RLG00000021943

RNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0001042
Physical Location & Seq
Reverse (-)
79446977 .. 79448365
1389 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000021943

Sequence Viewer

Length: 1389 bp
ATGGCGTGGTGTAGACGGCGGTGTCTTGCGATATTAGGAACAACTAGAAAAACAGCGGCGGGGGCAACGTCAAAGATAGCAAGCAAGTGGGAGAAGGAGGCGAAGAAAACTAGCATGTTTTCTGAATTAATCAGAAGAAATTTTGCTACTTTAGCACCACTTATGGTGGAGGAGAAAGACAATAAAGGAACCATGAAAGAAGAAAGATTGAAGAGACGTAGGTCTCTCTACTTATGTTTTGAGGAGCAGATAATTCGTTTTAATGTTGCTCACGTTATTCAATCTATTGAATTGAGCCACGTGTTGGCAGCACCAACTGATGGTGATCATGGCTGCGATGAACTTAAGTTAGGTGAAGTTGCTTATAGATTCGGACCGGACTCTTATGTTCCCCGCATGATGAGCAATAGTGTCATCGGCTCCAAAATAATTTTCTCCGGTGGCATAATATTTAACAGAAAGGAAAGCACTACTCCTCCACCCAAGACGATTTTAAGTAAAGAAGTTTGTGTGTTTGAGACAGCTCCAAGCATAGATCCGAATCCGACATTGCAGCCCTCCCAAGTGTTTAAGACTAGTAGACCCGATCCCTTCCTAGCAGAGGTGGCTGGCCAACTATATTGTTTCGGTGGCCCATGTTACTCTGAGTCCTTCGAGGTATTTGACAAGACACATGAGAAATGGTTGCCTCTAGATGTGCCTCCTCAGAGACATCCCTACAGTGTTTGTCATGCAATTTTGGGAAACAAAATGTTACTCTGGGTAAAAAATCAGACCGGAGTAGTCGGGTTTGACGTCGCTCAACCGGAAAAAGGATGGACAGAGTTGGACTCTTGTTTGGGAAGTTGCATTCCCTATGTTAATGGTTATCATCAGCTATTTGTCAAGTTGAAGTCTCATCGTGGTGATGGTTTTCTAATGTTCTCCTGTAATTTAGAACAACCTCAGACTGTTAGAGTCTTTTACATTTCGCATGAATGTGATTCTATGAAACCTATGGAACCTCTGCAGCTGCCAAAATTGCCTCATAAATTTACTGTACCAACACGATGTCAGTTTTTTCATCTAGAAGATAATAAAGTCGGCCTTGTTTTCTTCCGTGACCGTCGTGAATATTTTTATGAGGATTATGATTATATTTCTCCTGATTACGATGATGAGGAGGAGGAGGAGGAGGTGAACGAGGAGGAGCAGGAGGAGGAAGAAGAGGAGGAGGAGGATGTTAGCAGGGTCAGAACTCTTGTCATAATATTTGAATACGAGATTGCGGAGAAATCCATGGACATCAAGTACAAATTGCTCGCCACTCGCTGCCTGGAATACTCTACCCACCCTCCTGAAGAAGGTAGGATCACCAGTTCAACCCTTATTGGTGCTTATGTGATCTAA

Protein Analysis

463

Amino Acids

53.14

Weight (kDa)

5.37

Isoelectric Point (pI)

