Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0001042

Physical Location & Seq

Genomic Coordinates Forward (+)

88525389 .. 88532381

Gene Structure 6993 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG658500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGATGAGCAATAGTGTCATCGGTTCCAAAATTATTTTCTCCGGTGGCGTGGTTTTTAACAGAAATGAAAGCGATATTAATCGAATGCCCGAGATGATTTTAAGTAAAGAAGTTTGTGCGTTTGAGACAGATCCAAGCGTAGATCTGAACCCGACATTGCAGCCCTCCCAAGCATTTAAGACTAGTAGACCCGATCCCTTCCTAGTAGAGGTAGCCGGCAAACTATATTGTTTCGGTGGCCCATGTTACTCCGAGTCCTTCGAGGTATTTGACTTGACATATGAAAAATGGTTGCCTCTGGATGTGCCTCCTCAGAGATATCCCTACAGGGACATCTGTCATGCAATTTTAGGAAACAAAATGTTACTCTGGGTAAAAAATCAGACCGGAGTATTCGGGTTTGACGTCACTCAACCTGAAAAAGGATGGACAGAGTTGGACTCTTGTTTGGGAAGCTGCATTCCCAATTTTAATAGTTATGGTCAACTATTTGTCAAGTTGAAGTCTCATCGTGGTGATGGTTTTCTAATGTTCTCCTGTAATTTAGAACAACCTCAGACTGTTAGAGTCTTTCAAATTTCACATGAATGTGATTCTATGAAACCTATGGAACCTCTGCAGCTGCCAAAATTGCCTCATCAATTTCCTGTGATCCGGACTCCTGTATTGCCTTCTGTGGCTAGAAACTTGTTTGGAAATGGTAATAAGAGTCGCCGACCTGTCCTCCTCAAACCTATTGTGGAGTCGGCCCATAGTGATGAAGGGTCCAGTAAGGATAATGAGAAGCTAGCGCTGGTCTCAGTGGAAGATGGGAGGAATGCCAAGAGGGAAAGACCTGCTTCCCCATTTTCGTCCCCAAAAAAATTGAAAATCTTCTTTGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00020 ko00190 ko01100 ko01110 ko01120 ko01130 ko01200 ko03015 ko03040 ko04714 ko04932 ko05010 ko05012 ko05016 map00020 map00190 map01100 map01110 map01120 map01130 map01200 map03015 map03040 map04714 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

RRM_1

Protein Analysis

294

Amino Acids

33.13

Weight (kDa)

7.55

Isoelectric Point (pI)

