYRAC 1 cut(s) 81
HindII GTYRAC 1 cut(s) 81
HindIII AAGCTT 1 cut(s) 214
HinfI GANTC 5 cut(s) 198, 560, 902, 1331, 1403
HpaII CCGG 2 cut(s) 299, 810
HphI GGTGA 3 cut(s) 830, 980, 1127
Hpy166II GTNNAC 3 cut(s) 81, 296, 697
Hpy188I TCNGA 7 cut(s) 133, 267, 459, 621, 687, 1084, 1165
Hpy188III TCNNGA 5 cut(s) 288, 484, 1265, 1394, 1426
Hpy8I GTNNAC 3 cut(s) 81, 296, 697
HpyAV CCTTC 5 cut(s) 97, 480, 750, 1099, 1180
HpyCH4III ACNGT 7 cut(s) 307, 531, 557, 871, 1031, 1175, 1241
HpyCH4IV ACGT 2 cut(s) 77, 708
HpyCH4V TGCA 4 cut(s) 29, 647, 653, 928
HpyF10VI GCNNNNNNNGC 1 cut(s) 170
HpyF3I CTNAG 2 cut(s) 407, 440
HpySE526I ACGT 2 cut(s) 77, 708
KpnI GGTACC 1 cut(s) 660
Ksp22I TGATCA 1 cut(s) 784
KspI CCGCGG 1 cut(s) 69
Kzo9I GATC 7 cut(s) 262, 436, 448, 486, 784, 970, 1390
LmnI GCTCC 1 cut(s) 347
Lsp1109I GCAGC 2 cut(s) 59, 940
LweI GCATC 1 cut(s) 173
MaeI CTAG 7 cut(s) 161, 236, 288, 875, 992, 1053, 1077
MaeII ACGT 2 cut(s) 77, 708
MaeIII GTNAC 7 cut(s) 61, 392, 551, 709, 888, 1280, 1357
MalI GATC 7 cut(s) 264, 438, 450, 488, 786, 972, 1392
MboI GATC 7 cut(s) 262, 436, 448, 486, 784, 970, 1390
MfeI CAATTG 1 cut(s) 648
MflI RGATCY 3 cut(s) 436, 448, 1390
MhlI GDGCHC 1 cut(s) 1438
MlyI GAGTC 1 cut(s) 569
MmeI TCCRAC 1 cut(s) 1433
MroXI GAANNNNTTC 1 cut(s) 148
MseI TTAA 4 cut(s) 218, 849, 1034, 1260
MslI CAYNNNNRTG 3 cut(s) 819, 895, 1146
MspA1I CMGCKG 1 cut(s) 68
MspI CCGG 2 cut(s) 299, 810
MspR9I CCNGG 2 cut(s) 321, 360
MunI CAATTG 1 cut(s) 648
MvaI CCWGG 2 cut(s) 321, 360
MvnI CGCG 1 cut(s) 68
MwoI GCNNNNNNNGC 1 cut(s) 170
NcoI CCATGG 1 cut(s) 1335
NdeII GATC 7 cut(s) 262, 436, 448, 486, 784, 970, 1390
NlaIV GGNNCC 4 cut(s) 343, 658, 921, 1435
NmuCI GTSAC 5 cut(s) 61, 551, 709, 888, 1280
NspI RCATGY 3 cut(s) 703, 889, 900
PceI AGGCCT 1 cut(s) 952
PciI ACATGT 3 cut(s) 699, 885, 896
PdmI GAANNNNTTC 1 cut(s) 148
PfeI GAWTC 4 cut(s) 198, 902, 1331, 1403
PflMI CCANNNNNTGG 1 cut(s) 251
PkrI GCNGC 5 cut(s) 18, 49, 175, 257, 930
PleI GAGTC 1 cut(s) 568
PpsI GAGTC 1 cut(s) 568
PscI ACATGT 3 cut(s) 699, 885, 896
PshBI ATTAAT 1 cut(s) 1260
