Rh2BG645800

RNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0001042
Physical Location & Seq
Forward (+)
86538667 .. 86540716
2050 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG645800.1

Sequence Viewer

Length: 1404 bp
ATGGCGTGGTGTAGACGGCGGTGTATTGCGATGTTGGGAGATTTTGTAACTAGAAAAACAGCGGCGGCAGCAACGTCAACGATAGCAAGCAACTGGGAGAAGGAAACGAAGAAAATTAGAATGTTTTCTGAATTAATCAGAAGAAATTCTACTACTTTATCACCACTTATGGCGGAGGAGAAAGACAAGAAAGGAACCATGAAAGAAGAAATATTGAAAAGTAAGTCTCTCTACTTATGTTTTGAGGAGCAGATAACTTGTTGTAACATTGCTCACGTTATTCAATCTATCGATTTGAGCCACGTGTTGGCAGCACCAACTAATGGTAATCATTGCTGCGATGAACTTAAGTTAGCTGAAGTTGCTTATAGATTCGGACCGGACACTTATGTTCCCCGCATGATGAGCAATAGTGTCATCGGCTCCAAAATTATTTTCTCCGGTGGCGTGGTTTTTAACAGAAATGAAAGCGATATTAATGGAATGCCCGAGATGATTTTAAGTAAAGAAGTTTGTGCGTTTGAGACAGATCCAAGCGTAGAACTGAACCCGACATTGCAGCCCTCCCAAGCATTTAAGACTAGCAGACCCGATCCCTTCCTAGTAGAGGTAGCCGGCGAACTATATTGTTTCGGTGGCCCATGTTACTCCGAGTCCTTCGAGGTATTTGACAAGACACATGAAAAATGGTTGCCTCTGGATGTGCCTCCTCAGAGATATCCCTACAGGGACATCTGTCATGCAATTTTAGGAAACAAAATGTTACTTTGGGTAAAAAATCAGACCGGAGTATTCGGGTTTGACGTCACTCAACCTGGAAAAGGATGGACAGAGTTGGACTCTTGTTTGGGAAGCTGCATTCCCTGTGTTAATGGTTATGATCAACTATTTGTCAAGTTGAAGTCTCATCGTGGTGATGGTTTTCTAATGTTCTCCTGTAATTTAGAACAACCTCAGACTGTTAGAGTCTTTCAAATTTCACATGAATGTGATTCTATGAAACCTATGGAACCTCTGCAGCTGCCAAAATTGCCTCATCAATTTCCTGTACCAACACGATGTCAGTTTTTTCATCTAGAAGATAATAAAGTCGGCCTTGTTTTCTTCCGTGACCGTCGTGAGTATTTTTATGAGGATTATGATTATTTTTCTCCTGGTGATGATGATGAGGATGATGTGAACGAGGAAGAGCAGGGGGAGGAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGATGTTAGCAGGGTGAGAACTCTTGTCATAATATTCGAATACGAAATTGCGGAGAAATCCATGGACATCAAGTACAAGCTGCTCACCACTCGCTGCCTGGAATACTCTACCCACCCTCCTGAAGAAGGTAGGATCACGAGTTCAACCCTTATTGGCGCTTATGTGATCTAA

Protein Analysis

467

Amino Acids

53.52

Weight (kDa)

4.86

Isoelectric Point (pI)