51.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001042)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g43023 FvH4_4g00821 FvH4_6g46861 FvH4_6g50642 FvH4_6g50762 FvH4_6g50763
rosa_chinensis	RchiOBHm_Chr2g0172011
rosa_laevigata	RLG00000019866 RLG00000021935 RLG00000021943 RLG00000022032 RLG00000022034 RLG00000022036 RLG00000022038 RLG00000022040 RLG00000022042 RLG00000022044 RLG00000022046 RLG00000022049 RLG00000022051 RLG00000022068 RLG00000022070 RLG00000022080 RLG00000022083 RLG00000022086 RLG00000034562
rosa_multiflora	Rmu_sc0008262.1_g000002 Rmu_sc0012445.1_g000001 Rmu_sc0012468.1_g000010 Rmu_sc0036915.1_g000001 Rmu_ssc0000252.1_g000031 Rmu_ssc0000252.1_g000036 Rmu_ssc0000252.1_g000040
rosa_roxburghii	Rroxscaffold_2G00080270 Rroxscaffold_2G00080490
rosa_rugosa	Rorug02G0547700 Rorug02G0555600 Rorug02G0555600 Rorug02G0555700 Rorug02G0556100
rosa_samantha	Rh2BG643700 Rh2BG644000 Rh2BG644100 Rh2BG644500 Rh2BG644600 Rh2BG645800 Rh2CG610600 Rh2CG610800 Rh2CG611200 Rh2CG611500 Rh2CG611700 Rh2CG612000 Rh2DG658500 Rh2DG658800 Rh2DG658900 Rh2DG659100 Rh2DG659400 Rh2DG659700 Rh2DG660000 Rh4BG019700 Rh5BG331700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	408
Acc36I	ACCTGC	1 cut(s)	844
AccI	GTMKAC	1 cut(s)	187
AccIII	TCCGGA	1 cut(s)	654
AclWI	GGATC	3 cut(s)	125, 188, 646
AcsI	RAATTY	1 cut(s)	576
AcyI	GRCGYC	1 cut(s)	405
AfeI	AGCGCT	1 cut(s)	792
AfiI	CCNNNNNNNGG	2 cut(s)	208, 422
AgsI	TTSAA	3 cut(s)	502, 575, 868
AhlI	ACTAGT	1 cut(s)	182
AjuI	GAANNNNNNNTTGG	2 cut(s)	20, 52
AluBI	AGCT	3 cut(s)	456, 622, 787
AluI	AGCT	3 cut(s)	456, 622, 787
Alw26I	GTCTC	3 cut(s)	119, 510, 802
AlwI	GGATC	3 cut(s)	125, 188, 646
Ama87I	CYCGRG	1 cut(s)	89
Aor13HI	TCCGGA	1 cut(s)	654
Aor51HI	AGCGCT	1 cut(s)	792
AoxI	GGCC	2 cut(s)	238, 747
ApeKI	GCWGC	4 cut(s)	160, 456, 619, 622
ApoI	RAATTY	1 cut(s)	576
AseI	ATTAAT	1 cut(s)	78
Asp700I	GAANNNNTTC	1 cut(s)	872
AspLEI	GCGC	1 cut(s)	793
AspS9I	GGNCC	3 cut(s)	239, 748, 765
AsuHPI	GGTGA	1 cut(s)	527
AsuNHI	GCTAGC	1 cut(s)	787
AvaI	CYCGRG	1 cut(s)	89
AvaII	GGWCC	1 cut(s)	765
BbvI	GCAGC	4 cut(s)	172, 443, 609, 631
BccI	CCATC	3 cut(s)	420, 512, 803
BcoDI	GTCTC	3 cut(s)	119, 510, 802
BcuI	ACTAGT	1 cut(s)	182
BfaI	CTAG	4 cut(s)	183, 203, 681, 788
BfmI	CTRYAG	2 cut(s)	325, 617
BfoI	RGCGCY	1 cut(s)	794
BfuAI	ACCTGC	1 cut(s)	844
BglII	AGATCT	1 cut(s)	142
