RLG00000022080

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0001042
Physical Location & Seq
Forward (+)
80736073 .. 80737476
1404 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000022080

Sequence Viewer

Length: 1134 bp
ATGGCGTGGTGTAGACGGCGATGTATTGCGATGTTGAGAGATTCTACAACCAGAAAAACAGCGGCGGCAGCAACGTCAACGTTAGCAAGCAACTGGGAGAAGGAGACAAAGAAAATTAGCATGTTTTCTGAATTAATCAAAAATTCTACTACTTTAGCACCACTTATGGCGGAGGAGAAAGACAAGAAAAGAACCATGAAAGACCACTTATTGGCACCACCAACTGAGGGTGATCATGGCGGCGATGAACTTAAGTTAGGGGAAGTTGCTTATAGATGCGGACCAGACACGAACGTTCCGGGCAGTATGTGCACTAGTGTCATCGGCTCCAAAATTGTTTTCTCCTGTGGCAAGACATTTCACAGAAAGAAAAGCACTAGTACTCGAATGCCCGAGACGCCCGAGATGATTTTAAAGGTGGCTGGCGAGCTCTATTGTTTTGGTGGCCCATGTGACTCCGAGTCCTTCGAGGTATTTGACAAGACAAATGAGAAATGGTTGCCTCTGGATGTGCCTCCTCAGAGATATCCTTACAGCTTCTGTCATACAATTGCGGGAACCAAAATATTACTTTGGGGGGAAAACCAGACCGGAGTATTCGGGTTTGACGTGACTCACCCAGAAAAGGGATGGACAGAGTTGGACTCTTGTTTGGGAAGCTGCATTCACTATGTTAATGGTTATGGTCAGCTATTTGTCAAGTTGAAGTCTCATTGTGGTGATGGTGATGGTTTTTTAATGTTCTCCTGTAATTTATTACAACATCAGACTGTTAGAGTCTTTCATATTTCGCATGAATGTGATTCTATGAAACGTATGGAACCCCTGCAGCTGCCAAAATTGCCTCATAAATTTCCTGATTATGATTATTTTTCTGCTGGTGATGATGATGACGATGATGATGATGATGAGGATGATGTGAACGAGGAAGAGCAGGAGCAGGGGGAGGAAGAGGAGGAGGTGGATGTTAGCAGGGTGAGAACTCTTGTCATAATATTTGAATACGAAATTCCGGAGGAAACGACGGACATCAAGAACAAATTGCTGACTAGTCGCTGCCTGGAGTACTCTATGCACAACCCTGAAGAAGTTAGGAACACCAGTTCGACTCTTATTGGCGCTTATGTGATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

378

Amino Acids

42.67

Weight (kDa)

4.95

Isoelectric Point (pI)

