RNA binding
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 140 |
| Acc36I | ACCTGC | 1 cut(s) | 644 |
| Acc65I | GGTACC | 1 cut(s) | 656 |
| AccB1I | GGYRCC | 2 cut(s) | 656, 1433 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 251 |
| AccII | CGCG | 1 cut(s) | 68 |
| AciI | CCGC | 5 cut(s) | 16, 66, 68, 173, 255 |
| AclWI | GGATC | 2 cut(s) | 443, 1385 |
| AcsI | RAATTY | 4 cut(s) | 134, 148, 1319, 1415 |
| AfaI | GTAC | 5 cut(s) | 249, 658, 698, 761, 873 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 251, 320, 751, 752, 994 |
| AflIII | ACRYGT | 3 cut(s) | 699, 885, 896 |
| AgsI | TTSAA | 7 cut(s) | 380, 484, 805, 856, 910, 1313, 1376 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 559 |
| AhlI | ACTAGT | 1 cut(s) | 874 |
| AjiI | CACGTC | 1 cut(s) | 709 |
| AjnI | CCWGG | 2 cut(s) | 319, 358 |
| AluBI | AGCT | 4 cut(s) | 216, 497, 931, 1245 |
| AluI | AGCT | 4 cut(s) | 216, 497, 931, 1245 |
| Alw26I | GTCTC | 4 cut(s) | 101, 425, 883, 935 |
| AlwI | GGATC | 2 cut(s) | 443, 1385 |
| AoxI | GGCC | 1 cut(s) | 950 |
| ApeKI | GCWGC | 2 cut(s) | 47, 928 |
| ApoI | RAATTY | 4 cut(s) | 134, 148, 1319, 1415 |
| AseI | ATTAAT | 1 cut(s) | 1260 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 148 |
| Asp718I | GGTACC | 1 cut(s) | 656 |
| AspS9I | GGNCC | 2 cut(s) | 296, 500 |
| AsuHPI | GGTGA | 3 cut(s) | 830, 980, 1127 |
| AvaII | GGWCC | 2 cut(s) | 296, 500 |
| BaeGI | GKGCMC | 1 cut(s) | 1438 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 294, 327 |
| BanI | GGYRCC | 2 cut(s) | 656, 1433 |
| BbvI | GCAGC | 2 cut(s) | 59, 940 |
| BccI | CCATC | 7 cut(s) | 723, 770, 815, 996, 1106, 1172, 1187 |
| BciT130I | CCWGG | 2 cut(s) | 321, 360 |
| BciVI | GTATCC | 2 cut(s) | 295, 636 |
| BclI | TGATCA | 1 cut(s) | 784 |
| BcoDI | GTCTC | 4 cut(s) | 101, 425, 883, 935 |
| BcuI | ACTAGT | 1 cut(s) | 874 |
| BfaI | CTAG | 7 cut(s) | 161, 236, 288, 875, 992, 1053, 1077 |
| BfmI | CTRYAG | 1 cut(s) | 926 |
| BfuAI | ACCTGC | 1 cut(s) | 644 |
| BfuI | GTATCC | 2 cut(s) | 295, 636 |
| BglII | AGATCT | 1 cut(s) | 436 |
| BisI | GCNGC | 5 cut(s) | 17, 48, 174, 256, 929 |
| BlsI | GCNGC | 5 cut(s) | 18, 49, 175, 257, 930 |
| BmcAI | AGTACT | 1 cut(s) | 873 |
| Bme1390I | CCNGG | 2 cut(s) | 321, 360 |
| Bme18I | GGWCC | 2 cut(s) | 296, 500 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 559 |
| BmgBI | CACGTC | 1 cut(s) | 709 |
| BmgT120I | GGNCC | 2 cut(s) | 296, 500 |
| BmiI | GGNNCC | 4 cut(s) | 343, 658, 921, 1435 |
| BmrFI | CCNGG | 2 cut(s) | 321, 360 |
| BmsI | GCATC | 1 cut(s) | 173 |
| Bsa29I | ATCGAT | 2 cut(s) | 774, 973 |