61.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 21
AatII GACGTC 1 cut(s) 798
AccB7I CCANNNNNTGG 2 cut(s) 304, 320
AccI GTMKAC 2 cut(s) 13, 580
AciI CCGC 5 cut(s) 19, 56, 59, 394, 1268
AclWI GGATC 3 cut(s) 530, 581, 1358
AcoI YGGCCR 1 cut(s) 610
AcsI RAATTY 2 cut(s) 139, 1031
AcuI CTGAAG 1 cut(s) 1359
AcvI CACGTG 1 cut(s) 301
AcyI GRCGYC 1 cut(s) 795
AfaI GTAC 2 cut(s) 1041, 1292
AfiI CCNNNNNNNGG 5 cut(s) 304, 320, 601, 812, 1343
AflII CTTAAG 1 cut(s) 344
AflIII ACRYGT 1 cut(s) 300
AgsI TTSAA 6 cut(s) 211, 281, 290, 892, 1256, 1362
AhlI ACTAGT 1 cut(s) 575
AjnI CCWGG 1 cut(s) 1314
AjuI GAANNNNNNNTTGG 2 cut(s) 416, 448
AloI GAACNNNNNNTCC 2 cut(s) 1342, 1374
AluBI AGCT 3 cut(s) 524, 877, 1012
AluI AGCT 3 cut(s) 524, 877, 1012
Alw26I GTCTC 5 cut(s) 208, 228, 512, 703, 900
AlwI GGATC 3 cut(s) 530, 581, 1358
AoxI GGCC 3 cut(s) 610, 631, 1084
ApeKI GCWGC 6 cut(s) 308, 333, 553, 1009, 1012, 1311
ApoI RAATTY 2 cut(s) 139, 1031
AseI ATTAAT 1 cut(s) 128
AspS9I GGNCC 2 cut(s) 374, 632
AsuHPI GGTGA 5 cut(s) 335, 365, 917, 1189, 1345
AvaII GGWCC 1 cut(s) 374
BalI TGGCCA 1 cut(s) 612
BbrPI CACGTG 1 cut(s) 301
BbvI GCAGC 6 cut(s) 320, 320, 565, 999, 1021, 1298
BccI CCATC 3 cut(s) 314, 810, 902
BceAI ACGGC 1 cut(s) 32
BcgI CGANNNNNNTGC 2 cut(s) 236, 270
BciT130I CCWGG 1 cut(s) 1316
BclI TGATCA 1 cut(s) 325
BcoDI GTCTC 5 cut(s) 208, 228, 512, 703, 900
BcuI ACTAGT 1 cut(s) 575
BfaI CTAG 6 cut(s) 45, 111, 576, 596, 692, 1067
BfmI CTRYAG 2 cut(s) 718, 1007
BfrI CTTAAG 1 cut(s) 344
BisI GCNGC 7 cut(s) 57, 309, 334, 554, 1010, 1013, 1312
BlsI GCNGC 7 cut(s) 58, 310, 335, 555, 1011, 1014, 1313
Bme1390I CCNGG 1 cut(s) 1316
Bme18I GGWCC 1 cut(s) 374
BmgT120I GGNCC 2 cut(s) 374, 632
BmiI GGNNCC 3 cut(s) 190, 421, 1002
BmrFI CCNGG 1 cut(s) 1316
BoxI GACNNNNGTC 1 cut(s) 220
BplI GAGNNNNNCTC 2 cut(s) 815, 847
BsaAI YACGTR 1 cut(s) 301
BsaBI GATNNNNATC 2 cut(s) 324, 540
BsaHI GRCGYC 1 cut(s) 795
BsaI GGTCTC 1 cut(s) 228
BsaJI CCNNGG 1 cut(s) 1278
BsaWI WCCGGW 4 cut(s) 376, 437, 776, 805
BsaXI ACNNNNNCTCC 4 cut(s) 460, 490, 1318, 1348
Bsc4I CCNNNNNNNGG 5 cut(s) 304, 320, 601, 812, 1343
Bse1I ACTGG 1 cut(s) 1356
Bse3DI GCAATG 1 cut(s) 548
Bse8I GATNNNNATC 2 cut(s) 324, 540
BseBI CCWGG 1 cut(s) 1316
BseDI CCNNGG 1 cut(s) 1278
BseGI GGATG 3 cut(s) 712, 821, 1225
BseJI GATNNNNATC 2 cut(s) 324, 540
BseLI CCNNNNNNNGG 5 cut(s) 304, 320, 601, 812, 1343
BseMI GCAATG 1 cut(s) 548
BseMII CTCAG 3 cut(s) 636, 719, 959
BseNI ACTGG 1 cut(s) 1356
BseXI GCAGC 6 cut(s) 320, 320, 565, 999, 1021, 1298
