RLG00000022086

RNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0001042
Physical Location & Seq
Forward (+)
80796580 .. 80798000
1421 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000022086

Sequence Viewer

Length: 1308 bp
ATGGCGTGGTGTAGACGGCGGTGTATTGCGATATTAGGAGATTTTGCAACTAGAAAAACAGCGGCGGGGGCAACGTCAAAGATAGCAAGCAAGTGGGAGAAGGAGACGAAGAAAACTAGCATGTTTTCTGAATTAATCAGAAGAAATTCTGCTACTTTAGCACCACTTATGGTGGAGGAGAAAGACAAGAATGGAACCATGAAAGAAGAAAGATCGAAGAGCAAGTCTCTCTACTTATGTTTTGAGGAGCAGATAACTCGTTTTAATGTTGCTCACGTTATTCAATCTATCGAATTGAGCCACGTGTTGGCTGCACCAACTGTTGGTGATCATGGCTGCGATGAACTTAAGTTAGGTGAAGTTGCTTATAGATTCGGACCGGACACTTATGTTCCCTGCAGGATGAGCAATAGTGTCATCGGCTCCAAAATTATTTTCTCCGGTGGCATGCCCTCCCAAATGTTTAAGACTAGTAGACCCGATCCCTACCTAGTAGAGGTGGCTGGCGAAATATATTGTTTCGGTGGCCCATGTTACTCTGAGTTCTTCGAGGTATTTGACAAGACACATGAAAAATGGTTGCCTCTGGATGTGCCTCCTCAGAGATATCCCTACAGGGACGTCTGCCATGCAATTTTAGGAAACAAAATGTTACTCTGGGTAAAAAATCAGACCGGAGTATTCGGGTTTGACGTCACTCAACCTGAAAAAGGATGGACAGAGTTGGACACTTGTTTGGGAAGCTGCATTCCCTGTGTTAATGGTTATGATCAACTATTTGTCAAGTTGAAGTCTCATCGTGGTGATGGTTTTCTAATGTTCTCCTGTAATTTAGAACAACCTCAGACTGTCAGAGTCTTTCACATTTCGCATGAATGTGATTCTATGAAACCTATGGAACCTCTGCAGCTGCCAAAATTGCCTCATAAATTTCCTGTACCAACACGATGTCAGTTTTTTCATCTAGAAGATAATAAAGTCGGCATTGTTTTCTTCCATGACCGTCGTGAGTATTTTTATGAGGATTATGATTATTTTTCTCCTGGTGATGATGACGACGATGATGATGATGAGGATGATGTGAACGAGCAGGAGCAGGGGGAGGGGGAGGAAGAGGAGGAGGAGGAGGAGGAGGAGGATGTTAGCAGGGTGAGAACTCTTGTCATAATATTTGAATATGAAATTGCGGAGAAATCCATGGACATCAAGTGCAAATTGCTCACCATTCGCTGCCTGGAATACTCTACCCACCCTCCTGAAGAAGGTAGGATCACCGATTCAACCCTTCTTGGCGCTTATGTGATCTGA

Protein Analysis

436

Amino Acids

49.96

Weight (kDa)

4.92

Isoelectric Point (pI)