| BsaBI | GATNNNNATC | 1 cut(s) | 453 |
| BsaJI | CCNNGG | 3 cut(s) | 66, 617, 1335 |
| BsaWI | WCCGGW | 2 cut(s) | 298, 809 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 251, 320, 751, 752, 994 |
| Bse1I | ACTGG | 3 cut(s) | 245, 334, 599 |
| Bse3DI | GCAATG | 1 cut(s) | 1366 |
| Bse8I | GATNNNNATC | 1 cut(s) | 453 |
| BseBI | CCWGG | 2 cut(s) | 321, 360 |
| BseCI | ATCGAT | 2 cut(s) | 774, 973 |
| BseDI | CCNNGG | 3 cut(s) | 66, 617, 1335 |
| BseGI | GGATG | 3 cut(s) | 595, 613, 734 |
| BseJI | GATNNNNATC | 1 cut(s) | 453 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 251, 320, 751, 752, 994 |
| BseMI | GCAATG | 1 cut(s) | 1366 |
| BseNI | ACTGG | 3 cut(s) | 245, 334, 599 |
| BseRI | GAGGAG | 2 cut(s) | 194, 606 |
| BseSI | GKGCMC | 1 cut(s) | 1438 |
| BseXI | GCAGC | 2 cut(s) | 59, 940 |
| Bsh1236I | CGCG | 1 cut(s) | 68 |
| BshFI | GGCC | 1 cut(s) | 952 |
| BshNI | GGYRCC | 2 cut(s) | 656, 1433 |
| BshVI | ATCGAT | 2 cut(s) | 774, 973 |
| BsiSI | CCGG | 2 cut(s) | 299, 810 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 251, 320, 751, 752, 994 |
| BsmAI | GTCTC | 4 cut(s) | 101, 425, 883, 935 |
| BsnI | GGCC | 1 cut(s) | 952 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1438 |
| Bsp1407I | TGTACA | 1 cut(s) | 696 |
| Bsp143I | GATC | 7 cut(s) | 262, 436, 448, 486, 784, 970, 1390 |
| Bsp19I | CCATGG | 1 cut(s) | 1335 |
| BspACI | CCGC | 5 cut(s) | 16, 66, 68, 173, 255 |
| BspANI | GGCC | 1 cut(s) | 952 |
| BspDI | ATCGAT | 2 cut(s) | 774, 973 |
| BspFNI | CGCG | 1 cut(s) | 68 |
| BspLI | GGNNCC | 4 cut(s) | 343, 658, 921, 1435 |
| BspMAI | CTGCAG | 1 cut(s) | 930 |
| BspMI | ACCTGC | 1 cut(s) | 644 |
| BspPI | GGATC | 2 cut(s) | 443, 1385 |
| BspT107I | GGYRCC | 2 cut(s) | 656, 1433 |
| BsrDI | GCAATG | 1 cut(s) | 1366 |
| BsrGI | TGTACA | 1 cut(s) | 696 |
| BsrI | ACTGG | 3 cut(s) | 245, 334, 599 |
| BssECI | CCNNGG | 3 cut(s) | 66, 617, 1335 |
| BssMI | GATC | 7 cut(s) | 262, 436, 448, 486, 784, 970, 1390 |
| BssT1I | CCWWGG | 1 cut(s) | 1335 |
| Bst2UI | CCWGG | 2 cut(s) | 321, 360 |
| Bst4CI | ACNGT | 7 cut(s) | 307, 531, 557, 871, 1031, 1175, 1241 |
| Bst6I | CTCTTC | 2 cut(s) | 1116, 1197 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 170 |
| BstAUI | TGTACA | 1 cut(s) | 696 |
| BstDEI | CTNAG | 2 cut(s) | 407, 440 |
| BstDSI | CCRYGG | 2 cut(s) | 66, 1335 |
| BstF5I | GGATG | 3 cut(s) | 595, 613, 734 |
| BstFNI | CGCG | 1 cut(s) | 68 |
| BstKTI | GATC | 7 cut(s) | 265, 439, 451, 489, 787, 973, 1393 |
| BstMAI | GTCTC | 4 cut(s) | 101, 425, 883, 935 |