BshFI GGCC 3 cut(s) 612, 633, 1086
BsiSI CCGG 4 cut(s) 377, 438, 777, 806
BslI CCNNNNNNNGG 5 cut(s) 304, 320, 601, 812, 1343
BsmAI GTCTC 5 cut(s) 208, 228, 512, 703, 900
BsmBI CGTCTC 1 cut(s) 208
BsmI GAATGC 1 cut(s) 849
BsnI GGCC 3 cut(s) 612, 633, 1086
Bso31I GGTCTC 1 cut(s) 228
Bsp143I GATC 5 cut(s) 325, 535, 586, 1350, 1383
Bsp19I CCATGG 1 cut(s) 1278
BspACI CCGC 5 cut(s) 19, 56, 59, 394, 1268
BspANI GGCC 3 cut(s) 612, 633, 1086
BspCNI CTCAG 3 cut(s) 637, 718, 958
BspLI GGNNCC 3 cut(s) 190, 421, 1002
BspMAI CTGCAG 1 cut(s) 1011
BspPI GGATC 3 cut(s) 530, 581, 1358
BspTI CTTAAG 1 cut(s) 344
BspTNI GGTCTC 1 cut(s) 228
BsrDI GCAATG 1 cut(s) 548
BsrI ACTGG 1 cut(s) 1356
BssECI CCNNGG 1 cut(s) 1278
BssMI GATC 5 cut(s) 325, 535, 586, 1350, 1383
BssNI GRCGYC 1 cut(s) 795
BssT1I CCWWGG 1 cut(s) 1278
Bst2UI CCWGG 1 cut(s) 1316
Bst4CI ACNGT 4 cut(s) 722, 952, 1039, 1106
Bst6I CTCTTC 2 cut(s) 206, 1200
BstACI GRCGYC 1 cut(s) 795
BstAFI CTTAAG 1 cut(s) 344
BstBAI YACGTR 1 cut(s) 301
BstC8I GCNNGC 3 cut(s) 82, 610, 1302
BstDEI CTNAG 3 cut(s) 645, 705, 945
BstDSI CCRYGG 1 cut(s) 1278
BstENI CCTNNNNNAGG 2 cut(s) 599, 1341
BstF5I GGATG 3 cut(s) 712, 821, 1225
BstKTI GATC 5 cut(s) 328, 538, 589, 1353, 1386
BstMAI GTCTC 5 cut(s) 208, 228, 512, 703, 900
BstMBI GATC 5 cut(s) 325, 535, 586, 1350, 1383
BstMWI GCNNNNNNNGC 5 cut(s) 62, 152, 402, 605, 1021
BstNI CCWGG 1 cut(s) 1316
BstNSI RCATGY 1 cut(s) 118
BstPAI GACNNNNGTC 1 cut(s) 220
BstSCI CCNGG 1 cut(s) 1314
BstSFI CTRYAG 2 cut(s) 718, 1007
BstV1I GCAGC 6 cut(s) 320, 320, 565, 999, 1021, 1298
BstX2I RGATCY 1 cut(s) 535
BstYI RGATCY 1 cut(s) 535
BsuRI GGCC 3 cut(s) 612, 633, 1086
BtgI CCRYGG 1 cut(s) 1278
BtgZI GCGATG 1 cut(s) 351
BtsCI GGATG 3 cut(s) 712, 821, 1225
BtsIMutI CAGTG 1 cut(s) 727
Cac8I GCNNGC 3 cut(s) 82, 610, 1302
Cfr13I GGNCC 2 cut(s) 374, 632
CpoI CGGWCCG 1 cut(s) 374
Csp6I GTAC 2 cut(s) 1040, 1291
CspI CGGWCCG 1 cut(s) 374
CviAII CATG 9 cut(s) 115, 193, 329, 397, 636, 674, 731, 974, 1279
CviQI GTAC 2 cut(s) 1040, 1291
DdeI CTNAG 3 cut(s) 645, 705, 945
DpnI GATC 5 cut(s) 327, 537, 588, 1352, 1385
DpnII GATC 5 cut(s) 325, 535, 586, 1350, 1383
DrdI GACNNNNNNGTC 1 cut(s) 21
DseDI GACNNNNNNGTC 1 cut(s) 21
EaeI YGGCCR 1 cut(s) 610
Eam1104I CTCTTC 2 cut(s) 206, 1200
EarI CTCTTC 2 cut(s) 206, 1200
Eco130I CCWWGG 1 cut(s) 1278
Eco31I GGTCTC 1 cut(s) 228
Eco47I GGWCC 1 cut(s) 374
Eco57I CTGAAG 1 cut(s) 1359
Eco72I CACGTG 1 cut(s) 301
EcoNI CCTNNNNNAGG 2 cut(s) 599, 1341
EcoRII CCWGG 1 cut(s) 1314