51.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 624, 696
AccB7I CCANNNNNTGG 2 cut(s) 307, 323
AccI GTMKAC 2 cut(s) 13, 475
AciI CCGC 4 cut(s) 19, 62, 65, 1187
AclWI GGATC 2 cut(s) 476, 1277
AcsI RAATTY 2 cut(s) 145, 929
AcuI CTGAAG 1 cut(s) 1278
AcvI CACGTG 1 cut(s) 304
AcyI GRCGYC 2 cut(s) 621, 693
AfaI GTAC 1 cut(s) 939
AfiI CCNNNNNNNGG 5 cut(s) 307, 323, 496, 710, 1262
AflII CTTAAG 1 cut(s) 347
AflIII ACRYGT 1 cut(s) 303
AgsI TTSAA 4 cut(s) 284, 790, 1175, 1281
AhlI ACTAGT 1 cut(s) 470
AjnI CCWGG 2 cut(s) 1042, 1233
AjuI GAANNNNNNNTTGG 2 cut(s) 419, 451
AluBI AGCT 2 cut(s) 744, 910
AluI AGCT 2 cut(s) 744, 910
Alw26I GTCTC 3 cut(s) 98, 231, 798
AlwI GGATC 2 cut(s) 476, 1277
AoxI GGCC 1 cut(s) 526
ApeKI GCWGC 6 cut(s) 311, 336, 744, 907, 910, 1230
ApoI RAATTY 2 cut(s) 145, 929
ArsI GACNNNNNNTTYG 2 cut(s) 209, 241
AseI ATTAAT 1 cut(s) 134
Asp700I GAANNNNTTC 1 cut(s) 145
AspLEI GCGC 1 cut(s) 1295
AspS9I GGNCC 2 cut(s) 377, 527
AsuHPI GGTGA 7 cut(s) 338, 368, 815, 1058, 1162, 1213, 1264
AvaII GGWCC 1 cut(s) 377
BbrPI CACGTG 1 cut(s) 304
BbvI GCAGC 6 cut(s) 298, 323, 731, 897, 919, 1217
BccI CCATC 2 cut(s) 708, 800
BceAI ACGGC 1 cut(s) 32
BcgI CGANNNNNNTGC 2 cut(s) 239, 273
BciT130I CCWGG 2 cut(s) 1044, 1235
BclI TGATCA 2 cut(s) 328, 769
BcoDI GTCTC 3 cut(s) 98, 231, 798
BcuI ACTAGT 1 cut(s) 470
BfaI CTAG 5 cut(s) 51, 117, 471, 491, 965
BfmI CTRYAG 3 cut(s) 397, 613, 905
BfoI RGCGCY 1 cut(s) 1296
BfrI CTTAAG 1 cut(s) 347
BisI GCNGC 7 cut(s) 63, 312, 337, 745, 908, 911, 1231
BlsI GCNGC 7 cut(s) 64, 313, 338, 746, 909, 912, 1232
Bme1390I CCNGG 2 cut(s) 1044, 1235
Bme18I GGWCC 1 cut(s) 377
BmgT120I GGNCC 2 cut(s) 377, 527
BmiI GGNNCC 3 cut(s) 196, 424, 900
BmrFI CCNGG 2 cut(s) 1044, 1235
BplI GAGNNNNNCTC 2 cut(s) 211, 243
BsaAI YACGTR 1 cut(s) 304
BsaHI GRCGYC 2 cut(s) 621, 693
BsaJI CCNNGG 1 cut(s) 1197
BsaWI WCCGGW 3 cut(s) 379, 440, 674
BsaXI ACNNNNNCTCC 2 cut(s) 1237, 1267
Bsc4I CCNNNNNNNGG 5 cut(s) 307, 323, 496, 710, 1262
BseBI CCWGG 2 cut(s) 1044, 1235
BseDI CCNNGG 1 cut(s) 1197
BseGI GGATG 5 cut(s) 408, 595, 719, 1081, 1144
BseLI CCNNNNNNNGG 5 cut(s) 307, 323, 496, 710, 1262
BseMII CTCAG 3 cut(s) 531, 614, 857
BseXI GCAGC 6 cut(s) 298, 323, 731, 897, 919, 1217
BsgI GTGCAG 1 cut(s) 297
BshFI GGCC 1 cut(s) 528
BsiSI CCGG 3 cut(s) 380, 441, 675
BslFI GGGAC 1 cut(s) 632
BslI CCNNNNNNNGG 5 cut(s) 307, 323, 496, 710, 1262