53.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 807
AccB7I CCANNNNNTGG 2 cut(s) 307, 323
AccI GTMKAC 1 cut(s) 13
AciI CCGC 6 cut(s) 19, 62, 65, 173, 397, 1283
AclWI GGATC 3 cut(s) 524, 587, 1373
AcsI RAATTY 2 cut(s) 145, 975
AcuI CTGAAG 2 cut(s) 378, 1374
AcvI CACGTG 1 cut(s) 304
AcyI GRCGYC 1 cut(s) 804
AfaI GTAC 2 cut(s) 1050, 1307
AfiI CCNNNNNNNGG 5 cut(s) 307, 323, 607, 821, 1358
AflII CTTAAG 1 cut(s) 347
AflIII ACRYGT 1 cut(s) 303
AgsI TTSAA 5 cut(s) 217, 284, 901, 974, 1377
AjnI CCWGG 3 cut(s) 814, 1153, 1329
AjuI GAANNNNNNNTTGG 2 cut(s) 419, 451
AloI GAACNNNNNNTCC 2 cut(s) 1357, 1389
AluBI AGCT 4 cut(s) 356, 855, 1021, 1312
AluI AGCT 4 cut(s) 356, 855, 1021, 1312
Alw26I GTCTC 3 cut(s) 231, 518, 909
AlwI GGATC 3 cut(s) 524, 587, 1373
Ama87I CYCGRG 1 cut(s) 488
AoxI GGCC 2 cut(s) 637, 1093
ApeKI GCWGC 9 cut(s) 68, 311, 336, 559, 855, 1018, 1021, 1312, 1326
ApoI RAATTY 2 cut(s) 145, 975
AseI ATTAAT 2 cut(s) 134, 477
Asp700I GAANNNNTTC 2 cut(s) 124, 145
AspLEI GCGC 1 cut(s) 1391
AspS9I GGNCC 2 cut(s) 377, 638
AsuHPI GGTGA 5 cut(s) 153, 926, 1169, 1258, 1309
AsuII TTCGAA 1 cut(s) 1269
AvaI CYCGRG 1 cut(s) 488
AvaII GGWCC 1 cut(s) 377
BarI GAAGNNNNNNTAC 2 cut(s) 133, 165
BauI CACGAG 1 cut(s) 1369
BbrPI CACGTG 1 cut(s) 304
BbvI GCAGC 9 cut(s) 80, 323, 323, 571, 842, 1008, 1030, 1299, 1313
BccI CCATC 2 cut(s) 819, 911
BceAI ACGGC 1 cut(s) 32
BciT130I CCWGG 3 cut(s) 816, 1155, 1331
BclI TGATCA 1 cut(s) 880
BcoDI GTCTC 3 cut(s) 231, 518, 909
BfaI CTAG 4 cut(s) 51, 582, 602, 1076
BfmI CTRYAG 2 cut(s) 724, 1016
BfoI RGCGCY 1 cut(s) 1392
BfrI CTTAAG 1 cut(s) 347
Bme1390I CCNGG 3 cut(s) 816, 1155, 1331
Bme18I GGWCC 1 cut(s) 377
BmeT110I CYCGRG 1 cut(s) 488
BmgT120I GGNCC 2 cut(s) 377, 638
BmiI GGNNCC 3 cut(s) 196, 424, 1011
BmrFI CCNGG 3 cut(s) 816, 1155, 1331
BmrI ACTGGG 1 cut(s) 103
BmuI ACTGGG 1 cut(s) 103
BoxI GACNNNNGTC 1 cut(s) 735
BplI GAGNNNNNCTC 2 cut(s) 824, 856
Bpu14I TTCGAA 1 cut(s) 1269
Bsa29I ATCGAT 1 cut(s) 291
BsaAI YACGTR 1 cut(s) 304
BsaHI GRCGYC 1 cut(s) 804
BsaJI CCNNGG 1 cut(s) 1293
BsaWI WCCGGW 3 cut(s) 379, 440, 785
BsaXI ACNNNNNCTCC 4 cut(s) 30, 60, 1333, 1363
