Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0001042

Physical Location & Seq

Genomic Coordinates Forward (+)

78939981 .. 78940934

Gene Structure 954 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG611500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGTTGGAAGGTTTTGCAACCAGAAAAGCAGCGGCTGCGGCGGCTACGTTAACGTTAGCAAGCAACTGGAAGAATGAGACGAAGAAAATTAGCATGTTTTCAGAATTCATAAGAAGAAATTCTTCTACTTTAGCAACACTTGAGGCAGAGGAGAAAAAGAAGAAAGGAATCATGGAAGAAGAAAGCTTTAAGTATAAGTCACTCTATTTATGTTTCGAGGAGTACACTAATGACAATGCTCATGTTATTCAATCCATCAGATTAAGCCATTTGTTGGCACCACCAGTACATGGCAGCGATGATCTGAAATTACAGAGAGTTGCTTATAGATGTGGACCGGATACTGTTGTTCCCCTAGATGTGAGTACTGGCGTCGTCGACTCCAAAATTATTCTCTTTGGTGGTAAGGTTTTTCCTCCGGTACGACATCATCATATTTTTGAATATTCACTAAGCAAAGAAGTTTGTGTGTTTGAGACAGATCCAAGCATAGATCCAAACCCGAAATTGCAGCCTTCCCAAGTTTTTAAGATTAGTAGACGTGAACCTGTTTTAGTAGAGATGGACGACACACTTTATCGTTTCGGTGGTCGGTGTGACTGTGAGTCATTCGAGGTATTTGAACCAATACAGGATGACTGGTTGCCTCTGGATGCGCCTCCTCGGAAGTATCCCTACGGCTTCACTCATGCAATTGCAGGCACCAAAATCCTACTCTGGGGCAGAAATCAGACCGGAGTGTACATGTTTGACGCGACACATCCGGAAAAAGGATGGACAGAATTAGACCCTTGTTTGGGAAGCTATATTCCCTCTATTGATGGTTATGATCAACTATTTGTCAAGTTGAAGTTTCGTCCTGGTGATGGTGAGGGTTTCCTAATGTTCTCCATTAATTTGGAACAACCTCACACGGTACTAGCCTTCCACATGTACAAGACATTGTTAAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00020 ko00190 ko01100 ko01110 ko01120 ko01130 ko01200 ko03015 ko03040 ko04714 ko04932 ko05010 ko05012 ko05016 map00020 map00190 map01100 map01110 map01120 map01130 map01200 map03015 map03040 map04714 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

RRM_1

Protein Analysis

317

Amino Acids

36.08

Weight (kDa)

6.08

Isoelectric Point (pI)