BsmAI GTCTC 3 cut(s) 98, 231, 798
BsmBI CGTCTC 1 cut(s) 98
BsmFI GGGAC 1 cut(s) 632
BsmI GAATGC 1 cut(s) 747
BsnI GGCC 1 cut(s) 528
Bsp143I GATC 6 cut(s) 212, 328, 481, 769, 1269, 1302
Bsp19I CCATGG 1 cut(s) 1197
BspACI CCGC 4 cut(s) 19, 62, 65, 1187
BspANI GGCC 1 cut(s) 528
BspCNI CTCAG 3 cut(s) 532, 613, 856
BspLI GGNNCC 3 cut(s) 196, 424, 900
BspMAI CTGCAG 2 cut(s) 401, 909
BspPI GGATC 2 cut(s) 476, 1277
BspQI GCTCTTC 1 cut(s) 212
BspTI CTTAAG 1 cut(s) 347
BssECI CCNNGG 1 cut(s) 1197
BssMI GATC 6 cut(s) 212, 328, 481, 769, 1269, 1302
BssNI GRCGYC 2 cut(s) 621, 693
BssT1I CCWWGG 1 cut(s) 1197
Bst2UI CCWGG 2 cut(s) 1044, 1235
Bst4CI ACNGT 3 cut(s) 322, 850, 1004
Bst6I CTCTTC 2 cut(s) 212, 1107
BstACI GRCGYC 2 cut(s) 621, 693
BstAFI CTTAAG 1 cut(s) 347
BstBAI YACGTR 1 cut(s) 304
BstC8I GCNNGC 3 cut(s) 88, 449, 505
BstDEI CTNAG 3 cut(s) 540, 600, 843
BstDSI CCRYGG 1 cut(s) 1197
BstENI CCTNNNNNAGG 3 cut(s) 494, 708, 1260
BstF5I GGATG 5 cut(s) 408, 595, 719, 1081, 1144
BstH2I RGCGCY 1 cut(s) 1296
BstHHI GCGC 1 cut(s) 1295
BstKTI GATC 6 cut(s) 215, 331, 484, 772, 1272, 1305
BstMAI GTCTC 3 cut(s) 98, 231, 798
BstMBI GATC 6 cut(s) 212, 328, 481, 769, 1269, 1302
BstMWI GCNNNNNNNGC 4 cut(s) 68, 158, 405, 919
BstNI CCWGG 2 cut(s) 1044, 1235
BstNSI RCATGY 2 cut(s) 124, 451
BstSCI CCNGG 2 cut(s) 1042, 1233
BstSFI CTRYAG 3 cut(s) 397, 613, 905
BstV1I GCAGC 6 cut(s) 298, 323, 731, 897, 919, 1217
BsuRI GGCC 1 cut(s) 528
BtgI CCRYGG 1 cut(s) 1197
BtgZI GCGATG 1 cut(s) 354
BtsCI GGATG 5 cut(s) 408, 595, 719, 1081, 1144
Cac8I GCNNGC 3 cut(s) 88, 449, 505
CfoI GCGC 1 cut(s) 1295
Cfr13I GGNCC 2 cut(s) 377, 527
CpoI CGGWCCG 1 cut(s) 377
Csp6I GTAC 1 cut(s) 938
CspI CGGWCCG 1 cut(s) 377
CviJI RGCY 8 cut(s) 300, 311, 336, 423, 503, 528, 744, 910
CviKI_1 RGCY 8 cut(s) 300, 311, 336, 423, 503, 528, 744, 910
CviQI GTAC 1 cut(s) 938
DdeI CTNAG 3 cut(s) 540, 600, 843
DpnI GATC 6 cut(s) 214, 330, 483, 771, 1271, 1304
DpnII GATC 6 cut(s) 212, 328, 481, 769, 1269, 1302
Eam1104I CTCTTC 2 cut(s) 212, 1107
EarI CTCTTC 2 cut(s) 212, 1107
Eco130I CCWWGG 1 cut(s) 1197
Eco32I GATATC 1 cut(s) 608
Eco47I GGWCC 1 cut(s) 377
Eco57I CTGAAG 1 cut(s) 1278
Eco72I CACGTG 1 cut(s) 304
EcoNI CCTNNNNNAGG 3 cut(s) 494, 708, 1260
EcoRII CCWGG 2 cut(s) 1042, 1233
EcoRV GATATC 1 cut(s) 608
EcoT14I CCWWGG 1 cut(s) 1197
ErhI CCWWGG 1 cut(s) 1197