51.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 214
AccB7I CCANNNNNTGG 1 cut(s) 211
AccI GTMKAC 1 cut(s) 13
AccIII TCCGGA 1 cut(s) 1012
AciI CCGC 6 cut(s) 62, 65, 170, 240, 279, 554
AclI AACGTT 2 cut(s) 80, 294
AcsI RAATTY 3 cut(s) 142, 851, 1008
AcuI CTGAAG 1 cut(s) 1104
AcyI GRCGYC 1 cut(s) 398
AfaI GTAC 2 cut(s) 382, 1067
AfiI CCNNNNNNNGG 4 cut(s) 211, 227, 625, 626
AflII CTTAAG 1 cut(s) 251
AgsI TTSAA 2 cut(s) 706, 1001
AhdI GACNNNNNGTC 1 cut(s) 460
AhlI ACTAGT 3 cut(s) 314, 377, 1049
AjiI CACGTC 1 cut(s) 610
AjnI CCWGG 1 cut(s) 1059
AjuI GAANNNNNNNTTGG 2 cut(s) 323, 355
AloI GAACNNNNNNTCC 2 cut(s) 1087, 1119
AluBI AGCT 5 cut(s) 430, 537, 660, 691, 832
AluI AGCT 5 cut(s) 430, 537, 660, 691, 832
Alw21I GWGCWC 2 cut(s) 314, 432
Alw26I GTCTC 3 cut(s) 98, 389, 714
Alw44I GTGCAC 1 cut(s) 310
AlwNI CAGNNNCTG 1 cut(s) 540
Ama87I CYCGRG 2 cut(s) 392, 401
Aor13HI TCCGGA 1 cut(s) 1012
AoxI GGCC 1 cut(s) 445
ApaLI GTGCAC 1 cut(s) 310
ApeKI GCWGC 5 cut(s) 68, 660, 829, 832, 1056
ApoI RAATTY 3 cut(s) 142, 851, 1008
AseI ATTAAT 1 cut(s) 134
AspLEI GCGC 1 cut(s) 1121
AspS9I GGNCC 2 cut(s) 281, 446
AsuC2I CCSGG 1 cut(s) 300
AsuHPI GGTGA 6 cut(s) 242, 608, 731, 737, 893, 988
AvaI CYCGRG 2 cut(s) 392, 401
AvaII GGWCC 1 cut(s) 281
BaeGI GKGCMC 1 cut(s) 314
BanI GGYRCC 1 cut(s) 214
BanII GRGCYC 1 cut(s) 432
Bbv12I GWGCWC 2 cut(s) 314, 432
BbvI GCAGC 5 cut(s) 80, 647, 819, 841, 1043
BccI CCATC 3 cut(s) 624, 716, 722
BceAI ACGGC 1 cut(s) 32
BciT130I CCWGG 1 cut(s) 1061
BclI TGATCA 1 cut(s) 232
BcnI CCSGG 1 cut(s) 300
BcoDI GTCTC 3 cut(s) 98, 389, 714
BcuI ACTAGT 3 cut(s) 314, 377, 1049
BfaI CTAG 3 cut(s) 315, 378, 1050
BfmI CTRYAG 1 cut(s) 827
BfoI RGCGCY 1 cut(s) 1122
BfrI CTTAAG 1 cut(s) 251
BisI GCNGC 8 cut(s) 63, 66, 69, 241, 661, 830, 833, 1057
BlsI GCNGC 8 cut(s) 64, 67, 70, 242, 662, 831, 834, 1058
BmcAI AGTACT 2 cut(s) 382, 1067
Bme1390I CCNGG 2 cut(s) 300, 1061
Bme18I GGWCC 1 cut(s) 281
BmeRI GACNNNNNGTC 1 cut(s) 460
BmeT110I CYCGRG 2 cut(s) 392, 401
BmgBI CACGTC 1 cut(s) 610
BmgT120I GGNCC 2 cut(s) 281, 446
BmiI GGNNCC 4 cut(s) 216, 328, 559, 822
BmrFI CCNGG 2 cut(s) 300, 1061
BmrI ACTGGG 1 cut(s) 103
BmsI GCATC 1 cut(s) 266
BmuI ACTGGG 1 cut(s) 103
BplI GAGNNNNNCTC 2 cut(s) 629, 661
BpmI CTGGAG 1 cut(s) 1082
BpuMI CCSGG 1 cut(s) 300
BsaHI GRCGYC 1 cut(s) 398
BsaWI WCCGGW 2 cut(s) 590, 1012
Bsc4I CCNNNNNNNGG 4 cut(s) 211, 227, 625, 626
Bse1I ACTGG 2 cut(s) 98, 1101
BseAI TCCGGA 1 cut(s) 1012
BseBI CCWGG 1 cut(s) 1061
BseGI GGATG 4 cut(s) 514, 635, 919, 970
BseLI CCNNNNNNNGG 4 cut(s) 211, 227, 625, 626
