RLG00000022032

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0001042
Physical Location & Seq
Forward (+)
80142014 .. 80143165
1152 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000022032

Sequence Viewer

Length: 1152 bp
ATGAAAAAAGAAAGCTTGAAGAGTAAGTCCCTCTACTTATGTTTTGAGCAGAAAAATTGTTCCAACAATGCTCACGTTATTCAGTCAATCGAATTGAGCCATGTATTGGCAGCACCAACTGGTGGTGATCATGGCGGCGATGAAATTAAGTTAGAGGAAGTTGCTTATAGATGCGGACCGTACACGAATGTTCCAGGCTGTATGAGAAGTAGTGTCATCGGCTCCAAAATTATTTTCTCCGGTGGCGAGGTATATAATAAAAAGAGAAGCATTACTCCTCCCGTGGGGATTGCAAGCAAAGAAGTTTGTGTGTTTGAGACAGATCCAAGCATAGATCCAAACCCTAGATTTCAGCCCTCCCAAGTGTTTAAGACTAGTAGACCCGATCCTTTCCTTGTAGAAGTGGACGACAAACTTTATTGTTTTGGTGGTTCAAGTGACTCGGTGTCATTTGAGGTATTCGACAAGACACATGAGACATGGTTGCCTCTAGATGCGCCTCCTCGGAGATATCCGTACAGCTTCGATCATGCAATAGCGGGAACCAAAATCTTACTCTGGGTAGAGAACCAAACCGGAGTATTTGGGTTTGACGTGACTCATCCAGAAAAAGGATGGACAAAGTTGGACTCTTGTTTGGGAAGCTGTATTCCATATGTCAATGGCTATCATCAACTATTTCTCAAGTTGAAGCTTCATCGTGATGATGATAATGGTTTTCTAATGTTCACCTGTAAGTTGGAACAACCTCAGACTGTTGGAGTCTTCCACATGTCGCATGAATGTGATTCTTTGAAACCTATGGAACCTCTGCAGTTGCCGAAATTGCCTCATAAATTACCTAGACCAACACGATGTAAGTTTTTCCATGTAGAAGATAAAAAAGTTGGGATTGTTTTCTTCCATGACCATTATGAGTATTATTATGAGGATTATGATTATTATGACGATGACGATGACGATGTGGCCATGGAGGAGGAGGATGTTAGCAGGGTGAGAATTCTTGTCATAATATTTGAATACGAAATTGCGGAGGAATCTATGGATATCAAGTACAAATTGCTCACTAGTCGCTGCCTGGAATACTCTCCCCACAACCTTGAAGAAGTTAGCAACACCACATCAATTCTCATGGGGGCCTATGTGATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

384

Amino Acids

43.83

Weight (kDa)

5.22

Isoelectric Point (pI)