Esp3I CGTCTC 1 cut(s) 98
FaqI GGGAC 1 cut(s) 632
FauI CCCGC 1 cut(s) 58
FbaI TGATCA 2 cut(s) 328, 769
FblI GTMKAC 2 cut(s) 13, 475
Fnu4HI GCNGC 7 cut(s) 63, 312, 337, 745, 908, 911, 1231
FokI GGATG 5 cut(s) 415, 602, 726, 1088, 1151
Fsp4HI GCNGC 7 cut(s) 63, 312, 337, 745, 908, 911, 1231
FspBI CTAG 5 cut(s) 51, 117, 471, 491, 965
GlaI GCGC 1 cut(s) 1294
GluI GCNGC 7 cut(s) 63, 312, 337, 745, 908, 911, 1231
HaeII RGCGCY 1 cut(s) 1296
HaeIII GGCC 1 cut(s) 528
HapII CCGG 3 cut(s) 380, 441, 675
HhaI GCGC 1 cut(s) 1295
Hin1I GRCGYC 2 cut(s) 621, 693
Hin6I GCGC 1 cut(s) 1293
HinP1I GCGC 1 cut(s) 1293
HinfI GANTC 4 cut(s) 372, 855, 881, 1277
HpaII CCGG 3 cut(s) 380, 441, 675
HphI GGTGA 7 cut(s) 338, 368, 815, 1058, 1162, 1213, 1264
Hpy166II GTNNAC 3 cut(s) 14, 476, 1084
Hpy188I TCNGA 9 cut(s) 130, 140, 377, 541, 603, 672, 846, 854, 1307
Hpy188III TCNNGA 4 cut(s) 587, 965, 1007, 1256
Hpy8I GTNNAC 3 cut(s) 14, 476, 1084
Hpy99I CGWCG 2 cut(s) 1008, 1061
HpyAV CCTTC 3 cut(s) 94, 1256, 1295
HpyCH4III ACNGT 3 cut(s) 322, 850, 1004
HpyCH4IV ACGT 5 cut(s) 74, 276, 303, 621, 693
HpyCH4V TGCA 7 cut(s) 47, 314, 399, 632, 747, 907, 1212
HpyF10VI GCNNNNNNNGC 4 cut(s) 68, 158, 405, 919
HpyF3I CTNAG 3 cut(s) 540, 600, 843
HpySE526I ACGT 5 cut(s) 74, 276, 303, 621, 693
Hsp92I GRCGYC 2 cut(s) 621, 693
HspAI GCGC 1 cut(s) 1293
Ksp22I TGATCA 2 cut(s) 328, 769
Kzo9I GATC 6 cut(s) 212, 328, 481, 769, 1269, 1302
LguI GCTCTTC 1 cut(s) 212
LmnI GCTCC 3 cut(s) 247, 428, 1093
Lsp1109I GCAGC 6 cut(s) 298, 323, 731, 897, 919, 1217
MaeI CTAG 5 cut(s) 51, 117, 471, 491, 965
MaeII ACGT 5 cut(s) 74, 276, 303, 621, 693
MaeIII GTNAC 3 cut(s) 533, 651, 694
MalI GATC 6 cut(s) 214, 330, 483, 771, 1271, 1304
MboI GATC 6 cut(s) 212, 328, 481, 769, 1269, 1302
MboII GAAGA 9 cut(s) 121, 153, 218, 229, 538, 980, 985, 1124, 1271
MlyI GAGTC 1 cut(s) 864
MmeI TCCRAC 1 cut(s) 705
MroXI GAANNNNTTC 1 cut(s) 145
MseI TTAA 5 cut(s) 134, 264, 348, 465, 759
MslI CAYNNNNRTG 2 cut(s) 801, 876
MspA1I CMGCKG 2 cut(s) 62, 910
MspCI CTTAAG 1 cut(s) 347
MspI CCGG 3 cut(s) 380, 441, 675
MspR9I CCNGG 2 cut(s) 1044, 1235
Mva1269I GAATGC 1 cut(s) 747
MvaI CCWGG 2 cut(s) 1044, 1235
MwoI GCNNNNNNNGC 4 cut(s) 68, 158, 405, 919
NcoI CCATGG 1 cut(s) 1197
NdeII GATC 6 cut(s) 212, 328, 481, 769, 1269, 1302
NlaIV GGNNCC 3 cut(s) 196, 424, 900
NmuCI GTSAC 1 cut(s) 694
NspI RCATGY 2 cut(s) 124, 451