| BstMBI | GATC | 7 cut(s) | 262, 436, 448, 486, 784, 970, 1390 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 170 |
| BstNI | CCWGG | 2 cut(s) | 321, 360 |
| BstNSI | RCATGY | 3 cut(s) | 703, 889, 900 |
| BstSCI | CCNGG | 2 cut(s) | 319, 358 |
| BstSFI | CTRYAG | 1 cut(s) | 926 |
| BstSLI | GKGCMC | 1 cut(s) | 1438 |
| BstUI | CGCG | 1 cut(s) | 68 |
| BstV1I | GCAGC | 2 cut(s) | 59, 940 |
| BstX2I | RGATCY | 3 cut(s) | 436, 448, 1390 |
| BstYI | RGATCY | 3 cut(s) | 436, 448, 1390 |
| Bsu15I | ATCGAT | 2 cut(s) | 774, 973 |
| BsuI | GTATCC | 2 cut(s) | 295, 636 |
| BsuRI | GGCC | 1 cut(s) | 952 |
| BsuTUI | ATCGAT | 2 cut(s) | 774, 973 |
| BtgI | CCRYGG | 2 cut(s) | 66, 1335 |
| BtgZI | GCGATG | 2 cut(s) | 273, 1212 |
| BtrI | CACGTC | 1 cut(s) | 709 |
| BtsCI | GGATG | 3 cut(s) | 595, 613, 734 |
| BtsIMutI | CAGTG | 3 cut(s) | 327, 554, 1180 |
| BveI | ACCTGC | 1 cut(s) | 644 |
| Cfr13I | GGNCC | 2 cut(s) | 296, 500 |
| Cfr42I | CCGCGG | 1 cut(s) | 69 |
| ClaI | ATCGAT | 2 cut(s) | 774, 973 |
| CseI | GACGC | 1 cut(s) | 587 |
| Csp6I | GTAC | 5 cut(s) | 248, 657, 697, 760, 872 |
| CviJI | RGCY | 9 cut(s) | 50, 216, 342, 469, 497, 931, 952, 1052, 1245 |
| CviKI_1 | RGCY | 9 cut(s) | 50, 216, 342, 469, 497, 931, 952, 1052, 1245 |
| CviQI | GTAC | 5 cut(s) | 248, 657, 697, 760, 872 |
| DdeI | CTNAG | 2 cut(s) | 407, 440 |
| DpnI | GATC | 7 cut(s) | 264, 438, 450, 488, 786, 972, 1392 |
| DpnII | GATC | 7 cut(s) | 262, 436, 448, 486, 784, 970, 1390 |
| DraI | TTTAAA | 1 cut(s) | 1035 |
| DriI | GACNNNNNGTC | 1 cut(s) | 559 |
| Eam1104I | CTCTTC | 2 cut(s) | 1116, 1197 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 559 |
| EarI | CTCTTC | 2 cut(s) | 1116, 1197 |
| Eco130I | CCWWGG | 1 cut(s) | 1335 |
| Eco147I | AGGCCT | 1 cut(s) | 952 |
| Eco32I | GATATC | 1 cut(s) | 1342 |
| Eco47I | GGWCC | 2 cut(s) | 296, 500 |
| EcoRI | GAATTC | 1 cut(s) | 1415 |
| EcoRII | CCWGG | 2 cut(s) | 319, 358 |
| EcoRV | GATATC | 1 cut(s) | 1342 |
| EcoT14I | CCWWGG | 1 cut(s) | 1335 |
| ErhI | CCWWGG | 1 cut(s) | 1335 |
| FbaI | TGATCA | 1 cut(s) | 784 |
| Fnu4HI | GCNGC | 5 cut(s) | 17, 48, 174, 256, 929 |
| FokI | GGATG | 3 cut(s) | 602, 620, 741 |
| Fsp4HI | GCNGC | 5 cut(s) | 17, 48, 174, 256, 929 |
| FspBI | CTAG | 7 cut(s) | 161, 236, 288, 875, 992, 1053, 1077 |
| GluI | GCNGC | 5 cut(s) | 17, 48, 174, 256, 929 |
| HaeIII | GGCC | 1 cut(s) | 952 |
| HapII | CCGG | 2 cut(s) | 299, 810 |
| HgaI | GACGC | 1 cut(s) | 587 |
| HincII | GTYRAC | 1 cut(s) | 81 |
| HindII | GTYRAC | 1 cut(s) | 81 |
| HindIII | AAGCTT | 1 cut(s) | 214 |
| HinfI | GANTC | 5 cut(s) | 198, 560, 902, 1331, 1403 |