44.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 106, 122
AccI GTMKAC 1 cut(s) 379
AciI CCGC 4 cut(s) 135, 174, 539, 1031
AclWI GGATC 3 cut(s) 317, 329, 380
AcoI YGGCCR 1 cut(s) 966
AcsI RAATTY 1 cut(s) 999
AfaI GTAC 3 cut(s) 182, 518, 1055
AfiI CCNNNNNNNGG 4 cut(s) 106, 122, 284, 611
AflIII ACRYGT 1 cut(s) 771
AgsI TTSAA 6 cut(s) 19, 435, 691, 796, 1019, 1103
AhdI GACNNNNNGTC 1 cut(s) 445
AhlI ACTAGT 2 cut(s) 374, 1067
AjiI CACGTC 1 cut(s) 595
AjnI CCWGG 2 cut(s) 193, 1077
AjuI GAANNNNNNNTTGG 2 cut(s) 218, 250
AluBI AGCT 4 cut(s) 15, 522, 645, 694
AluI AGCT 4 cut(s) 15, 522, 645, 694
Alw26I GTCTC 2 cut(s) 311, 470
AlwI GGATC 3 cut(s) 317, 329, 380
AoxI GGCC 2 cut(s) 966, 1137
ApeKI GCWGC 2 cut(s) 110, 1074
ApoI RAATTY 1 cut(s) 999
AspLEI GCGC 1 cut(s) 499
AspS9I GGNCC 2 cut(s) 176, 1137
AsuHPI GGTGA 3 cut(s) 137, 721, 1006
AvaII GGWCC 1 cut(s) 176
BalI TGGCCA 1 cut(s) 968
BbsI GAAGAC 1 cut(s) 757
BbvI GCAGC 2 cut(s) 122, 1061
BccI CCATC 1 cut(s) 609
BciT130I CCWGG 2 cut(s) 195, 1079
BclI TGATCA 1 cut(s) 127
BcoDI GTCTC 2 cut(s) 311, 470
BcuI ACTAGT 2 cut(s) 374, 1067
BfaI CTAG 5 cut(s) 345, 375, 491, 843, 1068
BfmI CTRYAG 1 cut(s) 812
BisI GCNGC 3 cut(s) 111, 136, 1075
BlsI GCNGC 3 cut(s) 112, 137, 1076
Bme1390I CCNGG 2 cut(s) 195, 1079
Bme18I GGWCC 1 cut(s) 176
BmeRI GACNNNNNGTC 1 cut(s) 445
BmgBI CACGTC 1 cut(s) 595
BmgT120I GGNCC 2 cut(s) 176, 1137
BmiI GGNNCC 4 cut(s) 223, 544, 807, 1138
BmrFI CCNGG 2 cut(s) 195, 1079
BmsI GCATC 2 cut(s) 161, 484
BpiI GAAGAC 1 cut(s) 757
BpuEI CTTGAG 1 cut(s) 668
BsaJI CCNNGG 3 cut(s) 282, 503, 969
BsaWI WCCGGW 2 cut(s) 239, 575
Bsc4I CCNNNNNNNGG 4 cut(s) 106, 122, 284, 611
Bse1I ACTGG 1 cut(s) 124
BseBI CCWGG 2 cut(s) 195, 1079
BseDI CCNNGG 3 cut(s) 282, 503, 969
BseGI GGATG 3 cut(s) 601, 620, 988
BseLI CCNNNNNNNGG 4 cut(s) 106, 122, 284, 611
BseMII CTCAG 1 cut(s) 764
BseNI ACTGG 1 cut(s) 124
BseRI GAGGAG 4 cut(s) 267, 492, 989, 992
BseXI GCAGC 2 cut(s) 122, 1061
BshFI GGCC 2 cut(s) 968, 1139
BsiSI CCGG 2 cut(s) 240, 576
BslFI GGGAC 1 cut(s) 13
BslI CCNNNNNNNGG 4 cut(s) 106, 122, 284, 611
BsmAI GTCTC 2 cut(s) 311, 470
BsmFI GGGAC 1 cut(s) 13
BsnI GGCC 2 cut(s) 968, 1139
Bsp143I GATC 6 cut(s) 127, 322, 334, 385, 526, 1146
Bsp19I CCATGG 1 cut(s) 969
BspACI CCGC 4 cut(s) 135, 174, 539, 1031
BspANI GGCC 2 cut(s) 968, 1139
BspCNI CTCAG 1 cut(s) 763
BspLI GGNNCC 4 cut(s) 223, 544, 807, 1138
BspMAI CTGCAG 1 cut(s) 816
BspPI GGATC 3 cut(s) 317, 329, 380
BsrI ACTGG 1 cut(s) 124
BssECI CCNNGG 3 cut(s) 282, 503, 969
BssMI GATC 6 cut(s) 127, 322, 334, 385, 526, 1146
BssT1I CCWWGG 1 cut(s) 969
Bst2UI CCWGG 2 cut(s) 195, 1079
Bst4CI ACNGT 2 cut(s) 180, 757