BseMII CTCAG 2 cut(s) 216, 533
BseNI ACTGG 2 cut(s) 98, 1101
BseRI GAGGAG 4 cut(s) 188, 507, 968, 971
BseSI GKGCMC 1 cut(s) 314
BseXI GCAGC 5 cut(s) 80, 647, 819, 841, 1043
BshFI GGCC 1 cut(s) 447
BshNI GGYRCC 1 cut(s) 214
BsiHKAI GWGCWC 2 cut(s) 314, 432
BsiHKCI CYCGRG 2 cut(s) 392, 401
BsiSI CCGG 3 cut(s) 299, 591, 1013
BslI CCNNNNNNNGG 4 cut(s) 211, 227, 625, 626
BsmAI GTCTC 3 cut(s) 98, 389, 714
BsmBI CGTCTC 1 cut(s) 389
BsmI GAATGC 2 cut(s) 393, 663
BsnI GGCC 1 cut(s) 447
BsoBI CYCGRG 2 cut(s) 392, 401
Bsp1286I GDGCHC 2 cut(s) 314, 432
Bsp13I TCCGGA 1 cut(s) 1012
Bsp143I GATC 2 cut(s) 232, 1128
BspACI CCGC 6 cut(s) 62, 65, 170, 240, 279, 554
BspANI GGCC 1 cut(s) 447
BspCNI CTCAG 2 cut(s) 217, 532
BspEI TCCGGA 1 cut(s) 1012
BspLI GGNNCC 4 cut(s) 216, 328, 559, 822
BspMAI CTGCAG 1 cut(s) 831
BspQI GCTCTTC 1 cut(s) 924
BspT107I GGYRCC 1 cut(s) 214
BspTI CTTAAG 1 cut(s) 251
BsrI ACTGG 2 cut(s) 98, 1101
BssMI GATC 2 cut(s) 232, 1128
BssNI GRCGYC 1 cut(s) 398
Bst2UI CCWGG 1 cut(s) 1061
Bst4CI ACNGT 1 cut(s) 772
Bst6I CTCTTC 2 cut(s) 924, 945
BstACI GRCGYC 1 cut(s) 398
BstAFI CTTAAG 1 cut(s) 251
BstAPI GCANNNNNTGC 1 cut(s) 309
BstC8I GCNNGC 3 cut(s) 88, 424, 428
BstDEI CTNAG 2 cut(s) 225, 519
BstF5I GGATG 4 cut(s) 514, 635, 919, 970
BstH2I RGCGCY 1 cut(s) 1122
BstHHI GCGC 1 cut(s) 1121
BstKTI GATC 2 cut(s) 235, 1131
BstMAI GTCTC 3 cut(s) 98, 389, 714
BstMBI GATC 2 cut(s) 232, 1128
BstMWI GCNNNNNNNGC 4 cut(s) 68, 309, 397, 841
BstNI CCWGG 1 cut(s) 1061
BstNSI RCATGY 1 cut(s) 124
BstSCI CCNGG 2 cut(s) 298, 1059
BstSFI CTRYAG 1 cut(s) 827
BstSLI GKGCMC 1 cut(s) 314
BstV1I GCAGC 5 cut(s) 80, 647, 819, 841, 1043
BsuRI GGCC 1 cut(s) 447
BtgZI GCGATG 3 cut(s) 34, 44, 258
BtrI CACGTC 1 cut(s) 610
BtsCI GGATG 4 cut(s) 514, 635, 919, 970
Cac8I GCNNGC 3 cut(s) 88, 424, 428
CaiI CAGNNNCTG 1 cut(s) 540
CfoI GCGC 1 cut(s) 1121
Cfr13I GGNCC 2 cut(s) 281, 446
CseI GACGC 1 cut(s) 406
Csp6I GTAC 2 cut(s) 381, 1066
CviAII CATG 5 cut(s) 121, 196, 236, 450, 794
CviJI RGCY 8 cut(s) 327, 422, 430, 447, 537, 660, 691, 832
CviKI_1 RGCY 8 cut(s) 327, 422, 430, 447, 537, 660, 691, 832
CviQI GTAC 2 cut(s) 381, 1066
DdeI CTNAG 2 cut(s) 225, 519
DpnI GATC 2 cut(s) 234, 1130
DpnII GATC 2 cut(s) 232, 1128
DraI TTTAAA 1 cut(s) 414
DriI GACNNNNNGTC 1 cut(s) 460
Eam1104I CTCTTC 2 cut(s) 924, 945
Eam1105I GACNNNNNGTC 1 cut(s) 460
EarI CTCTTC 2 cut(s) 924, 945
EciI GGCGGA 1 cut(s) 185
Ecl136II GAGCTC 1 cut(s) 430
Eco24I GRGCYC 1 cut(s) 432
Eco32I GATATC 1 cut(s) 527
Eco47I GGWCC 1 cut(s) 281