| HpaII | CCGG | 2 cut(s) | 299, 810 |
| HphI | GGTGA | 3 cut(s) | 830, 980, 1127 |
| Hpy166II | GTNNAC | 3 cut(s) | 81, 296, 697 |
| Hpy188I | TCNGA | 7 cut(s) | 133, 267, 459, 621, 687, 1084, 1165 |
| Hpy188III | TCNNGA | 5 cut(s) | 288, 484, 1265, 1394, 1426 |
| Hpy8I | GTNNAC | 3 cut(s) | 81, 296, 697 |
| HpyAV | CCTTC | 5 cut(s) | 97, 480, 750, 1099, 1180 |
| HpyCH4III | ACNGT | 7 cut(s) | 307, 531, 557, 871, 1031, 1175, 1241 |
| HpyCH4IV | ACGT | 2 cut(s) | 77, 708 |
| HpyCH4V | TGCA | 4 cut(s) | 29, 647, 653, 928 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 170 |
| HpyF3I | CTNAG | 2 cut(s) | 407, 440 |
| HpySE526I | ACGT | 2 cut(s) | 77, 708 |
| KpnI | GGTACC | 1 cut(s) | 660 |
| Ksp22I | TGATCA | 1 cut(s) | 784 |
| KspI | CCGCGG | 1 cut(s) | 69 |
| Kzo9I | GATC | 7 cut(s) | 262, 436, 448, 486, 784, 970, 1390 |
| LmnI | GCTCC | 1 cut(s) | 347 |
| Lsp1109I | GCAGC | 2 cut(s) | 59, 940 |
| LweI | GCATC | 1 cut(s) | 173 |
| MaeI | CTAG | 7 cut(s) | 161, 236, 288, 875, 992, 1053, 1077 |
| MaeII | ACGT | 2 cut(s) | 77, 708 |
| MaeIII | GTNAC | 7 cut(s) | 61, 392, 551, 709, 888, 1280, 1357 |
| MalI | GATC | 7 cut(s) | 264, 438, 450, 488, 786, 972, 1392 |
| MboI | GATC | 7 cut(s) | 262, 436, 448, 486, 784, 970, 1390 |
| MfeI | CAATTG | 1 cut(s) | 648 |
| MflI | RGATCY | 3 cut(s) | 436, 448, 1390 |
| MhlI | GDGCHC | 1 cut(s) | 1438 |
| MlyI | GAGTC | 1 cut(s) | 569 |
| MmeI | TCCRAC | 1 cut(s) | 1433 |
| MroXI | GAANNNNTTC | 1 cut(s) | 148 |
| MseI | TTAA | 4 cut(s) | 218, 849, 1034, 1260 |
| MslI | CAYNNNNRTG | 3 cut(s) | 819, 895, 1146 |
| MspA1I | CMGCKG | 1 cut(s) | 68 |
| MspI | CCGG | 2 cut(s) | 299, 810 |
| MspR9I | CCNGG | 2 cut(s) | 321, 360 |
| MunI | CAATTG | 1 cut(s) | 648 |
| MvaI | CCWGG | 2 cut(s) | 321, 360 |
| MvnI | CGCG | 1 cut(s) | 68 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 170 |
| NcoI | CCATGG | 1 cut(s) | 1335 |
| NdeII | GATC | 7 cut(s) | 262, 436, 448, 486, 784, 970, 1390 |
| NlaIV | GGNNCC | 4 cut(s) | 343, 658, 921, 1435 |
| NmuCI | GTSAC | 5 cut(s) | 61, 551, 709, 888, 1280 |
| NspI | RCATGY | 3 cut(s) | 703, 889, 900 |
| PceI | AGGCCT | 1 cut(s) | 952 |
| PciI | ACATGT | 3 cut(s) | 699, 885, 896 |
| PdmI | GAANNNNTTC | 1 cut(s) | 148 |
| PfeI | GAWTC | 4 cut(s) | 198, 902, 1331, 1403 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 251 |
| PkrI | GCNGC | 5 cut(s) | 18, 49, 175, 257, 930 |
| PleI | GAGTC | 1 cut(s) | 568 |
| PpsI | GAGTC | 1 cut(s) | 568 |
| PscI | ACATGT | 3 cut(s) | 699, 885, 896 |
| PshBI | ATTAAT | 1 cut(s) | 1260 |
| PsiI | TTATAA | 1 cut(s) | 140 |