Bst6I CTCTTC 1 cut(s) 14
BstC8I GCNNGC 1 cut(s) 295
BstDEI CTNAG 1 cut(s) 750
BstDSI CCRYGG 2 cut(s) 282, 969
BstF5I GGATG 3 cut(s) 601, 620, 988
BstHHI GCGC 1 cut(s) 499
BstKTI GATC 6 cut(s) 130, 325, 337, 388, 529, 1149
BstMAI GTCTC 2 cut(s) 311, 470
BstMBI GATC 6 cut(s) 127, 322, 334, 385, 526, 1146
BstMWI GCNNNNNNNGC 1 cut(s) 826
BstNI CCWGG 2 cut(s) 195, 1079
BstNSI RCATGY 1 cut(s) 775
BstSCI CCNGG 2 cut(s) 193, 1077
BstSFI CTRYAG 1 cut(s) 812
BstV1I GCAGC 2 cut(s) 122, 1061
BstV2I GAAGAC 1 cut(s) 757
BstX2I RGATCY 2 cut(s) 322, 334
BstYI RGATCY 2 cut(s) 322, 334
BsuRI GGCC 2 cut(s) 968, 1139
BtgI CCRYGG 2 cut(s) 282, 969
BtgZI GCGATG 1 cut(s) 153
BtrI CACGTC 1 cut(s) 595
BtsCI GGATG 3 cut(s) 601, 620, 988
Cac8I GCNNGC 1 cut(s) 295
CfoI GCGC 1 cut(s) 499
Cfr13I GGNCC 2 cut(s) 176, 1137
CpoI CGGWCCG 1 cut(s) 176
Csp6I GTAC 3 cut(s) 181, 517, 1054
CspI CGGWCCG 1 cut(s) 176
CviQI GTAC 3 cut(s) 181, 517, 1054
DdeI CTNAG 1 cut(s) 750
DpnI GATC 6 cut(s) 129, 324, 336, 387, 528, 1148
DpnII GATC 6 cut(s) 127, 322, 334, 385, 526, 1146
DriI GACNNNNNGTC 1 cut(s) 445
EaeI YGGCCR 1 cut(s) 966
Eam1104I CTCTTC 1 cut(s) 14
Eam1105I GACNNNNNGTC 1 cut(s) 445
EarI CTCTTC 1 cut(s) 14
Eco130I CCWWGG 1 cut(s) 969
Eco32I GATATC 2 cut(s) 512, 1048
Eco47I GGWCC 1 cut(s) 176
EcoO109I RGGNCCY 1 cut(s) 1137
EcoRI GAATTC 1 cut(s) 999
EcoRII CCWGG 2 cut(s) 193, 1077
EcoRV GATATC 2 cut(s) 512, 1048
EcoT14I CCWWGG 1 cut(s) 969
ErhI CCWWGG 1 cut(s) 969
FaqI GGGAC 1 cut(s) 13
FauI CCCGC 1 cut(s) 532
FauNDI CATATG 1 cut(s) 655
FbaI TGATCA 1 cut(s) 127
FblI GTMKAC 1 cut(s) 379
Fnu4HI GCNGC 3 cut(s) 111, 136, 1075
FokI GGATG 3 cut(s) 588, 627, 995
Fsp4HI GCNGC 3 cut(s) 111, 136, 1075
FspBI CTAG 5 cut(s) 345, 375, 491, 843, 1068
GlaI GCGC 1 cut(s) 498
GluI GCNGC 3 cut(s) 111, 136, 1075
HaeIII GGCC 2 cut(s) 968, 1139
HapII CCGG 2 cut(s) 240, 576
HhaI GCGC 1 cut(s) 499
Hin6I GCGC 1 cut(s) 497
HinP1I GCGC 1 cut(s) 497
HindIII AAGCTT 2 cut(s) 13, 692
HinfI GANTC 6 cut(s) 440, 598, 629, 762, 788, 1037
HpaII CCGG 2 cut(s) 240, 576
HphI GGTGA 3 cut(s) 137, 721, 1006
Hpy166II GTNNAC 4 cut(s) 183, 380, 406, 729
Hpy188I TCNGA 2 cut(s) 507, 753
Hpy188III TCNNGA 3 cut(s) 491, 605, 701
Hpy8I GTNNAC 4 cut(s) 183, 380, 406, 729
HpyCH4III ACNGT 2 cut(s) 180, 757
HpyCH4IV ACGT 2 cut(s) 75, 594
HpyCH4V TGCA 3 cut(s) 293, 533, 814
HpyF10VI GCNNNNNNNGC 1 cut(s) 826
HpyF3I CTNAG 1 cut(s) 750
HpySE526I ACGT 2 cut(s) 75, 594
HspAI GCGC 1 cut(s) 497
Ksp22I TGATCA 1 cut(s) 127
Kzo9I GATC 6 cut(s) 127, 322, 334, 385, 526, 1146
LmnI GCTCC 1 cut(s) 227
Lsp1109I GCAGC 2 cut(s) 122, 1061
LweI GCATC 2 cut(s) 161, 484
MaeI CTAG 5 cut(s) 345, 375, 491, 843, 1068