Eco53kI GAGCTC 1 cut(s) 430
Eco57I CTGAAG 1 cut(s) 1104
Eco88I CYCGRG 2 cut(s) 392, 401
EcoICRI GAGCTC 1 cut(s) 430
EcoRII CCWGG 1 cut(s) 1059
EcoRV GATATC 1 cut(s) 527
EcoT38I GRGCYC 1 cut(s) 432
Esp3I CGTCTC 1 cut(s) 389
FaeI CATG 5 cut(s) 124, 199, 239, 453, 797
FatI CATG 5 cut(s) 120, 195, 235, 449, 793
FauI CCCGC 1 cut(s) 547
FbaI TGATCA 1 cut(s) 232
FblI GTMKAC 1 cut(s) 13
Fnu4HI GCNGC 8 cut(s) 63, 66, 69, 241, 661, 830, 833, 1057
FokI GGATG 4 cut(s) 521, 642, 926, 977
FriOI GRGCYC 1 cut(s) 432
Fsp4HI GCNGC 8 cut(s) 63, 66, 69, 241, 661, 830, 833, 1057
FspBI CTAG 3 cut(s) 315, 378, 1050
GlaI GCGC 1 cut(s) 1120
GluI GCNGC 8 cut(s) 63, 66, 69, 241, 661, 830, 833, 1057
GsuI CTGGAG 1 cut(s) 1082
HaeII RGCGCY 1 cut(s) 1122
HaeIII GGCC 1 cut(s) 447
HapII CCGG 3 cut(s) 299, 591, 1013
HgaI GACGC 1 cut(s) 406
HhaI GCGC 1 cut(s) 1121
Hin1I GRCGYC 1 cut(s) 398
Hin1II CATG 5 cut(s) 124, 199, 239, 453, 797
Hin6I GCGC 1 cut(s) 1119
HinP1I GCGC 1 cut(s) 1119
HincII GTYRAC 1 cut(s) 78
HindII GTYRAC 1 cut(s) 78
HinfI GANTC 8 cut(s) 41, 455, 461, 613, 644, 777, 803, 1108
HpaII CCGG 3 cut(s) 299, 591, 1013
HphI GGTGA 6 cut(s) 242, 608, 731, 737, 893, 988
Hpy166II GTNNAC 4 cut(s) 14, 78, 312, 922
Hpy188I TCNGA 4 cut(s) 130, 460, 522, 768
Hpy188III TCNNGA 4 cut(s) 506, 857, 1013, 1033
Hpy8I GTNNAC 4 cut(s) 14, 78, 312, 922
Hpy99I CGWCG 1 cut(s) 1027
HpyAV CCTTC 2 cut(s) 94, 475
HpyCH4III ACNGT 1 cut(s) 772
HpyCH4IV ACGT 5 cut(s) 74, 80, 294, 609, 814
HpyCH4V TGCA 4 cut(s) 312, 663, 829, 1075
HpyF10VI GCNNNNNNNGC 4 cut(s) 68, 309, 397, 841
HpyF3I CTNAG 2 cut(s) 225, 519
HpySE526I ACGT 5 cut(s) 74, 80, 294, 609, 814
Hsp92I GRCGYC 1 cut(s) 398
Hsp92II CATG 5 cut(s) 124, 199, 239, 453, 797
HspAI GCGC 1 cut(s) 1119
Kpn2I TCCGGA 1 cut(s) 1012
Ksp22I TGATCA 1 cut(s) 232
Kzo9I GATC 2 cut(s) 232, 1128
LguI GCTCTTC 1 cut(s) 924
LmnI GCTCC 2 cut(s) 332, 937
Lsp1109I GCAGC 5 cut(s) 80, 647, 819, 841, 1043
LweI GCATC 1 cut(s) 266
MaeI CTAG 3 cut(s) 315, 378, 1050
MaeII ACGT 5 cut(s) 74, 80, 294, 609, 814
MaeIII GTNAC 2 cut(s) 452, 610
MalI GATC 2 cut(s) 234, 1130
MboI GATC 2 cut(s) 232, 1128
MboII GAAGA 3 cut(s) 941, 962, 1097
MfeI CAATTG 1 cut(s) 549
MhlI GDGCHC 2 cut(s) 314, 432
MlyI GAGTC 6 cut(s) 449, 470, 607, 638, 786, 1102
MmeI TCCRAC 1 cut(s) 621
MroI TCCGGA 1 cut(s) 1012
MseI TTAA 5 cut(s) 134, 252, 413, 675, 737
MslI CAYNNNNRTG 2 cut(s) 717, 798
MspA1I CMGCKG 2 cut(s) 62, 832
MspCI CTTAAG 1 cut(s) 251
MspI CCGG 3 cut(s) 299, 591, 1013
MspR9I CCNGG 2 cut(s) 300, 1061
MunI CAATTG 1 cut(s) 549
