Rh2BG643700

RNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0001042
Physical Location & Seq
Forward (+)
86220866 .. 86234321
13456 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG643700.1

Sequence Viewer

Length: 1197 bp
ATGGCGTGGTGTAGGCGGCACTGTTTTGCAATGTTGGAAGGTTTTGCAACCAGAAGAGCAGCGTCCGCGGCGGCTACGTCAACCTTAGCAAGCAACTGGAAGAATGAGACGAAGAAAAGTAGTATGTTTTCAGAATTCATAGGAAGAAATTCTTCTACTTTAGCAACACTTAAGGCAAAGGAGAAAAAGAAGAAAGGAATCATGGAAGAAGAAAGCTTTAAGTATAAGTCACTCTACTTATGTTTCGAGGAGTACACTAACGACAATGCTCATGTTATTCAATCCATCAGATTAAGCCATCTGTTGGCACCACCAGTACATGGCAGCGATAATCTGAAATTACAGAGAGTTGCTTATAGATGTGGACCGGATACCGTTGTTCCCCTACATATGAGTACTGGTGTCGTCGGCTCCAAAATTATTTTCTCTGGTGGCAAGGTTTTTCCTCCTGTACAACCTCCTGTTACTTTTGAATATTCACTAAGCAAAGAAGTTTGTGTGTTTGAGACAGATCCAAGCACAGATCCAAACCCAAAATTGCAGCCTTCCCAAGTTTTTAAGGTTAGTAGACCTGAAACTGTTTTAGTAGAGGTGGATGACAAACTTTATCGCTTCGGTGGTCTATGTGATTGTGAGTCATTCGAGGTATTTGAACCAATACAGGATGAGTGGTTGCCTCTGGATGCGCCTCCTCGGAAGTATCCCTACGGCTTCACTCATGCAATTGCAGGCACCAAAATCCTACTATGGGGCAGAAATCAGACCGGAGTGTACATGTTTGACGCGACCCATCCAGAAAAAGGATGGACAGAATTGGACCCTTGTTTGGGAAGCTATATTCCCTCTATTGATGGTTATGATCAACTATTTATCAAGTTTCATCATGGTGATGGTGAGGGTTTCCTAATGTTCTCCGTTAATTTGGAACAACCTCATACAGTACTAGCCTTCCACATGTCTTATACATGTGATTCCTTGAAACCTATGGAACCTCTGCAGCTGCCAGAATGGCCTCCAAAATTTCATAGTCCAGATCCAGAACTTCATAGTCCAGATCAATGTCTATTTTTTCACCTAGGAGCGCAAAAAAAAACCCACCTGAGTGCCCGTAAACGAGATATGAAGCTGTATCGGACACTGCTCCAACCACAAACTCTAGGTATGTATGAGTTGGTTTACAAAAATCTCGCCAAGTAA

Protein Analysis

398

Amino Acids

45.2

Weight (kDa)

7.22

Isoelectric Point (pI)