37.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001042)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g43023 FvH4_4g00821 FvH4_6g46861 FvH4_6g50642 FvH4_6g50762 FvH4_6g50763
rosa_chinensis	RchiOBHm_Chr2g0172011
rosa_laevigata	RLG00000019866 RLG00000021935 RLG00000021943 RLG00000022032 RLG00000022034 RLG00000022036 RLG00000022038 RLG00000022040 RLG00000022042 RLG00000022044 RLG00000022046 RLG00000022049 RLG00000022051 RLG00000022068 RLG00000022070 RLG00000022080 RLG00000022083 RLG00000022086 RLG00000034562
rosa_multiflora	Rmu_sc0008262.1_g000002 Rmu_sc0012445.1_g000001 Rmu_sc0012468.1_g000010 Rmu_sc0036915.1_g000001 Rmu_ssc0000252.1_g000031 Rmu_ssc0000252.1_g000036 Rmu_ssc0000252.1_g000040
rosa_roxburghii	Rroxscaffold_2G00080270 Rroxscaffold_2G00080490
rosa_rugosa	Rorug02G0547700 Rorug02G0555600 Rorug02G0555600 Rorug02G0555700 Rorug02G0556100
rosa_samantha	Rh2BG643700 Rh2BG644000 Rh2BG644100 Rh2BG644500 Rh2BG644600 Rh2BG645800 Rh2CG610600 Rh2CG610800 Rh2CG611200 Rh2CG611500 Rh2CG611700 Rh2CG612000 Rh2DG658500 Rh2DG658800 Rh2DG658900 Rh2DG659100 Rh2DG659400 Rh2DG659700 Rh2DG660000 Rh4BG019700 Rh5BG331700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	277, 701
AccB7I	CCANNNNNTGG	2 cut(s)	274, 290
AccI	GTMKAC	2 cut(s)	378, 538
AccII	CGCG	1 cut(s)	755
AccIII	TCCGGA	1 cut(s)	763
AciI	CCGC	3 cut(s)	32, 38, 41
AclI	AACGTT	1 cut(s)	53
AclWI	GGATC	2 cut(s)	476, 488
AcsI	RAATTY	2 cut(s)	104, 118
AcyI	GRCGYC	1 cut(s)	372
AfaI	GTAC	7 cut(s)	224, 288, 367, 423, 743, 918, 935
AfiI	CCNNNNNNNGG	7 cut(s)	274, 290, 718, 770, 796, 797, 866
AflIII	ACRYGT	2 cut(s)	744, 930
AgsI	TTSAA	4 cut(s)	251, 443, 623, 850
AhdI	GACNNNNNGTC	1 cut(s)	604
AjiI	CACGTC	1 cut(s)	542
AjnI	CCWGG	1 cut(s)	859
AluBI	AGCT	2 cut(s)	186, 804
AluI	AGCT	2 cut(s)	186, 804
Alw26I	GTCTC	2 cut(s)	71, 470
AlwI	GGATC	2 cut(s)	476, 488
AlwNI	CAGNNNCTG	1 cut(s)	35
Aor13HI	TCCGGA	1 cut(s)	763
ApeKI	GCWGC	4 cut(s)	29, 35, 294, 511
ApoI	RAATTY	2 cut(s)	104, 118
AseI	ATTAAT	1 cut(s)	894
Asp700I	GAANNNNTTC	2 cut(s)	118, 121
AspLEI	GCGC	1 cut(s)	658
AspS9I	GGNCC	1 cut(s)	335
AsuHPI	GGTGA	2 cut(s)	875, 881
AvaII	GGWCC	1 cut(s)	335
BaeI	ACNNNNGTAYC	2 cut(s)	333, 366
BanI	GGYRCC	2 cut(s)	277, 701
BarI	GAAGNNNNNNTAC	2 cut(s)	659, 691
BbvI	GCAGC	4 cut(s)	22, 41, 306, 523
BccI	CCATC	5 cut(s)	263, 556, 768, 815, 860
BceAI	ACGGC	1 cut(s)	694
BciT130I	CCWGG	1 cut(s)	861
BciVI	GTATCC	2 cut(s)	334, 681
BclI	TGATCA	1 cut(s)	829
BcoDI	GTCTC	2 cut(s)	71, 470
BfaI	CTAG	2 cut(s)	356, 920