Mva1269I GAATGC 2 cut(s) 393, 663
MvaI CCWGG 1 cut(s) 1061
MwoI GCNNNNNNNGC 4 cut(s) 68, 309, 397, 841
NciI CCSGG 1 cut(s) 300
NdeII GATC 2 cut(s) 232, 1128
NlaIII CATG 5 cut(s) 124, 199, 239, 453, 797
NlaIV GGNNCC 4 cut(s) 216, 328, 559, 822
NmuCI GTSAC 2 cut(s) 452, 610
NspI RCATGY 1 cut(s) 124
PciSI GCTCTTC 1 cut(s) 924
PcsI WCGNNNNNNNCGW 1 cut(s) 606
PctI GAATGC 2 cut(s) 393, 663
PfeI GAWTC 2 cut(s) 41, 803
PflMI CCANNNNNTGG 1 cut(s) 211
PkrI GCNGC 8 cut(s) 64, 67, 70, 242, 662, 831, 834, 1058
PleI GAGTC 6 cut(s) 449, 469, 607, 638, 785, 1102
PpsI GAGTC 6 cut(s) 449, 469, 607, 638, 785, 1102
PshBI ATTAAT 1 cut(s) 134
Psp124BI GAGCTC 1 cut(s) 432
Psp1406I AACGTT 2 cut(s) 80, 294
Psp6I CCWGG 1 cut(s) 1059
PspGI CCWGG 1 cut(s) 1059
PspN4I GGNNCC 4 cut(s) 216, 328, 559, 822
PspPI GGNCC 2 cut(s) 281, 446
PstI CTGCAG 1 cut(s) 831
PstNI CAGNNNCTG 1 cut(s) 540
PvuII CAGCTG 1 cut(s) 832
RsaI GTAC 2 cut(s) 382, 1067
RsaNI GTAC 2 cut(s) 381, 1066
RseI CAYNNNNRTG 2 cut(s) 717, 798
SacI GAGCTC 1 cut(s) 432
SapI GCTCTTC 1 cut(s) 924
SaqAI TTAA 5 cut(s) 134, 252, 413, 675, 737
SatI GCNGC 8 cut(s) 63, 66, 69, 241, 661, 830, 833, 1057
Sau3AI GATC 2 cut(s) 232, 1128
Sau96I GGNCC 2 cut(s) 281, 446
ScaI AGTACT 2 cut(s) 382, 1067
SchI GAGTC 6 cut(s) 449, 470, 607, 638, 786, 1102
ScrFI CCNGG 2 cut(s) 300, 1061
SduI GDGCHC 2 cut(s) 314, 432
SfaNI GCATC 1 cut(s) 266
SfcI CTRYAG 1 cut(s) 827
SinI GGWCC 1 cut(s) 281
SmiMI CAYNNNNRTG 2 cut(s) 717, 798
SmlI CTYRAG 1 cut(s) 251
SmoI CTYRAG 1 cut(s) 251
SpeI ACTAGT 3 cut(s) 314, 377, 1049
SsiI CCGC 6 cut(s) 62, 65, 170, 240, 279, 554
SspI AATATT 2 cut(s) 567, 996
SspMI CTAG 3 cut(s) 315, 378, 1050
SstI GAGCTC 1 cut(s) 432
StyD4I CCNGG 2 cut(s) 298, 1059
TaaI ACNGT 1 cut(s) 772
TaiI ACGT 5 cut(s) 77, 83, 297, 612, 817
TaqI TCGA 3 cut(s) 385, 468, 1106
TatI WGTACW 2 cut(s) 380, 1065
TauI GCSGC 3 cut(s) 65, 68, 243
TfiI GAWTC 2 cut(s) 41, 803
Tru1I TTAA 5 cut(s) 134, 252, 413, 675, 737
Tru9I TTAA 5 cut(s) 134, 252, 413, 675, 737
TseFI GTSAC 2 cut(s) 452, 610
TseI GCWGC 5 cut(s) 68, 660, 829, 832, 1056
Tsp45I GTSAC 2 cut(s) 452, 610
TspDTI ATGAA 5 cut(s) 212, 261, 773, 810, 824
TspGWI ACGGA 1 cut(s) 1040
Van91I CCANNNNNTGG 1 cut(s) 211
Vha464I CTTAAG 1 cut(s) 251
VneI GTGCAC 1 cut(s) 310
VpaK11BI GGWCC 1 cut(s) 281
VspI ATTAAT 1 cut(s) 134
XapI RAATTY 3 cut(s) 142, 851, 1008
XceI RCATGY 1 cut(s) 124
XcmI CCANNNNNNNNNTGG 1 cut(s) 627
XmiI GTMKAC 1 cut(s) 13
XspI CTAG 3 cut(s) 315, 378, 1050
ZrmI AGTACT 2 cut(s) 382, 1067
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.