38.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 307, 731
AccB7I CCANNNNNTGG 2 cut(s) 304, 320
AccI GTMKAC 1 cut(s) 568
AccII CGCG 2 cut(s) 68, 785
AciI CCGC 4 cut(s) 16, 66, 68, 71
AclWI GGATC 3 cut(s) 506, 518, 1028
AcsI RAATTY 3 cut(s) 134, 148, 1019
AfaI GTAC 6 cut(s) 254, 318, 397, 453, 773, 942
AfiI CCNNNNNNNGG 6 cut(s) 304, 320, 748, 800, 826, 827
AflII CTTAAG 1 cut(s) 170
AflIII ACRYGT 3 cut(s) 774, 954, 965
AgsI TTSAA 4 cut(s) 281, 473, 653, 979
AjuI GAANNNNNNNTTGG 2 cut(s) 407, 439
AleI CACNNNNGTG 1 cut(s) 1101
AluBI AGCT 4 cut(s) 216, 834, 1000, 1126
AluI AGCT 4 cut(s) 216, 834, 1000, 1126
Alw26I GTCTC 2 cut(s) 101, 500
AlwI GGATC 3 cut(s) 506, 518, 1028
AoxI GGCC 1 cut(s) 1010
ApeKI GCWGC 5 cut(s) 59, 324, 541, 997, 1000
ApoI RAATTY 3 cut(s) 134, 148, 1019
Asp700I GAANNNNTTC 2 cut(s) 148, 151
AspA2I CCTAGG 1 cut(s) 1075
AspLEI GCGC 2 cut(s) 688, 1084
AspS9I GGNCC 2 cut(s) 365, 817
AsuHPI GGTGA 3 cut(s) 899, 905, 1064
AvaII GGWCC 2 cut(s) 365, 817
AvrII CCTAGG 1 cut(s) 1075
BaeGI GKGCMC 1 cut(s) 1108
BaeI ACNNNNGTAYC 2 cut(s) 363, 396
BanI GGYRCC 2 cut(s) 307, 731
BarI GAAGNNNNNNTAC 2 cut(s) 689, 721
BbvI GCAGC 5 cut(s) 71, 336, 553, 987, 1009
BccI CCATC 6 cut(s) 293, 306, 798, 798, 845, 884
BceAI ACGGC 1 cut(s) 724
BciVI GTATCC 2 cut(s) 364, 711
BclI TGATCA 1 cut(s) 859
BcoDI GTCTC 2 cut(s) 101, 500
BfaI CTAG 3 cut(s) 944, 1076, 1157
BfmI CTRYAG 1 cut(s) 995
BfrI CTTAAG 1 cut(s) 170
BfuI GTATCC 2 cut(s) 364, 711
BglI GCCNNNNNGGC 1 cut(s) 1009
BisI GCNGC 8 cut(s) 17, 60, 69, 72, 325, 542, 998, 1001
BlnI CCTAGG 1 cut(s) 1075
BlsI GCNGC 8 cut(s) 18, 61, 70, 73, 326, 543, 999, 1002
BmcAI AGTACT 2 cut(s) 397, 942
Bme18I GGWCC 2 cut(s) 365, 817
BmgT120I GGNCC 2 cut(s) 365, 817
BmiI GGNNCC 5 cut(s) 309, 412, 733, 819, 990
BmsI GCATC 1 cut(s) 673
Bpu10I CCTNAGC 1 cut(s) 85
BsaJI CCNNGG 3 cut(s) 66, 692, 1075
BsaWI WCCGGW 2 cut(s) 367, 764
Bsc4I CCNNNNNNNGG 6 cut(s) 304, 320, 748, 800, 826, 827
Bse1I ACTGG 3 cut(s) 101, 314, 403
Bse3DI GCAATG 1 cut(s) 36
BseDI CCNNGG 3 cut(s) 66, 692, 1075
BseGI GGATG 5 cut(s) 601, 670, 688, 790, 809
BseLI CCNNNNNNNGG 6 cut(s) 304, 320, 748, 800, 826, 827
BseMI GCAATG 1 cut(s) 36
BseMII CTCAG 1 cut(s) 1091
BseNI ACTGG 3 cut(s) 101, 314, 403
BseRI GAGGAG 2 cut(s) 263, 681
BseSI GKGCMC 1 cut(s) 1108
BseXI GCAGC 5 cut(s) 71, 336, 553, 987, 1009
Bsh1236I CGCG 2 cut(s) 68, 785
BshFI GGCC 1 cut(s) 1012
BshNI GGYRCC 2 cut(s) 307, 731
BsiSI CCGG 2 cut(s) 368, 765