MaeII ACGT 2 cut(s) 75, 594
MaeIII GTNAC 2 cut(s) 437, 595
MalI GATC 6 cut(s) 129, 324, 336, 387, 528, 1148
MboI GATC 6 cut(s) 127, 322, 334, 385, 526, 1146
MboII GAAGA 5 cut(s) 31, 757, 887, 892, 1115
MflI RGATCY 2 cut(s) 322, 334
MlsI TGGCCA 1 cut(s) 968
MluNI TGGCCA 1 cut(s) 968
MlyI GAGTC 4 cut(s) 434, 592, 623, 771
MmeI TCCRAC 4 cut(s) 87, 606, 720, 739
Mox20I TGGCCA 1 cut(s) 968
MscI TGGCCA 1 cut(s) 968
MseI TTAA 2 cut(s) 147, 369
MslI CAYNNNNRTG 2 cut(s) 702, 783
Msp20I TGGCCA 1 cut(s) 968
MspI CCGG 2 cut(s) 240, 576
MspR9I CCNGG 2 cut(s) 195, 1079
MvaI CCWGG 2 cut(s) 195, 1079
MwoI GCNNNNNNNGC 1 cut(s) 826
NcoI CCATGG 1 cut(s) 969
NdeI CATATG 1 cut(s) 655
NdeII GATC 6 cut(s) 127, 322, 334, 385, 526, 1146
NlaIV GGNNCC 4 cut(s) 223, 544, 807, 1138
NmuCI GTSAC 2 cut(s) 437, 595
NspI RCATGY 1 cut(s) 775
PciI ACATGT 1 cut(s) 771
PfeI GAWTC 2 cut(s) 788, 1037
PflMI CCANNNNNTGG 2 cut(s) 106, 122
PkrI GCNGC 3 cut(s) 112, 137, 1076
PleI GAGTC 4 cut(s) 434, 592, 623, 770
PpsI GAGTC 4 cut(s) 434, 592, 623, 770
PscI ACATGT 1 cut(s) 771
Psp6I CCWGG 2 cut(s) 193, 1077
PspGI CCWGG 2 cut(s) 193, 1077
PspN4I GGNNCC 4 cut(s) 223, 544, 807, 1138
PspPI GGNCC 2 cut(s) 176, 1137
PstI CTGCAG 1 cut(s) 816
PsuI RGATCY 2 cut(s) 322, 334
RsaI GTAC 3 cut(s) 182, 518, 1055
RsaNI GTAC 3 cut(s) 181, 517, 1054
RseI CAYNNNNRTG 2 cut(s) 702, 783
Rsr2I CGGWCCG 1 cut(s) 176
RsrII CGGWCCG 1 cut(s) 176
SaqAI TTAA 2 cut(s) 147, 369
SatI GCNGC 3 cut(s) 111, 136, 1075
Sau3AI GATC 6 cut(s) 127, 322, 334, 385, 526, 1146
Sau96I GGNCC 2 cut(s) 176, 1137
SchI GAGTC 4 cut(s) 434, 592, 623, 771
ScrFI CCNGG 2 cut(s) 195, 1079
SfaNI GCATC 2 cut(s) 161, 484
SfcI CTRYAG 1 cut(s) 812
SinI GGWCC 1 cut(s) 176
SmiMI CAYNNNNRTG 2 cut(s) 702, 783
SmlI CTYRAG 1 cut(s) 683
SmoI CTYRAG 1 cut(s) 683
SpeI ACTAGT 2 cut(s) 374, 1067
SsiI CCGC 4 cut(s) 135, 174, 539, 1031
SspI AATATT 1 cut(s) 1014
SspMI CTAG 5 cut(s) 345, 375, 491, 843, 1068
StyD4I CCNGG 2 cut(s) 193, 1077
StyI CCWWGG 1 cut(s) 969
TaaI ACNGT 2 cut(s) 180, 757
TaiI ACGT 2 cut(s) 78, 597
TaqI TCGA 3 cut(s) 90, 462, 525
TatI WGTACW 1 cut(s) 1053
TauI GCSGC 1 cut(s) 138
TfiI GAWTC 2 cut(s) 788, 1037
Tru1I TTAA 2 cut(s) 147, 369
Tru9I TTAA 2 cut(s) 147, 369
TseFI GTSAC 2 cut(s) 437, 595
TseI GCWGC 2 cut(s) 110, 1074
Tsp45I GTSAC 2 cut(s) 437, 595
TspDTI ATGAA 4 cut(s) 17, 156, 686, 795
TspGWI ACGGA 1 cut(s) 504
Van91I CCANNNNNTGG 2 cut(s) 106, 122
VpaK11BI GGWCC 1 cut(s) 176
XapI RAATTY 1 cut(s) 999
XbaI TCTAGA 1 cut(s) 490
XceI RCATGY 1 cut(s) 775
XcmI CCANNNNNNNNNTGG 1 cut(s) 612
XmiI GTMKAC 1 cut(s) 379
XspI CTAG 5 cut(s) 345, 375, 491, 843, 1068
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.