BfuI	GTATCC	2 cut(s)	334, 681
BisI	GCNGC	7 cut(s)	30, 33, 36, 39, 42, 295, 512
BlsI	GCNGC	7 cut(s)	31, 34, 37, 40, 43, 296, 513
BmcAI	AGTACT	1 cut(s)	367
Bme1390I	CCNGG	1 cut(s)	861
Bme18I	GGWCC	1 cut(s)	335
BmeRI	GACNNNNNGTC	1 cut(s)	604
BmgBI	CACGTC	1 cut(s)	542
BmgT120I	GGNCC	1 cut(s)	335
BmiI	GGNNCC	2 cut(s)	279, 703
BmrFI	CCNGG	1 cut(s)	861
BmsI	GCATC	1 cut(s)	643
BpuEI	CTTGAG	1 cut(s)	161
BsaHI	GRCGYC	1 cut(s)	372
BsaJI	CCNNGG	1 cut(s)	662
BsaWI	WCCGGW	4 cut(s)	337, 418, 734, 763
Bsc4I	CCNNNNNNNGG	7 cut(s)	274, 290, 718, 770, 796, 797, 866
Bse1I	ACTGG	4 cut(s)	71, 284, 373, 644
BseAI	TCCGGA	1 cut(s)	763
BseBI	CCWGG	1 cut(s)	861
BseDI	CCNNGG	1 cut(s)	662
BseGI	GGATG	4 cut(s)	640, 658, 760, 779
BseLI	CCNNNNNNNGG	7 cut(s)	274, 290, 718, 770, 796, 797, 866
BseNI	ACTGG	4 cut(s)	71, 284, 373, 644
BseRI	GAGGAG	3 cut(s)	164, 233, 651
BseXI	GCAGC	4 cut(s)	22, 41, 306, 523
Bsh1236I	CGCG	1 cut(s)	755
BshNI	GGYRCC	2 cut(s)	277, 701
BsiSI	CCGG	4 cut(s)	338, 419, 735, 764
BslI	CCNNNNNNNGG	7 cut(s)	274, 290, 718, 770, 796, 797, 866
BsmAI	GTCTC	2 cut(s)	71, 470
BsmBI	CGTCTC	1 cut(s)	71
Bsp13I	TCCGGA	1 cut(s)	763
Bsp1407I	TGTACA	2 cut(s)	741, 933
Bsp143I	GATC	4 cut(s)	301, 481, 493, 829
BspACI	CCGC	3 cut(s)	32, 38, 41
BspEI	TCCGGA	1 cut(s)	763
BspFNI	CGCG	1 cut(s)	755
BspLI	GGNNCC	2 cut(s)	279, 703
BspPI	GGATC	2 cut(s)	476, 488
BspT107I	GGYRCC	2 cut(s)	277, 701
BsrGI	TGTACA	2 cut(s)	741, 933
BsrI	ACTGG	4 cut(s)	71, 284, 373, 644
BssECI	CCNNGG	1 cut(s)	662
BssMI	GATC	4 cut(s)	301, 481, 493, 829
BssNI	GRCGYC	1 cut(s)	372
Bst2UI	CCWGG	1 cut(s)	861
Bst4CI	ACNGT	3 cut(s)	346, 602, 916
BstACI	GRCGYC	1 cut(s)	372
BstAPI	GCANNNNNTGC	1 cut(s)	35
BstAUI	TGTACA	2 cut(s)	741, 933
BstC8I	GCNNGC	2 cut(s)	61, 700
BstDEI	CTNAG	1 cut(s)	452
BstF5I	GGATG	4 cut(s)	640, 658, 760, 779
BstFNI	CGCG	1 cut(s)	755
BstHHI	GCGC	1 cut(s)	658
BstKTI	GATC	4 cut(s)	304, 484, 496, 832
BstMAI	GTCTC	2 cut(s)	71, 470
BstMBI	GATC	4 cut(s)	301, 481, 493, 829
BstMWI	GCNNNNNNNGC	3 cut(s)	35, 38, 41
BstNI	CCWGG	1 cut(s)	861
BstNSI	RCATGY	3 cut(s)	97, 748, 934
BstSCI	CCNGG	1 cut(s)	859
BstUI	CGCG	1 cut(s)	755
BstV1I	GCAGC	4 cut(s)	22, 41, 306, 523
BstX2I	RGATCY	2 cut(s)	481, 493
BstXI	CCANNNNNNTGG	1 cut(s)	898
BstYI	RGATCY	2 cut(s)	481, 493
BsuI	GTATCC	2 cut(s)	334, 681
BtgZI	GCGATG	1 cut(s)	312
BtrI	CACGTC	1 cut(s)	542
BtsCI	GGATG	4 cut(s)	640, 658, 760, 779
Cac8I	GCNNGC	2 cut(s)	61, 700
CaiI	CAGNNNCTG	1 cut(s)	35
CfoI	GCGC	1 cut(s)	658
Cfr13I	GGNCC	1 cut(s)	335
CseI	GACGC	2 cut(s)	361, 761