BslI CCNNNNNNNGG 6 cut(s) 304, 320, 748, 800, 826, 827
BsmAI GTCTC 2 cut(s) 101, 500
BsmBI CGTCTC 1 cut(s) 101
BsnI GGCC 1 cut(s) 1012
Bsp1286I GDGCHC 1 cut(s) 1108
Bsp1407I TGTACA 2 cut(s) 451, 771
Bsp143I GATC 5 cut(s) 511, 523, 859, 1033, 1054
BspACI CCGC 4 cut(s) 16, 66, 68, 71
BspANI GGCC 1 cut(s) 1012
BspCNI CTCAG 1 cut(s) 1092
BspFNI CGCG 2 cut(s) 68, 785
BspLI GGNNCC 5 cut(s) 309, 412, 733, 819, 990
BspMAI CTGCAG 1 cut(s) 999
BspPI GGATC 3 cut(s) 506, 518, 1028
BspQI GCTCTTC 1 cut(s) 49
BspT107I GGYRCC 2 cut(s) 307, 731
BspTI CTTAAG 1 cut(s) 170
BsrDI GCAATG 1 cut(s) 36
BsrGI TGTACA 2 cut(s) 451, 771
BsrI ACTGG 3 cut(s) 101, 314, 403
BssECI CCNNGG 3 cut(s) 66, 692, 1075
BssMI GATC 5 cut(s) 511, 523, 859, 1033, 1054
BssT1I CCWWGG 1 cut(s) 1075
Bst4CI ACNGT 4 cut(s) 23, 376, 580, 940
Bst6I CTCTTC 1 cut(s) 49
BstAFI CTTAAG 1 cut(s) 170
BstAUI TGTACA 2 cut(s) 451, 771
BstC8I GCNNGC 2 cut(s) 91, 730
BstDEI CTNAG 3 cut(s) 85, 482, 1100
BstDSI CCRYGG 1 cut(s) 66
BstF5I GGATG 5 cut(s) 601, 670, 688, 790, 809
BstFNI CGCG 2 cut(s) 68, 785
BstHHI GCGC 2 cut(s) 688, 1084
BstKTI GATC 5 cut(s) 514, 526, 862, 1036, 1057
BstMAI GTCTC 2 cut(s) 101, 500
BstMBI GATC 5 cut(s) 511, 523, 859, 1033, 1054
BstMWI GCNNNNNNNGC 3 cut(s) 65, 68, 1009
BstNSI RCATGY 3 cut(s) 778, 958, 969
BstSFI CTRYAG 1 cut(s) 995
BstSLI GKGCMC 1 cut(s) 1108
BstUI CGCG 2 cut(s) 68, 785
BstV1I GCAGC 5 cut(s) 71, 336, 553, 987, 1009
BstX2I RGATCY 3 cut(s) 511, 523, 1033
BstYI RGATCY 3 cut(s) 511, 523, 1033
BsuI GTATCC 2 cut(s) 364, 711
BsuRI GGCC 1 cut(s) 1012
BtgI CCRYGG 1 cut(s) 66
BtsCI GGATG 5 cut(s) 601, 670, 688, 790, 809
BtsI GCAGTG 1 cut(s) 1136
BtsIMutI CAGTG 2 cut(s) 19, 1136
Cac8I GCNNGC 2 cut(s) 91, 730
CfoI GCGC 2 cut(s) 688, 1084
Cfr13I GGNCC 2 cut(s) 365, 817
Cfr42I CCGCGG 1 cut(s) 69
CseI GACGC 2 cut(s) 51, 791
Csp6I GTAC 6 cut(s) 253, 317, 396, 452, 772, 941
CviAII CATG 8 cut(s) 202, 272, 320, 719, 775, 884, 955, 966
CviQI GTAC 6 cut(s) 253, 317, 396, 452, 772, 941
DdeI CTNAG 3 cut(s) 85, 482, 1100
DpnI GATC 5 cut(s) 513, 525, 861, 1035, 1056
DpnII GATC 5 cut(s) 511, 523, 859, 1033, 1054
Eam1104I CTCTTC 1 cut(s) 49
EarI CTCTTC 1 cut(s) 49
Eco130I CCWWGG 1 cut(s) 1075
Eco47I GGWCC 2 cut(s) 365, 817
EcoRI GAATTC 1 cut(s) 134
EcoT14I CCWWGG 1 cut(s) 1075
ErhI CCWWGG 1 cut(s) 1075
Esp3I CGTCTC 1 cut(s) 101
FaeI CATG 8 cut(s) 205, 275, 323, 722, 778, 887, 958, 969
FalI AAGNNNNNCTT 2 cut(s) 136, 168
FatI CATG 8 cut(s) 201, 271, 319, 718, 774, 883, 954, 965