Bsc4I CCNNNNNNNGG 5 cut(s) 307, 323, 607, 821, 1358
Bse118I RCCGGY 1 cut(s) 614
Bse1I ACTGG 1 cut(s) 98
Bse3DI GCAATG 3 cut(s) 267, 331, 554
BseBI CCWGG 3 cut(s) 816, 1155, 1331
BseCI ATCGAT 1 cut(s) 291
BseDI CCNNGG 1 cut(s) 1293
BseGI GGATG 4 cut(s) 706, 830, 1177, 1240
BseLI CCNNNNNNNGG 5 cut(s) 307, 323, 607, 821, 1358
BseMI GCAATG 3 cut(s) 267, 331, 554
BseMII CTCAG 2 cut(s) 725, 968
BseNI ACTGG 1 cut(s) 98
BseXI GCAGC 9 cut(s) 80, 323, 323, 571, 842, 1008, 1030, 1299, 1313
BshFI GGCC 2 cut(s) 639, 1095
BshVI ATCGAT 1 cut(s) 291
BsiHKCI CYCGRG 1 cut(s) 488
BsiSI CCGG 4 cut(s) 380, 441, 615, 786
BslFI GGGAC 1 cut(s) 743
BslI CCNNNNNNNGG 5 cut(s) 307, 323, 607, 821, 1358
BsmAI GTCTC 3 cut(s) 231, 518, 909
BsmFI GGGAC 1 cut(s) 743
BsmI GAATGC 2 cut(s) 489, 858
BsnI GGCC 2 cut(s) 639, 1095
BsoBI CYCGRG 1 cut(s) 488
Bsp119I TTCGAA 1 cut(s) 1269
Bsp143I GATC 5 cut(s) 529, 592, 880, 1365, 1398
Bsp19I CCATGG 1 cut(s) 1293
BspACI CCGC 6 cut(s) 19, 62, 65, 173, 397, 1283
BspANI GGCC 2 cut(s) 639, 1095
BspCNI CTCAG 2 cut(s) 724, 967
BspDI ATCGAT 1 cut(s) 291
BspLI GGNNCC 3 cut(s) 196, 424, 1011
BspMAI CTGCAG 1 cut(s) 1020
BspPI GGATC 3 cut(s) 524, 587, 1373
BspQI GCTCTTC 1 cut(s) 1182
BspT104I TTCGAA 1 cut(s) 1269
BspTI CTTAAG 1 cut(s) 347
BsrDI GCAATG 3 cut(s) 267, 331, 554
BsrFI RCCGGY 1 cut(s) 614
BsrI ACTGG 1 cut(s) 98
BssAI RCCGGY 1 cut(s) 614
BssECI CCNNGG 1 cut(s) 1293
BssMI GATC 5 cut(s) 529, 592, 880, 1365, 1398
BssNI GRCGYC 1 cut(s) 804
BssSI CACGAG 1 cut(s) 1369
BssT1I CCWWGG 1 cut(s) 1293
Bst2BI CACGAG 1 cut(s) 1369
Bst2UI CCWGG 3 cut(s) 816, 1155, 1331
Bst4CI ACNGT 2 cut(s) 961, 1115
Bst6I CTCTTC 2 cut(s) 1182, 1197
BstACI GRCGYC 1 cut(s) 804
BstAFI CTTAAG 1 cut(s) 347
BstBAI YACGTR 1 cut(s) 304
BstBI TTCGAA 1 cut(s) 1269
BstC8I GCNNGC 2 cut(s) 88, 616
BstDEI CTNAG 2 cut(s) 711, 954
BstDSI CCRYGG 1 cut(s) 1293
BstENI CCTNNNNNAGG 3 cut(s) 605, 819, 1356
BstF5I GGATG 4 cut(s) 706, 830, 1177, 1240
BstH2I RGCGCY 1 cut(s) 1392
BstHHI GCGC 1 cut(s) 1391
BstKTI GATC 5 cut(s) 532, 595, 883, 1368, 1401
BstMAI GTCTC 3 cut(s) 231, 518, 909
BstMBI GATC 5 cut(s) 529, 592, 880, 1365, 1398