Csp6I	GTAC	7 cut(s)	223, 287, 366, 422, 742, 917, 934
CviAII	CATG	7 cut(s)	94, 172, 242, 290, 689, 745, 931
CviJI	RGCY	8 cut(s)	35, 44, 186, 267, 514, 681, 804, 923
CviKI_1	RGCY	8 cut(s)	35, 44, 186, 267, 514, 681, 804, 923
CviQI	GTAC	7 cut(s)	223, 287, 366, 422, 742, 917, 934
DdeI	CTNAG	1 cut(s)	452
DpnI	GATC	4 cut(s)	303, 483, 495, 831
DpnII	GATC	4 cut(s)	301, 481, 493, 829
DriI	GACNNNNNGTC	1 cut(s)	604
Eam1105I	GACNNNNNGTC	1 cut(s)	604
Eco47I	GGWCC	1 cut(s)	335
EcoRI	GAATTC	1 cut(s)	104
EcoRII	CCWGG	1 cut(s)	859
Esp3I	CGTCTC	1 cut(s)	71
FaeI	CATG	7 cut(s)	97, 175, 245, 293, 692, 748, 934
FalI	AAGNNNNNCTT	2 cut(s)	106, 138
FatI	CATG	7 cut(s)	93, 171, 241, 289, 688, 744, 930
FbaI	TGATCA	1 cut(s)	829
FblI	GTMKAC	2 cut(s)	378, 538
Fnu4HI	GCNGC	7 cut(s)	30, 33, 36, 39, 42, 295, 512
FokI	GGATG	4 cut(s)	647, 665, 747, 786
Fsp4HI	GCNGC	7 cut(s)	30, 33, 36, 39, 42, 295, 512
FspBI	CTAG	2 cut(s)	356, 920
GlaI	GCGC	1 cut(s)	657
GluI	GCNGC	7 cut(s)	30, 33, 36, 39, 42, 295, 512
HapII	CCGG	4 cut(s)	338, 419, 735, 764
HgaI	GACGC	2 cut(s)	361, 761
HhaI	GCGC	1 cut(s)	658
Hin1I	GRCGYC	1 cut(s)	372
Hin1II	CATG	7 cut(s)	97, 175, 245, 293, 692, 748, 934
Hin6I	GCGC	1 cut(s)	656
HinP1I	GCGC	1 cut(s)	656
HincII	GTYRAC	2 cut(s)	51, 379
HindII	GTYRAC	2 cut(s)	51, 379
HindIII	AAGCTT	1 cut(s)	184
HinfI	GANTC	3 cut(s)	168, 380, 605
HpaI	GTTAAC	1 cut(s)	51
HpaII	CCGG	4 cut(s)	338, 419, 735, 764
HphI	GGTGA	2 cut(s)	875, 881
Hpy166II	GTNNAC	7 cut(s)	51, 225, 335, 379, 539, 545, 742
Hpy188I	TCNGA	5 cut(s)	103, 260, 306, 666, 732
Hpy188III	TCNNGA	2 cut(s)	650, 764
Hpy8I	GTNNAC	7 cut(s)	51, 225, 335, 379, 539, 545, 742
Hpy99I	CGWCG	2 cut(s)	377, 380
HpyAV	CCTTC	2 cut(s)	525, 934
HpyCH4III	ACNGT	3 cut(s)	346, 602, 916
HpyCH4IV	ACGT	3 cut(s)	47, 53, 541
HpyCH4V	TGCA	4 cut(s)	17, 511, 692, 698
HpyF10VI	GCNNNNNNNGC	3 cut(s)	35, 38, 41
HpyF3I	CTNAG	1 cut(s)	452
HpySE526I	ACGT	3 cut(s)	47, 53, 541
Hsp92I	GRCGYC	1 cut(s)	372
Hsp92II	CATG	7 cut(s)	97, 175, 245, 293, 692, 748, 934
HspAI	GCGC	1 cut(s)	656
Kpn2I	TCCGGA	1 cut(s)	763
Ksp22I	TGATCA	1 cut(s)	829
KspAI	GTTAAC	1 cut(s)	51
Kzo9I	GATC	4 cut(s)	301, 481, 493, 829
Lsp1109I	GCAGC	4 cut(s)	22, 41, 306, 523
LweI	GCATC	1 cut(s)	643
MaeI	CTAG	2 cut(s)	356, 920
MaeII	ACGT	3 cut(s)	47, 53, 541
MaeIII	GTNAC	2 cut(s)	198, 596
MalI	GATC	4 cut(s)	303, 483, 495, 831
MboI	GATC	4 cut(s)	301, 481, 493, 829
MboII	GAAGA	7 cut(s)	82, 94, 114, 126, 172, 188, 191
MfeI	CAATTG	1 cut(s)	693
MflI	RGATCY	2 cut(s)	481, 493
MluCI	AATT	9 cut(s)	87, 104, 118, 308, 387, 506, 693, 782, 895