FauNDI CATATG 1 cut(s) 390
FbaI TGATCA 1 cut(s) 859
FblI GTMKAC 1 cut(s) 568
Fnu4HI GCNGC 8 cut(s) 17, 60, 69, 72, 325, 542, 998, 1001
FokI GGATG 5 cut(s) 608, 677, 695, 777, 816
Fsp4HI GCNGC 8 cut(s) 17, 60, 69, 72, 325, 542, 998, 1001
FspBI CTAG 3 cut(s) 944, 1076, 1157
GlaI GCGC 2 cut(s) 687, 1083
GluI GCNGC 8 cut(s) 17, 60, 69, 72, 325, 542, 998, 1001
HaeIII GGCC 1 cut(s) 1012
HapII CCGG 2 cut(s) 368, 765
HgaI GACGC 2 cut(s) 51, 791
HhaI GCGC 2 cut(s) 688, 1084
Hin1II CATG 8 cut(s) 205, 275, 323, 722, 778, 887, 958, 969
Hin6I GCGC 2 cut(s) 686, 1082
HinP1I GCGC 2 cut(s) 686, 1082
HincII GTYRAC 1 cut(s) 81
HindII GTYRAC 1 cut(s) 81
HindIII AAGCTT 1 cut(s) 214
HinfI GANTC 3 cut(s) 198, 635, 971
HpaII CCGG 2 cut(s) 368, 765
HphI GGTGA 3 cut(s) 899, 905, 1064
Hpy166II GTNNAC 7 cut(s) 81, 255, 365, 569, 772, 1112, 1177
Hpy188I TCNGA 6 cut(s) 133, 290, 336, 696, 762, 1134
Hpy188III TCNNGA 5 cut(s) 680, 794, 1031, 1037, 1052
Hpy8I GTNNAC 7 cut(s) 81, 255, 365, 569, 772, 1112, 1177
Hpy99I CGWCG 1 cut(s) 410
HpyAV CCTTC 3 cut(s) 32, 555, 958
HpyCH4III ACNGT 4 cut(s) 23, 376, 580, 940
HpyCH4IV ACGT 1 cut(s) 77
HpyCH4V TGCA 6 cut(s) 29, 47, 541, 722, 728, 997
HpyF10VI GCNNNNNNNGC 3 cut(s) 65, 68, 1009
HpyF3I CTNAG 3 cut(s) 85, 482, 1100
HpySE526I ACGT 1 cut(s) 77
Hsp92II CATG 8 cut(s) 205, 275, 323, 722, 778, 887, 958, 969
HspAI GCGC 2 cut(s) 686, 1082
Ksp22I TGATCA 1 cut(s) 859
KspI CCGCGG 1 cut(s) 69
Kzo9I GATC 5 cut(s) 511, 523, 859, 1033, 1054
LguI GCTCTTC 1 cut(s) 49
LmnI GCTCC 3 cut(s) 416, 1079, 1146
Lsp1109I GCAGC 5 cut(s) 71, 336, 553, 987, 1009
LweI GCATC 1 cut(s) 673
MaeI CTAG 3 cut(s) 944, 1076, 1157
MaeII ACGT 1 cut(s) 77
MaeIII GTNAC 2 cut(s) 228, 463
MalI GATC 5 cut(s) 513, 525, 861, 1035, 1056
MboI GATC 5 cut(s) 511, 523, 859, 1033, 1054
MboII GAAGA 8 cut(s) 66, 112, 124, 144, 156, 202, 218, 221
MfeI CAATTG 1 cut(s) 723
MflI RGATCY 3 cut(s) 511, 523, 1033
MhlI GDGCHC 1 cut(s) 1108
MluCI AATT 9 cut(s) 134, 148, 338, 417, 536, 723, 812, 919, 1019
MlyI GAGTC 1 cut(s) 644
MmeI TCCRAC 2 cut(s) 15, 1168
MroXI GAANNNNTTC 2 cut(s) 148, 151
MseI TTAA 5 cut(s) 171, 219, 293, 558, 918
MslI CAYNNNNRTG 3 cut(s) 885, 888, 1101
MspA1I CMGCKG 2 cut(s) 68, 1000
MspCI CTTAAG 1 cut(s) 170
MspI CCGG 2 cut(s) 368, 765
MunI CAATTG 1 cut(s) 723
MvnI CGCG 2 cut(s) 68, 785
MwoI GCNNNNNNNGC 3 cut(s) 65, 68, 1009
NdeI CATATG 1 cut(s) 390
NdeII GATC 5 cut(s) 511, 523, 859, 1033, 1054
NlaIII CATG 8 cut(s) 205, 275, 323, 722, 778, 887, 958, 969