PsiI TTATAA 1 cut(s) 140
Psp6I CCWGG 2 cut(s) 319, 358
PspGI CCWGG 2 cut(s) 319, 358
PspN4I GGNNCC 4 cut(s) 343, 658, 921, 1435
PspPI GGNCC 2 cut(s) 296, 500
PsrI GAACNNNNNNTAC 4 cut(s) 231, 263, 680, 712
PstI CTGCAG 1 cut(s) 930
PsuI RGATCY 3 cut(s) 436, 448, 1390
RsaI GTAC 5 cut(s) 249, 658, 698, 761, 873
RsaNI GTAC 5 cut(s) 248, 657, 697, 760, 872
RseI CAYNNNNRTG 3 cut(s) 819, 895, 1146
SacII CCGCGG 1 cut(s) 69
SaqAI TTAA 4 cut(s) 218, 849, 1034, 1260
SatI GCNGC 5 cut(s) 17, 48, 174, 256, 929
Sau3AI GATC 7 cut(s) 262, 436, 448, 486, 784, 970, 1390
Sau96I GGNCC 2 cut(s) 296, 500
ScaI AGTACT 1 cut(s) 873
SchI GAGTC 1 cut(s) 569
ScrFI CCNGG 2 cut(s) 321, 360
SduI GDGCHC 1 cut(s) 1438
SfaNI GCATC 1 cut(s) 173
SfcI CTRYAG 1 cut(s) 926
Sfr303I CCGCGG 1 cut(s) 69
SgrBI CCGCGG 1 cut(s) 69
SinI GGWCC 2 cut(s) 296, 500
SmiMI CAYNNNNRTG 3 cut(s) 819, 895, 1146
SpeI ACTAGT 1 cut(s) 874
SseBI AGGCCT 1 cut(s) 952
SsiI CCGC 5 cut(s) 16, 66, 68, 173, 255
SspI AATATT 1 cut(s) 118
SspMI CTAG 7 cut(s) 161, 236, 288, 875, 992, 1053, 1077
StuI AGGCCT 1 cut(s) 952
StyD4I CCNGG 2 cut(s) 319, 358
StyI CCWWGG 1 cut(s) 1335
TaaI ACNGT 7 cut(s) 307, 531, 557, 871, 1031, 1175, 1241
TaiI ACGT 2 cut(s) 80, 711
TaqI TCGA 5 cut(s) 540, 567, 719, 774, 973
TatI WGTACW 3 cut(s) 247, 696, 871
TauI GCSGC 3 cut(s) 19, 176, 258
TfiI GAWTC 4 cut(s) 198, 902, 1331, 1403
Tru1I TTAA 4 cut(s) 218, 849, 1034, 1260
Tru9I TTAA 4 cut(s) 218, 849, 1034, 1260
TscAI CASTG 3 cut(s) 334, 554, 1180
TseFI GTSAC 5 cut(s) 61, 551, 709, 888, 1280
TseI GCWGC 2 cut(s) 47, 928
Tsp45I GTSAC 5 cut(s) 61, 551, 709, 888, 1280
TspDTI ATGAA 6 cut(s) 628, 632, 894, 1134, 1215, 1248
TspGWI ACGGA 1 cut(s) 705
TspRI CASTG 3 cut(s) 334, 554, 1180
Van91I CCANNNNNTGG 1 cut(s) 251
VpaK11BI GGWCC 2 cut(s) 296, 500
VspI ATTAAT 1 cut(s) 1260
XapI RAATTY 4 cut(s) 134, 148, 1319, 1415
XbaI TCTAGA 1 cut(s) 287
XceI RCATGY 3 cut(s) 703, 889, 900
XmnI GAANNNNTTC 1 cut(s) 148
XspI CTAG 7 cut(s) 161, 236, 288, 875, 992, 1053, 1077
ZrmI AGTACT 1 cut(s) 873
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.