BstMWI GCNNNNNNNGC 4 cut(s) 68, 362, 405, 1030
BstNI CCWGG 3 cut(s) 816, 1155, 1331
BstPAI GACNNNNGTC 1 cut(s) 735
BstSCI CCNGG 3 cut(s) 814, 1153, 1329
BstSFI CTRYAG 2 cut(s) 724, 1016
BstV1I GCAGC 9 cut(s) 80, 323, 323, 571, 842, 1008, 1030, 1299, 1313
BstX2I RGATCY 1 cut(s) 529
BstYI RGATCY 1 cut(s) 529
Bsu15I ATCGAT 1 cut(s) 291
BsuRI GGCC 2 cut(s) 639, 1095
BsuTUI ATCGAT 1 cut(s) 291
BtgI CCRYGG 1 cut(s) 1293
BtgZI GCGATG 2 cut(s) 44, 354
BtsCI GGATG 4 cut(s) 706, 830, 1177, 1240
Cac8I GCNNGC 2 cut(s) 88, 616
CfoI GCGC 1 cut(s) 1391
Cfr10I RCCGGY 1 cut(s) 614
Cfr13I GGNCC 2 cut(s) 377, 638
ClaI ATCGAT 1 cut(s) 291
CpoI CGGWCCG 1 cut(s) 377
Csp6I GTAC 2 cut(s) 1049, 1306
CspI CGGWCCG 1 cut(s) 377
CviAII CATG 7 cut(s) 199, 400, 642, 680, 740, 983, 1294
CviQI GTAC 2 cut(s) 1049, 1306
DdeI CTNAG 2 cut(s) 711, 954
DpnI GATC 5 cut(s) 531, 594, 882, 1367, 1400
DpnII GATC 5 cut(s) 529, 592, 880, 1365, 1398
Eam1104I CTCTTC 2 cut(s) 1182, 1197
EarI CTCTTC 2 cut(s) 1182, 1197
EciI GGCGGA 1 cut(s) 188
Eco130I CCWWGG 1 cut(s) 1293
Eco32I GATATC 1 cut(s) 719
Eco47I GGWCC 1 cut(s) 377
Eco57I CTGAAG 2 cut(s) 378, 1374
Eco72I CACGTG 1 cut(s) 304
Eco88I CYCGRG 1 cut(s) 488
EcoNI CCTNNNNNAGG 3 cut(s) 605, 819, 1356
EcoRII CCWGG 3 cut(s) 814, 1153, 1329
EcoRV GATATC 1 cut(s) 719
EcoT14I CCWWGG 1 cut(s) 1293
ErhI CCWWGG 1 cut(s) 1293
FaeI CATG 7 cut(s) 202, 403, 645, 683, 743, 986, 1297
FalI AAGNNNNNCTT 2 cut(s) 1080, 1112
FaqI GGGAC 1 cut(s) 743
FatI CATG 7 cut(s) 198, 399, 641, 679, 739, 982, 1293
FauI CCCGC 1 cut(s) 404
FbaI TGATCA 1 cut(s) 880
FblI GTMKAC 1 cut(s) 13
FokI GGATG 4 cut(s) 713, 837, 1184, 1247
FspBI CTAG 4 cut(s) 51, 582, 602, 1076
GlaI GCGC 1 cut(s) 1390
HaeII RGCGCY 1 cut(s) 1392
HaeIII GGCC 2 cut(s) 639, 1095
HapII CCGG 4 cut(s) 380, 441, 615, 786
HhaI GCGC 1 cut(s) 1391
Hin1I GRCGYC 1 cut(s) 804
Hin1II CATG 7 cut(s) 202, 403, 645, 683, 743, 986, 1297
Hin6I GCGC 1 cut(s) 1389
HinP1I GCGC 1 cut(s) 1389
HincII GTYRAC 1 cut(s) 78
HindII GTYRAC 1 cut(s) 78
HinfI GANTC 5 cut(s) 372, 653, 839, 966, 992
HpaII CCGG 4 cut(s) 380, 441, 615, 786
HphI GGTGA 5 cut(s) 153, 926, 1169, 1258, 1309