BisI	GCNGC	4 cut(s)	161, 457, 620, 623
BlsI	GCNGC	4 cut(s)	162, 458, 621, 624
Bme18I	GGWCC	1 cut(s)	765
BmeT110I	CYCGRG	1 cut(s)	89
BmgT120I	GGNCC	3 cut(s)	239, 748, 765
BmiI	GGNNCC	3 cut(s)	25, 612, 766
BmtI	GCTAGC	1 cut(s)	791
BoxI	GACNNNNGTC	1 cut(s)	336
BplI	GAGNNNNNCTC	2 cut(s)	425, 457
BsaBI	GATNNNNATC	1 cut(s)	78
BsaHI	GRCGYC	1 cut(s)	405
BsaI	GGTCTC	1 cut(s)	802
BsaWI	WCCGGW	3 cut(s)	41, 386, 654
BsaXI	ACNNNNNCTCC	2 cut(s)	708, 738
Bsc4I	CCNNNNNNNGG	2 cut(s)	208, 422
Bse118I	RCCGGY	1 cut(s)	215
Bse1I	ACTGG	1 cut(s)	768
Bse3DI	GCAATG	1 cut(s)	155
Bse8I	GATNNNNATC	1 cut(s)	78
BseAI	TCCGGA	1 cut(s)	654
BseGI	GGATG	2 cut(s)	307, 431
BseJI	GATNNNNATC	1 cut(s)	78
BseLI	CCNNNNNNNGG	2 cut(s)	208, 422
BseMI	GCAATG	1 cut(s)	155
BseMII	CTCAG	3 cut(s)	326, 569, 813
BseNI	ACTGG	1 cut(s)	768
BseRI	GAGGAG	2 cut(s)	300, 716
BseXI	GCAGC	4 cut(s)	172, 443, 609, 631
BshFI	GGCC	2 cut(s)	240, 749
BsiHKCI	CYCGRG	1 cut(s)	89
BsiSI	CCGG	4 cut(s)	42, 216, 387, 655
BslFI	GGGAC	2 cut(s)	344, 838
BslI	CCNNNNNNNGG	2 cut(s)	208, 422
BsmAI	GTCTC	3 cut(s)	119, 510, 802
BsmFI	GGGAC	2 cut(s)	344, 838
BsmI	GAATGC	3 cut(s)	90, 459, 823
BsnI	GGCC	2 cut(s)	240, 749
Bso31I	GGTCTC	1 cut(s)	802
BsoBI	CYCGRG	1 cut(s)	89
Bsp13I	TCCGGA	1 cut(s)	654
Bsp143I	GATC	4 cut(s)	130, 142, 193, 651
BspANI	GGCC	2 cut(s)	240, 749
BspCNI	CTCAG	3 cut(s)	325, 568, 812
BspEI	TCCGGA	1 cut(s)	654
BspLI	GGNNCC	3 cut(s)	25, 612, 766
BspMAI	CTGCAG	1 cut(s)	621
BspMI	ACCTGC	1 cut(s)	844
BspOI	GCTAGC	1 cut(s)	791
BspPI	GGATC	3 cut(s)	125, 188, 646
BspTNI	GGTCTC	1 cut(s)	802
BsrDI	GCAATG	1 cut(s)	155
BsrFI	RCCGGY	1 cut(s)	215
BsrI	ACTGG	1 cut(s)	768
BssAI	RCCGGY	1 cut(s)	215
BssMI	GATC	4 cut(s)	130, 142, 193, 651
BssNI	GRCGYC	1 cut(s)	405
Bst4CI	ACNGT	1 cut(s)	562
BstACI	GRCGYC	1 cut(s)	405
BstC8I	GCNNGC	2 cut(s)	217, 789
BstDEI	CTNAG	3 cut(s)	312, 555, 799
BstENI	CCTNNNNNAGG	2 cut(s)	206, 420
BstF5I	GGATG	2 cut(s)	307, 431
BstH2I	RGCGCY	1 cut(s)	794
BstHHI	GCGC	1 cut(s)	793
BstKTI	GATC	4 cut(s)	133, 145, 196, 654
BstMAI	GTCTC	3 cut(s)	119, 510, 802
BstMBI	GATC	4 cut(s)	130, 142, 193, 651
BstMWI	GCNNNNNNNGC	1 cut(s)	631
BstPAI	GACNNNNGTC	1 cut(s)	336
BstSFI	CTRYAG	2 cut(s)	325, 617
BstV1I	GCAGC	4 cut(s)	172, 443, 609, 631
BstX2I	RGATCY	2 cut(s)	130, 142
BstYI	RGATCY	2 cut(s)	130, 142
BsuRI	GGCC	2 cut(s)	240, 749
BtsCI	GGATG	2 cut(s)	307, 431