PaeI GCATGC 1 cut(s) 451
PciSI GCTCTTC 1 cut(s) 212
PcsI WCGNNNNNNNCGW 1 cut(s) 690
PctI GAATGC 1 cut(s) 747
PdmI GAANNNNTTC 1 cut(s) 145
PfeI GAWTC 3 cut(s) 372, 881, 1277
PflMI CCANNNNNTGG 2 cut(s) 307, 323
PkrI GCNGC 7 cut(s) 64, 313, 338, 746, 909, 912, 1232
PleI GAGTC 1 cut(s) 863
PmaCI CACGTG 1 cut(s) 304
PmlI CACGTG 1 cut(s) 304
PpsI GAGTC 1 cut(s) 863
Ppu21I YACGTR 1 cut(s) 304
PshBI ATTAAT 1 cut(s) 134
Psp6I CCWGG 2 cut(s) 1042, 1233
PspCI CACGTG 1 cut(s) 304
PspGI CCWGG 2 cut(s) 1042, 1233
PspN4I GGNNCC 3 cut(s) 196, 424, 900
PspPI GGNCC 2 cut(s) 377, 527
PstI CTGCAG 2 cut(s) 401, 909
PvuII CAGCTG 1 cut(s) 910
RsaI GTAC 1 cut(s) 939
RsaNI GTAC 1 cut(s) 938
RseI CAYNNNNRTG 2 cut(s) 801, 876
Rsr2I CGGWCCG 1 cut(s) 377
RsrII CGGWCCG 1 cut(s) 377
SapI GCTCTTC 1 cut(s) 212
SaqAI TTAA 5 cut(s) 134, 264, 348, 465, 759
SatI GCNGC 7 cut(s) 63, 312, 337, 745, 908, 911, 1231
Sau3AI GATC 6 cut(s) 212, 328, 481, 769, 1269, 1302
Sau96I GGNCC 2 cut(s) 377, 527
SbfI CCTGCAGG 1 cut(s) 401
SchI GAGTC 1 cut(s) 864
ScrFI CCNGG 2 cut(s) 1044, 1235
SdaI CCTGCAGG 1 cut(s) 401
SfcI CTRYAG 3 cut(s) 397, 613, 905
SinI GGWCC 1 cut(s) 377
SmiMI CAYNNNNRTG 2 cut(s) 801, 876
SmlI CTYRAG 1 cut(s) 347
SmoI CTYRAG 1 cut(s) 347
SpeI ACTAGT 1 cut(s) 470
SphI GCATGC 1 cut(s) 451
Sse8387I CCTGCAGG 1 cut(s) 401
SsiI CCGC 4 cut(s) 19, 62, 65, 1187
SspI AATATT 1 cut(s) 1170
SspMI CTAG 5 cut(s) 51, 117, 471, 491, 965
StyD4I CCNGG 2 cut(s) 1042, 1233
StyI CCWWGG 1 cut(s) 1197
TaaI ACNGT 3 cut(s) 322, 850, 1004
TaiI ACGT 5 cut(s) 77, 279, 306, 624, 696
TaqI TCGA 3 cut(s) 215, 291, 549
TauI GCSGC 1 cut(s) 65
TfiI GAWTC 3 cut(s) 372, 881, 1277
Tru1I TTAA 5 cut(s) 134, 264, 348, 465, 759
Tru9I TTAA 5 cut(s) 134, 264, 348, 465, 759
TseFI GTSAC 1 cut(s) 694
TseI GCWGC 6 cut(s) 311, 336, 744, 907, 910, 1230
Tsp45I GTSAC 1 cut(s) 694
TspDTI ATGAA 7 cut(s) 215, 357, 585, 888, 902, 950, 1194
Van91I CCANNNNNTGG 2 cut(s) 307, 323
Vha464I CTTAAG 1 cut(s) 347
VpaK11BI GGWCC 1 cut(s) 377
VspI ATTAAT 1 cut(s) 134
XagI CCTNNNNNAGG 3 cut(s) 494, 708, 1260
XapI RAATTY 2 cut(s) 145, 929
XbaI TCTAGA 1 cut(s) 964
XceI RCATGY 2 cut(s) 124, 451
XcmI CCANNNNNNNNNTGG 1 cut(s) 1231
XmiI GTMKAC 2 cut(s) 13, 475
XmnI GAANNNNTTC 1 cut(s) 145
XspI CTAG 5 cut(s) 51, 117, 471, 491, 965
ZraI GACGTC 2 cut(s) 622, 694
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.