EcoT14I CCWWGG 1 cut(s) 1278
ErhI CCWWGG 1 cut(s) 1278
Esp3I CGTCTC 1 cut(s) 208
FaeI CATG 9 cut(s) 118, 196, 332, 400, 639, 677, 734, 977, 1282
FalI AAGNNNNNCTT 2 cut(s) 1071, 1103
FatI CATG 9 cut(s) 114, 192, 328, 396, 635, 673, 730, 973, 1278
FauI CCCGC 2 cut(s) 52, 401
FbaI TGATCA 1 cut(s) 325
FblI GTMKAC 2 cut(s) 13, 580
Fnu4HI GCNGC 7 cut(s) 57, 309, 334, 554, 1010, 1013, 1312
FokI GGATG 3 cut(s) 699, 828, 1232
Fsp4HI GCNGC 7 cut(s) 57, 309, 334, 554, 1010, 1013, 1312
FspBI CTAG 6 cut(s) 45, 111, 576, 596, 692, 1067
GluI GCNGC 7 cut(s) 57, 309, 334, 554, 1010, 1013, 1312
HaeIII GGCC 3 cut(s) 612, 633, 1086
HapII CCGG 4 cut(s) 377, 438, 777, 806
Hin1I GRCGYC 1 cut(s) 795
Hin1II CATG 9 cut(s) 118, 196, 332, 400, 639, 677, 734, 977, 1282
HinfI GANTC 7 cut(s) 369, 380, 541, 647, 830, 957, 983
HpaII CCGG 4 cut(s) 377, 438, 777, 806
HphI GGTGA 5 cut(s) 335, 365, 917, 1189, 1345
Hpy166II GTNNAC 3 cut(s) 14, 581, 1180
Hpy188III TCNNGA 5 cut(s) 692, 1067, 1109, 1145, 1337
Hpy8I GTNNAC 3 cut(s) 14, 581, 1180
Hpy99I CGWCG 2 cut(s) 800, 1110
HpyAV CCTTC 4 cut(s) 88, 601, 661, 1337
HpyCH4III ACNGT 4 cut(s) 722, 952, 1039, 1106
HpyCH4IV ACGT 5 cut(s) 68, 217, 273, 300, 795
HpyCH4V TGCA 4 cut(s) 553, 734, 849, 1009
HpyF10VI GCNNNNNNNGC 5 cut(s) 62, 152, 402, 605, 1021
HpyF3I CTNAG 3 cut(s) 645, 705, 945
HpySE526I ACGT 5 cut(s) 68, 217, 273, 300, 795
Hsp92I GRCGYC 1 cut(s) 795
Hsp92II CATG 9 cut(s) 118, 196, 332, 400, 639, 677, 734, 977, 1282
Ksp22I TGATCA 1 cut(s) 325
Kzo9I GATC 5 cut(s) 325, 535, 586, 1350, 1383
LmnI GCTCC 4 cut(s) 244, 425, 529, 1189
Lsp1109I GCAGC 6 cut(s) 320, 320, 565, 999, 1021, 1298
MaeI CTAG 6 cut(s) 45, 111, 576, 596, 692, 1067
MaeII ACGT 5 cut(s) 68, 217, 273, 300, 795
MaeIII GTNAC 3 cut(s) 638, 753, 1100
MalI GATC 5 cut(s) 327, 537, 588, 1352, 1385
MboI GATC 5 cut(s) 325, 535, 586, 1350, 1383
MboII GAAGA 9 cut(s) 115, 147, 212, 223, 1082, 1087, 1214, 1217, 1352
MflI RGATCY 1 cut(s) 535
MlsI TGGCCA 1 cut(s) 612
MluNI TGGCCA 1 cut(s) 612
MlyI GAGTC 4 cut(s) 374, 656, 824, 966
MmeI TCCRAC 2 cut(s) 569, 807
Mox20I TGGCCA 1 cut(s) 612
MscI TGGCCA 1 cut(s) 612
MseI TTAA 7 cut(s) 128, 261, 345, 453, 494, 570, 861
MslI CAYNNNNRTG 2 cut(s) 903, 978
Msp20I TGGCCA 1 cut(s) 612
MspA1I CMGCKG 2 cut(s) 56, 1012
MspCI CTTAAG 1 cut(s) 344
MspI CCGG 4 cut(s) 377, 438, 777, 806
MspR9I CCNGG 1 cut(s) 1316
Mva1269I GAATGC 1 cut(s) 849
MvaI CCWGG 1 cut(s) 1316
MwoI GCNNNNNNNGC 5 cut(s) 62, 152, 402, 605, 1021
NcoI CCATGG 1 cut(s) 1278
NdeII GATC 5 cut(s) 325, 535, 586, 1350, 1383