BtsIMutI	CAGTG	1 cut(s)	807
BveI	ACCTGC	1 cut(s)	844
Cac8I	GCNNGC	2 cut(s)	217, 789
CfoI	GCGC	1 cut(s)	793
Cfr10I	RCCGGY	1 cut(s)	215
Cfr13I	GGNCC	3 cut(s)	239, 748, 765
CviAII	CATG	3 cut(s)	243, 341, 584
CviJI	RGCY	8 cut(s)	163, 215, 240, 456, 622, 680, 749, 787
CviKI_1	RGCY	8 cut(s)	163, 215, 240, 456, 622, 680, 749, 787
DdeI	CTNAG	3 cut(s)	312, 555, 799
DpnI	GATC	4 cut(s)	132, 144, 195, 653
DpnII	GATC	4 cut(s)	130, 142, 193, 651
Eco31I	GGTCTC	1 cut(s)	802
Eco32I	GATATC	1 cut(s)	320
Eco47I	GGWCC	1 cut(s)	765
Eco47III	AGCGCT	1 cut(s)	792
Eco88I	CYCGRG	1 cut(s)	89
EcoNI	CCTNNNNNAGG	2 cut(s)	206, 420
EcoRV	GATATC	1 cut(s)	320
FaeI	CATG	3 cut(s)	246, 344, 587
FalI	AAGNNNNNCTT	2 cut(s)	823, 855
FaqI	GGGAC	2 cut(s)	344, 838
FatI	CATG	3 cut(s)	242, 340, 583
FauNDI	CATATG	1 cut(s)	280
FblI	GTMKAC	1 cut(s)	187
Fnu4HI	GCNGC	4 cut(s)	161, 457, 620, 623
FokI	GGATG	2 cut(s)	314, 438
Fsp4HI	GCNGC	4 cut(s)	161, 457, 620, 623
FspBI	CTAG	4 cut(s)	183, 203, 681, 788
GlaI	GCGC	1 cut(s)	792
GluI	GCNGC	4 cut(s)	161, 457, 620, 623
HaeII	RGCGCY	1 cut(s)	794
HaeIII	GGCC	2 cut(s)	240, 749
HapII	CCGG	4 cut(s)	42, 216, 387, 655
HhaI	GCGC	1 cut(s)	793
Hin1I	GRCGYC	1 cut(s)	405
Hin1II	CATG	3 cut(s)	246, 344, 587
Hin6I	GCGC	1 cut(s)	791
HinP1I	GCGC	1 cut(s)	791
HincII	GTYRAC	1 cut(s)	485
HindII	GTYRAC	1 cut(s)	485
HinfI	GANTC	7 cut(s)	254, 440, 567, 593, 658, 709, 743
HpaII	CCGG	4 cut(s)	42, 216, 387, 655
HphI	GGTGA	1 cut(s)	527
Hpy166II	GTNNAC	2 cut(s)	188, 485
Hpy188I	TCNGA	5 cut(s)	147, 253, 315, 384, 558
Hpy188III	TCNNGA	2 cut(s)	299, 655
Hpy8I	GTNNAC	2 cut(s)	188, 485
HpyAV	CCTTC	4 cut(s)	208, 268, 681, 755
HpyCH4III	ACNGT	1 cut(s)	562
HpyCH4IV	ACGT	1 cut(s)	405
HpyCH4V	TGCA	4 cut(s)	160, 344, 459, 619
HpyF10VI	GCNNNNNNNGC	1 cut(s)	631
HpyF3I	CTNAG	3 cut(s)	312, 555, 799
HpySE526I	ACGT	1 cut(s)	405
Hsp92I	GRCGYC	1 cut(s)	405
Hsp92II	CATG	3 cut(s)	246, 344, 587
HspAI	GCGC	1 cut(s)	791
Kpn2I	TCCGGA	1 cut(s)	654
KroI	GCCGGC	1 cut(s)	215
KroNI	GCCGGC	1 cut(s)	217
Kzo9I	GATC	4 cut(s)	130, 142, 193, 651
Lsp1109I	GCAGC	4 cut(s)	172, 443, 609, 631
MaeI	CTAG	4 cut(s)	183, 203, 681, 788
MaeII	ACGT	1 cut(s)	405
MaeIII	GTNAC	3 cut(s)	245, 363, 406
MalI	GATC	4 cut(s)	132, 144, 195, 653
MboI	GATC	4 cut(s)	130, 142, 193, 651
MboII	GAAGA	2 cut(s)	818, 865
MflI	RGATCY	2 cut(s)	130, 142