NlaIV GGNNCC 5 cut(s) 309, 412, 733, 819, 990
NmuCI GTSAC 1 cut(s) 228
NspI RCATGY 3 cut(s) 778, 958, 969
OliI CACNNNNGTG 1 cut(s) 1101
PciI ACATGT 3 cut(s) 774, 954, 965
PciSI GCTCTTC 1 cut(s) 49
PdmI GAANNNNTTC 2 cut(s) 148, 151
PfeI GAWTC 2 cut(s) 198, 971
PflMI CCANNNNNTGG 2 cut(s) 304, 320
PkrI GCNGC 8 cut(s) 18, 61, 70, 73, 326, 543, 999, 1002
PleI GAGTC 1 cut(s) 643
PpsI GAGTC 1 cut(s) 643
PscI ACATGT 3 cut(s) 774, 954, 965
PspN4I GGNNCC 5 cut(s) 309, 412, 733, 819, 990
PspPI GGNCC 2 cut(s) 365, 817
PstI CTGCAG 1 cut(s) 999
PsuI RGATCY 3 cut(s) 511, 523, 1033
PvuII CAGCTG 1 cut(s) 1000
RsaI GTAC 6 cut(s) 254, 318, 397, 453, 773, 942
RsaNI GTAC 6 cut(s) 253, 317, 396, 452, 772, 941
RseI CAYNNNNRTG 3 cut(s) 885, 888, 1101
SacII CCGCGG 1 cut(s) 69
SapI GCTCTTC 1 cut(s) 49
SaqAI TTAA 5 cut(s) 171, 219, 293, 558, 918
SatI GCNGC 8 cut(s) 17, 60, 69, 72, 325, 542, 998, 1001
Sau3AI GATC 5 cut(s) 511, 523, 859, 1033, 1054
Sau96I GGNCC 2 cut(s) 365, 817
ScaI AGTACT 2 cut(s) 397, 942
SchI GAGTC 1 cut(s) 644
SduI GDGCHC 1 cut(s) 1108
SfaNI GCATC 1 cut(s) 673
SfcI CTRYAG 1 cut(s) 995
Sfr303I CCGCGG 1 cut(s) 69
SgrBI CCGCGG 1 cut(s) 69
SinI GGWCC 2 cut(s) 365, 817
SmiMI CAYNNNNRTG 3 cut(s) 885, 888, 1101
SmlI CTYRAG 1 cut(s) 170
SmoI CTYRAG 1 cut(s) 170
Sse9I AATT 9 cut(s) 134, 148, 338, 417, 536, 723, 812, 919, 1019
SsiI CCGC 4 cut(s) 16, 66, 68, 71
SspI AATATT 1 cut(s) 476
SspMI CTAG 3 cut(s) 944, 1076, 1157
StyI CCWWGG 1 cut(s) 1075
TaaI ACNGT 4 cut(s) 23, 376, 580, 940
TaiI ACGT 1 cut(s) 80
TaqI TCGA 2 cut(s) 246, 642
TasI AATT 9 cut(s) 134, 148, 338, 417, 536, 723, 812, 919, 1019
TatI WGTACW 6 cut(s) 252, 316, 395, 451, 771, 940
TauI GCSGC 3 cut(s) 19, 71, 74
TfiI GAWTC 2 cut(s) 198, 971
Tru1I TTAA 5 cut(s) 171, 219, 293, 558, 918
Tru9I TTAA 5 cut(s) 171, 219, 293, 558, 918
TscAI CASTG 2 cut(s) 26, 1143
TseFI GTSAC 1 cut(s) 228
TseI GCWGC 5 cut(s) 59, 324, 541, 997, 1000
Tsp45I GTSAC 1 cut(s) 228
TspDTI ATGAA 5 cut(s) 127, 869, 1013, 1034, 1136
TspGWI ACGGA 1 cut(s) 904
TspRI CASTG 2 cut(s) 26, 1143
Van91I CCANNNNNTGG 2 cut(s) 304, 320
Vha464I CTTAAG 1 cut(s) 170
VpaK11BI GGWCC 2 cut(s) 365, 817
XapI RAATTY 3 cut(s) 134, 148, 1019
XceI RCATGY 3 cut(s) 778, 958, 969
XcmI CCANNNNNNNNNTGG 1 cut(s) 801
XmaJI CCTAGG 1 cut(s) 1075
XmiI GTMKAC 1 cut(s) 568
XmnI GAANNNNTTC 2 cut(s) 148, 151
XspI CTAG 3 cut(s) 944, 1076, 1157
ZrmI AGTACT 2 cut(s) 397, 942
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.