NlaIII CATG 9 cut(s) 118, 196, 332, 400, 639, 677, 734, 977, 1282
NlaIV GGNNCC 3 cut(s) 190, 421, 1002
NmuCI GTSAC 1 cut(s) 1100
NspI RCATGY 1 cut(s) 118
PcsI WCGNNNNNNNCGW 1 cut(s) 792
PctI GAATGC 1 cut(s) 849
PfeI GAWTC 3 cut(s) 369, 541, 983
PflMI CCANNNNNTGG 2 cut(s) 304, 320
PkrI GCNGC 7 cut(s) 58, 310, 335, 555, 1011, 1014, 1313
PleI GAGTC 4 cut(s) 374, 655, 824, 965
PmaCI CACGTG 1 cut(s) 301
PmlI CACGTG 1 cut(s) 301
PpsI GAGTC 4 cut(s) 374, 655, 824, 965
Ppu21I YACGTR 1 cut(s) 301
PshAI GACNNNNGTC 1 cut(s) 220
PshBI ATTAAT 1 cut(s) 128
Psp6I CCWGG 1 cut(s) 1314
PspCI CACGTG 1 cut(s) 301
PspGI CCWGG 1 cut(s) 1314
PspN4I GGNNCC 3 cut(s) 190, 421, 1002
PspPI GGNCC 2 cut(s) 374, 632
PstI CTGCAG 1 cut(s) 1011
PsuI RGATCY 1 cut(s) 535
PvuII CAGCTG 1 cut(s) 1012
RsaI GTAC 2 cut(s) 1041, 1292
RsaNI GTAC 2 cut(s) 1040, 1291
RseI CAYNNNNRTG 2 cut(s) 903, 978
Rsr2I CGGWCCG 1 cut(s) 374
RsrII CGGWCCG 1 cut(s) 374
SaqAI TTAA 7 cut(s) 128, 261, 345, 453, 494, 570, 861
SatI GCNGC 7 cut(s) 57, 309, 334, 554, 1010, 1013, 1312
Sau3AI GATC 5 cut(s) 325, 535, 586, 1350, 1383
Sau96I GGNCC 2 cut(s) 374, 632
SchI GAGTC 4 cut(s) 374, 656, 824, 966
ScrFI CCNGG 1 cut(s) 1316
SfcI CTRYAG 2 cut(s) 718, 1007
SinI GGWCC 1 cut(s) 374
SmiMI CAYNNNNRTG 2 cut(s) 903, 978
SmlI CTYRAG 1 cut(s) 344
SmoI CTYRAG 1 cut(s) 344
SpeI ACTAGT 1 cut(s) 575
SsiI CCGC 5 cut(s) 19, 56, 59, 394, 1268
SspI AATATT 3 cut(s) 450, 1115, 1251
SspMI CTAG 6 cut(s) 45, 111, 576, 596, 692, 1067
StyD4I CCNGG 1 cut(s) 1314
StyI CCWWGG 1 cut(s) 1278
TaaI ACNGT 4 cut(s) 722, 952, 1039, 1106
TaiI ACGT 5 cut(s) 71, 220, 276, 303, 798
TaqI TCGA 1 cut(s) 654
TatI WGTACW 1 cut(s) 1290
TauI GCSGC 1 cut(s) 59
TfiI GAWTC 3 cut(s) 369, 541, 983
Tru1I TTAA 7 cut(s) 128, 261, 345, 453, 494, 570, 861
Tru9I TTAA 7 cut(s) 128, 261, 345, 453, 494, 570, 861
TscAI CASTG 1 cut(s) 727
TseFI GTSAC 1 cut(s) 1100
TseI GCWGC 6 cut(s) 308, 333, 553, 1009, 1012, 1311
Tsp45I GTSAC 1 cut(s) 1100
TspDTI ATGAA 5 cut(s) 209, 354, 990, 1004, 1052
TspGWI ACGGA 1 cut(s) 1088
TspRI CASTG 1 cut(s) 727
Van91I CCANNNNNTGG 2 cut(s) 304, 320
Vha464I CTTAAG 1 cut(s) 344
VpaK11BI GGWCC 1 cut(s) 374
VspI ATTAAT 1 cut(s) 128
XagI CCTNNNNNAGG 2 cut(s) 599, 1341
XapI RAATTY 2 cut(s) 139, 1031
XbaI TCTAGA 2 cut(s) 691, 1066
XceI RCATGY 1 cut(s) 118
XcmI CCANNNNNNNNNTGG 1 cut(s) 1312
XmiI GTMKAC 2 cut(s) 13, 580
XspI CTAG 6 cut(s) 45, 111, 576, 596, 692, 1067
ZraI GACGTC 1 cut(s) 796
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.