MluCI	AATT	8 cut(s)	30, 345, 466, 541, 576, 629, 641, 863
MlyI	GAGTC	6 cut(s)	263, 434, 576, 652, 718, 752
MmeI	TCCRAC	1 cut(s)	417
MroI	TCCGGA	1 cut(s)	654
MroNI	GCCGGC	1 cut(s)	215
MroXI	GAANNNNTTC	1 cut(s)	872
MseI	TTAA	5 cut(s)	57, 78, 101, 177, 471
MslI	CAYNNNNRTG	4 cut(s)	513, 586, 588, 756
MspA1I	CMGCKG	1 cut(s)	622
MspI	CCGG	4 cut(s)	42, 216, 387, 655
Mva1269I	GAATGC	3 cut(s)	90, 459, 823
MwoI	GCNNNNNNNGC	1 cut(s)	631
NaeI	GCCGGC	1 cut(s)	217
NdeI	CATATG	1 cut(s)	280
NdeII	GATC	4 cut(s)	130, 142, 193, 651
NgoMIV	GCCGGC	1 cut(s)	215
NheI	GCTAGC	1 cut(s)	787
NlaIII	CATG	3 cut(s)	246, 344, 587
NlaIV	GGNNCC	3 cut(s)	25, 612, 766
NmuCI	GTSAC	1 cut(s)	406
PcsI	WCGNNNNNNNCGW	1 cut(s)	402
PctI	GAATGC	3 cut(s)	90, 459, 823
PdiI	GCCGGC	1 cut(s)	217
PdmI	GAANNNNTTC	1 cut(s)	872
PfeI	GAWTC	1 cut(s)	593
PkrI	GCNGC	4 cut(s)	162, 458, 621, 624
PleI	GAGTC	6 cut(s)	262, 434, 575, 652, 717, 751
PpsI	GAGTC	6 cut(s)	262, 434, 575, 652, 717, 751
PshAI	GACNNNNGTC	1 cut(s)	336
PshBI	ATTAAT	1 cut(s)	78
PspN4I	GGNNCC	3 cut(s)	25, 612, 766
PspPI	GGNCC	3 cut(s)	239, 748, 765
PstI	CTGCAG	1 cut(s)	621
PsuI	RGATCY	2 cut(s)	130, 142
PvuII	CAGCTG	1 cut(s)	622
RseI	CAYNNNNRTG	4 cut(s)	513, 586, 588, 756
SaqAI	TTAA	5 cut(s)	57, 78, 101, 177, 471
SatI	GCNGC	4 cut(s)	161, 457, 620, 623
Sau3AI	GATC	4 cut(s)	130, 142, 193, 651
Sau96I	GGNCC	3 cut(s)	239, 748, 765
SchI	GAGTC	6 cut(s)	263, 434, 576, 652, 718, 752
SfcI	CTRYAG	2 cut(s)	325, 617
SinI	GGWCC	1 cut(s)	765
SmiMI	CAYNNNNRTG	4 cut(s)	513, 586, 588, 756
SpeI	ACTAGT	1 cut(s)	182
Sse9I	AATT	8 cut(s)	30, 345, 466, 541, 576, 629, 641, 863
SspMI	CTAG	4 cut(s)	183, 203, 681, 788
TaaI	ACNGT	1 cut(s)	562
TaiI	ACGT	1 cut(s)	408
TaqI	TCGA	2 cut(s)	82, 261
TasI	AATT	8 cut(s)	30, 345, 466, 541, 576, 629, 641, 863
TfiI	GAWTC	1 cut(s)	593
Tru1I	TTAA	5 cut(s)	57, 78, 101, 177, 471
Tru9I	TTAA	5 cut(s)	57, 78, 101, 177, 471
TscAI	CASTG	1 cut(s)	807
TseFI	GTSAC	1 cut(s)	406
TseI	GCWGC	4 cut(s)	160, 456, 619, 622
Tsp45I	GTSAC	1 cut(s)	406
TspDTI	ATGAA	5 cut(s)	81, 297, 600, 614, 774
TspRI	CASTG	1 cut(s)	807
VpaK11BI	GGWCC	1 cut(s)	765
VspI	ATTAAT	1 cut(s)	78
XagI	CCTNNNNNAGG	2 cut(s)	206, 420
XapI	RAATTY	1 cut(s)	576
XmiI	GTMKAC	1 cut(s)	187
XmnI	GAANNNNTTC	1 cut(s)	872
XspI	CTAG	4 cut(s)	183, 203, 681, 788
ZraI	GACGTC	1 cut(s)	406

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.