| Psp6I | CCWGG | 2 cut(s) | 319, 358 |
| PspGI | CCWGG | 2 cut(s) | 319, 358 |
| PspN4I | GGNNCC | 4 cut(s) | 343, 658, 921, 1435 |
| PspPI | GGNCC | 2 cut(s) | 296, 500 |
| PsrI | GAACNNNNNNTAC | 4 cut(s) | 231, 263, 680, 712 |
| PstI | CTGCAG | 1 cut(s) | 930 |
| PsuI | RGATCY | 3 cut(s) | 436, 448, 1390 |
| RsaI | GTAC | 5 cut(s) | 249, 658, 698, 761, 873 |
| RsaNI | GTAC | 5 cut(s) | 248, 657, 697, 760, 872 |
| RseI | CAYNNNNRTG | 3 cut(s) | 819, 895, 1146 |
| SacII | CCGCGG | 1 cut(s) | 69 |
| SaqAI | TTAA | 4 cut(s) | 218, 849, 1034, 1260 |
| SatI | GCNGC | 5 cut(s) | 17, 48, 174, 256, 929 |
| Sau3AI | GATC | 7 cut(s) | 262, 436, 448, 486, 784, 970, 1390 |
| Sau96I | GGNCC | 2 cut(s) | 296, 500 |
| ScaI | AGTACT | 1 cut(s) | 873 |
| SchI | GAGTC | 1 cut(s) | 569 |
| ScrFI | CCNGG | 2 cut(s) | 321, 360 |
| SduI | GDGCHC | 1 cut(s) | 1438 |
| SfaNI | GCATC | 1 cut(s) | 173 |
| SfcI | CTRYAG | 1 cut(s) | 926 |
| Sfr303I | CCGCGG | 1 cut(s) | 69 |
| SgrBI | CCGCGG | 1 cut(s) | 69 |
| SinI | GGWCC | 2 cut(s) | 296, 500 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 819, 895, 1146 |
| SpeI | ACTAGT | 1 cut(s) | 874 |
| SseBI | AGGCCT | 1 cut(s) | 952 |
| SsiI | CCGC | 5 cut(s) | 16, 66, 68, 173, 255 |
| SspI | AATATT | 1 cut(s) | 118 |
| SspMI | CTAG | 7 cut(s) | 161, 236, 288, 875, 992, 1053, 1077 |
| StuI | AGGCCT | 1 cut(s) | 952 |
| StyD4I | CCNGG | 2 cut(s) | 319, 358 |
| StyI | CCWWGG | 1 cut(s) | 1335 |
| TaaI | ACNGT | 7 cut(s) | 307, 531, 557, 871, 1031, 1175, 1241 |
| TaiI | ACGT | 2 cut(s) | 80, 711 |
| TaqI | TCGA | 5 cut(s) | 540, 567, 719, 774, 973 |
| TatI | WGTACW | 3 cut(s) | 247, 696, 871 |
| TauI | GCSGC | 3 cut(s) | 19, 176, 258 |
| TfiI | GAWTC | 4 cut(s) | 198, 902, 1331, 1403 |
| Tru1I | TTAA | 4 cut(s) | 218, 849, 1034, 1260 |
| Tru9I | TTAA | 4 cut(s) | 218, 849, 1034, 1260 |
| TscAI | CASTG | 3 cut(s) | 334, 554, 1180 |
| TseFI | GTSAC | 5 cut(s) | 61, 551, 709, 888, 1280 |
| TseI | GCWGC | 2 cut(s) | 47, 928 |
| Tsp45I | GTSAC | 5 cut(s) | 61, 551, 709, 888, 1280 |
| TspDTI | ATGAA | 6 cut(s) | 628, 632, 894, 1134, 1215, 1248 |
| TspGWI | ACGGA | 1 cut(s) | 705 |
| TspRI | CASTG | 3 cut(s) | 334, 554, 1180 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 251 |
| VpaK11BI | GGWCC | 2 cut(s) | 296, 500 |
| VspI | ATTAAT | 1 cut(s) | 1260 |
| XapI | RAATTY | 4 cut(s) | 134, 148, 1319, 1415 |
| XbaI | TCTAGA | 1 cut(s) | 287 |
| XceI | RCATGY | 3 cut(s) | 703, 889, 900 |
| XmnI | GAANNNNTTC | 1 cut(s) | 148 |
| XspI | CTAG | 7 cut(s) | 161, 236, 288, 875, 992, 1053, 1077 |
| ZrmI | AGTACT | 1 cut(s) | 873 |