MlyI	GAGTC	2 cut(s)	374, 614
MroI	TCCGGA	1 cut(s)	763
MroXI	GAANNNNTTC	2 cut(s)	118, 121
MseI	TTAA	6 cut(s)	50, 189, 263, 528, 894, 947
MspA1I	CMGCKG	1 cut(s)	32
MspI	CCGG	4 cut(s)	338, 419, 735, 764
MspR9I	CCNGG	1 cut(s)	861
MunI	CAATTG	1 cut(s)	693
MvaI	CCWGG	1 cut(s)	861
MvnI	CGCG	1 cut(s)	755
MwoI	GCNNNNNNNGC	3 cut(s)	35, 38, 41
NdeII	GATC	4 cut(s)	301, 481, 493, 829
NlaIII	CATG	7 cut(s)	97, 175, 245, 293, 692, 748, 934
NlaIV	GGNNCC	2 cut(s)	279, 703
NmuCI	GTSAC	2 cut(s)	198, 596
NspI	RCATGY	3 cut(s)	97, 748, 934
PciI	ACATGT	2 cut(s)	744, 930
PdmI	GAANNNNTTC	2 cut(s)	118, 121
PfeI	GAWTC	1 cut(s)	168
PflMI	CCANNNNNTGG	2 cut(s)	274, 290
PkrI	GCNGC	7 cut(s)	31, 34, 37, 40, 43, 296, 513
PleI	GAGTC	2 cut(s)	374, 613
PpsI	GAGTC	2 cut(s)	374, 613
PscI	ACATGT	2 cut(s)	744, 930
PshBI	ATTAAT	1 cut(s)	894
Psp1406I	AACGTT	1 cut(s)	53
Psp6I	CCWGG	1 cut(s)	859
PspGI	CCWGG	1 cut(s)	859
PspN4I	GGNNCC	2 cut(s)	279, 703
PspPI	GGNCC	1 cut(s)	335
PstNI	CAGNNNCTG	1 cut(s)	35
PsuI	RGATCY	2 cut(s)	481, 493
RsaI	GTAC	7 cut(s)	224, 288, 367, 423, 743, 918, 935
RsaNI	GTAC	7 cut(s)	223, 287, 366, 422, 742, 917, 934
SalI	GTCGAC	1 cut(s)	377
SaqAI	TTAA	6 cut(s)	50, 189, 263, 528, 894, 947
SatI	GCNGC	7 cut(s)	30, 33, 36, 39, 42, 295, 512
Sau3AI	GATC	4 cut(s)	301, 481, 493, 829
Sau96I	GGNCC	1 cut(s)	335
ScaI	AGTACT	1 cut(s)	367
SchI	GAGTC	2 cut(s)	374, 614
ScrFI	CCNGG	1 cut(s)	861
SfaNI	GCATC	1 cut(s)	643
SinI	GGWCC	1 cut(s)	335
SmlI	CTYRAG	1 cut(s)	140
SmoI	CTYRAG	1 cut(s)	140
Sse9I	AATT	9 cut(s)	87, 104, 118, 308, 387, 506, 693, 782, 895
SsiI	CCGC	3 cut(s)	32, 38, 41
SspI	AATATT	1 cut(s)	446
SspMI	CTAG	2 cut(s)	356, 920
StyD4I	CCNGG	1 cut(s)	859
TaaI	ACNGT	3 cut(s)	346, 602, 916
TaiI	ACGT	3 cut(s)	50, 56, 544
TaqI	TCGA	3 cut(s)	216, 378, 612
TasI	AATT	9 cut(s)	87, 104, 118, 308, 387, 506, 693, 782, 895
TatI	WGTACW	5 cut(s)	222, 286, 365, 741, 933
TauI	GCSGC	3 cut(s)	35, 41, 44
TfiI	GAWTC	1 cut(s)	168
Tru1I	TTAA	6 cut(s)	50, 189, 263, 528, 894, 947
Tru9I	TTAA	6 cut(s)	50, 189, 263, 528, 894, 947
TseFI	GTSAC	2 cut(s)	198, 596
TseI	GCWGC	4 cut(s)	29, 35, 294, 511
Tsp45I	GTSAC	2 cut(s)	198, 596
TspDTI	ATGAA	1 cut(s)	97
Van91I	CCANNNNNTGG	2 cut(s)	274, 290
VpaK11BI	GGWCC	1 cut(s)	335
VspI	ATTAAT	1 cut(s)	894
XapI	RAATTY	2 cut(s)	104, 118
XceI	RCATGY	3 cut(s)	97, 748, 934
XmiI	GTMKAC	2 cut(s)	378, 538
XmnI	GAANNNNTTC	2 cut(s)	118, 121
XspI	CTAG	2 cut(s)	356, 920
ZrmI	AGTACT	1 cut(s)	367

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.