Hpy166II GTNNAC 3 cut(s) 14, 78, 1180
Hpy188I TCNGA 7 cut(s) 130, 140, 377, 652, 714, 783, 957
Hpy188III TCNNGA 5 cut(s) 698, 1076, 1118, 1352, 1369
Hpy8I GTNNAC 3 cut(s) 14, 78, 1180
Hpy99I CGWCG 1 cut(s) 1119
HpyAV CCTTC 4 cut(s) 94, 607, 667, 1352
HpyCH4III ACNGT 2 cut(s) 961, 1115
HpyCH4IV ACGT 4 cut(s) 74, 276, 303, 804
HpyCH4V TGCA 4 cut(s) 559, 743, 858, 1018
HpyF10VI GCNNNNNNNGC 4 cut(s) 68, 362, 405, 1030
HpyF3I CTNAG 2 cut(s) 711, 954
HpySE526I ACGT 4 cut(s) 74, 276, 303, 804
Hsp92I GRCGYC 1 cut(s) 804
Hsp92II CATG 7 cut(s) 202, 403, 645, 683, 743, 986, 1297
HspAI GCGC 1 cut(s) 1389
KroI GCCGGC 1 cut(s) 614
KroNI GCCGGC 1 cut(s) 616
Ksp22I TGATCA 1 cut(s) 880
Kzo9I GATC 5 cut(s) 529, 592, 880, 1365, 1398
LguI GCTCTTC 1 cut(s) 1182
LmnI GCTCC 2 cut(s) 247, 428
Lsp1109I GCAGC 9 cut(s) 80, 323, 323, 571, 842, 1008, 1030, 1299, 1313
MaeI CTAG 4 cut(s) 51, 582, 602, 1076
MaeII ACGT 4 cut(s) 74, 276, 303, 804
MaeIII GTNAC 6 cut(s) 46, 263, 644, 762, 805, 1109
MalI GATC 5 cut(s) 531, 594, 882, 1367, 1400
MboI GATC 5 cut(s) 529, 592, 880, 1365, 1398
MboII GAAGA 8 cut(s) 121, 153, 218, 1091, 1096, 1199, 1214, 1367
MflI RGATCY 1 cut(s) 529
MlyI GAGTC 3 cut(s) 662, 833, 975
MmeI TCCRAC 1 cut(s) 816
MroNI GCCGGC 1 cut(s) 614
MroXI GAANNNNTTC 2 cut(s) 124, 145
MseI TTAA 7 cut(s) 134, 348, 456, 477, 500, 576, 870
MslI CAYNNNNRTG 3 cut(s) 912, 985, 987
MspA1I CMGCKG 2 cut(s) 62, 1021
MspCI CTTAAG 1 cut(s) 347
MspI CCGG 4 cut(s) 380, 441, 615, 786
MspR9I CCNGG 3 cut(s) 816, 1155, 1331
Mva1269I GAATGC 2 cut(s) 489, 858
MvaI CCWGG 3 cut(s) 816, 1155, 1331
MwoI GCNNNNNNNGC 4 cut(s) 68, 362, 405, 1030
NaeI GCCGGC 1 cut(s) 616
NcoI CCATGG 1 cut(s) 1293
NdeII GATC 5 cut(s) 529, 592, 880, 1365, 1398
NgoMIV GCCGGC 1 cut(s) 614
NlaIII CATG 7 cut(s) 202, 403, 645, 683, 743, 986, 1297
NlaIV GGNNCC 3 cut(s) 196, 424, 1011
NmuCI GTSAC 2 cut(s) 805, 1109
NspV TTCGAA 1 cut(s) 1269
PciSI GCTCTTC 1 cut(s) 1182
PcsI WCGNNNNNNNCGW 1 cut(s) 801
PctI GAATGC 2 cut(s) 489, 858
PdiI GCCGGC 1 cut(s) 616
PdmI GAANNNNTTC 2 cut(s) 124, 145
PfeI GAWTC 2 cut(s) 372, 992
PflMI CCANNNNNTGG 2 cut(s) 307, 323
PleI GAGTC 3 cut(s) 661, 833, 974
PmaCI CACGTG 1 cut(s) 304
PmlI CACGTG 1 cut(s) 304
PpsI GAGTC 3 cut(s) 661, 833, 974
Ppu21I YACGTR 1 cut(s) 304
PshAI GACNNNNGTC 1 cut(s) 735
PshBI ATTAAT 2 cut(s) 134, 477
Psp6I CCWGG 3 cut(s) 814, 1153, 1329
PspCI CACGTG 1 cut(s) 304
PspGI CCWGG 3 cut(s) 814, 1153, 1329
PspN4I GGNNCC 3 cut(s) 196, 424, 1011
PspPI GGNCC 2 cut(s) 377, 638
PstI CTGCAG 1 cut(s) 1020
PsuI RGATCY 1 cut(s) 529
PvuII CAGCTG 1 cut(s) 1021
RsaI GTAC 2 cut(s) 1050, 1307
RsaNI GTAC 2 cut(s) 1049, 1306
RseI CAYNNNNRTG 3 cut(s) 912, 985, 987
Rsr2I CGGWCCG 1 cut(s) 377
RsrII CGGWCCG 1 cut(s) 377
SapI GCTCTTC 1 cut(s) 1182
SaqAI TTAA 7 cut(s) 134, 348, 456, 477, 500, 576, 870
Sau3AI GATC 5 cut(s) 529, 592, 880, 1365, 1398
Sau96I GGNCC 2 cut(s) 377, 638
SchI GAGTC 3 cut(s) 662, 833, 975
ScrFI CCNGG 3 cut(s) 816, 1155, 1331
SfcI CTRYAG 2 cut(s) 724, 1016
SfuI TTCGAA 1 cut(s) 1269
SinI GGWCC 1 cut(s) 377
SmiMI CAYNNNNRTG 3 cut(s) 912, 985, 987
SmlI CTYRAG 1 cut(s) 347
SmoI CTYRAG 1 cut(s) 347
SsiI CCGC 6 cut(s) 19, 62, 65, 173, 397, 1283
SspI AATATT 2 cut(s) 213, 1266
SspMI CTAG 4 cut(s) 51, 582, 602, 1076
StyD4I CCNGG 3 cut(s) 814, 1153, 1329
StyI CCWWGG 1 cut(s) 1293
TaaI ACNGT 2 cut(s) 961, 1115
TaiI ACGT 4 cut(s) 77, 279, 306, 807
TaqI TCGA 3 cut(s) 291, 660, 1269
TatI WGTACW 1 cut(s) 1305
TauI GCSGC 2 cut(s) 65, 68
TfiI GAWTC 2 cut(s) 372, 992
Tru1I TTAA 7 cut(s) 134, 348, 456, 477, 500, 576, 870
Tru9I TTAA 7 cut(s) 134, 348, 456, 477, 500, 576, 870
TseFI GTSAC 2 cut(s) 805, 1109
TseI GCWGC 9 cut(s) 68, 311, 336, 559, 855, 1018, 1021, 1312, 1326
Tsp45I GTSAC 2 cut(s) 805, 1109
TspDTI ATGAA 7 cut(s) 215, 357, 480, 696, 999, 1013, 1061
TspGWI ACGGA 1 cut(s) 1097
Van91I CCANNNNNTGG 2 cut(s) 307, 323
Vha464I CTTAAG 1 cut(s) 347
VpaK11BI GGWCC 1 cut(s) 377
VspI ATTAAT 2 cut(s) 134, 477
XagI CCTNNNNNAGG 3 cut(s) 605, 819, 1356
XapI RAATTY 2 cut(s) 145, 975
XbaI TCTAGA 1 cut(s) 1075
XcmI CCANNNNNNNNNTGG 1 cut(s) 1327
XmiI GTMKAC 1 cut(s) 13
XmnI GAANNNNTTC 2 cut(s) 124, 145
XspI CTAG 4 cut(s) 51, 582, 602, 1076
ZraI GACGTC 1 cut(s) 805
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.