Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0000808

Physical Location & Seq

Genomic Coordinates Reverse (-)

1128852 .. 1129847

Gene Structure 996 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g01260.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 996 bp

ATGGATGAAACTGCGTTCAAGCAATTCGACATCGTTTCGTACCACTCAGACCACTTCTATAGCGGCGTGATGATAAAGCAGAAGCGCAACGGAGATGGATATAGTTTCATGTATGGCAGTAGAGCCTACAAGAATATCATGCGTGAGTGGAAAATCTTGAAGGAGAACCTCCCAGACACCATATACGTGCGCGTGTACGAGACCCGTGTCGAGCTTATGAGGGCTGTGATTGTTGGAGCACCTGACACACCATATCAGGATGGACTCTTCTTCTTTGACATCTGGTTTCCGCCGGACTACCCTGACTACCCACCCGAGGTGTACTACCGATCGCATGGTTTGTCTCTCAACCCAATGCTAAACTCAGATGGAGGCATCTGTTTAAGCCTTCTAAACACCTGGTTTGGATTGAGGAGGAGTGAGCGGTGGGACTCATCTAGGTCGACCATCCTCCAAGTTTTGGTGTCGCTTCAGGCACTCGTTCTCGACGAAACACCCTATTATAACGACCATGAGAGGGTACCTGCTTTTGGTAGTTTTCTTGAAAGGATTCCTTTCTTGAGAAAGATCGTCATATTGGAGCACAAAACTTACAACGCACGGGTTTTTGTGTCAACTTGCAAATTGACACTGCGTTTGCTAAAAAACCCACCAAAGAATTTTGAACTTTTCATCGGTCAACACTATCGCCAGAGAGCTAGTGGCATACTGAGAGCGATTCGTTTGCGAATTGCTGATGGGTCTTTAAAATATTGTACTCCAATGAACCTTCTCTACCCACAACTCATCGATTCTTTTAGAGACATTGGTTGGGTGGAGGAGGAGGAGTTGTTGGAGTTGGCGGAGCTAAAGAAGAGTCCCTTTCGATGGCTTTATATATGTTTTTTGGTTCTGTATGGTGTTGCCATGGTTATTGGGGCTCTCTATATATACATATATATTCGTCCAACTAGATTCACATCTCGGCCAACCAGGACCTTATTCCAACTTCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0031625 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044424 GO:0044444 GO:0044464 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

332

Amino Acids

39.05

Weight (kDa)

8.96

Isoelectric Point (pI)

43.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	46 - 163	5.1e-19	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000808)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g01260 FvH4_4g19890 FvH4_4g19900 FvH4_4g19910 FvH4_4g23111
malus_domestica	MD16G1152700.v1.1
prunus_persica	Prupe.1G115900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0415111 RchiOBHm_Chr4g0421801 RchiOBHm_Chr4g0425521 RchiOBHm_Chr4g0425551
rosa_laevigata	RLG00000007355 RLG00000007357 RLG00000007358 RLG00000007360 RLG00000007361 RLG00000007364 RLG00000007366 RLG00000007640 RLG00000008097 RLG00000022500
rosa_multiflora	Rmu_co8278857.1_g000001 Rmu_sc0000635.1_g000001 Rmu_sc0000709.1_g000009 Rmu_sc0001900.1_g000008 Rmu_sc0001900.1_g000009 Rmu_sc0003748.1_g000014 Rmu_sc0008440.1_g000003 Rmu_sc0010306.1_g000005 Rmu_sc0012856.1_g000010 Rmu_sc0032188.1_g000001
rosa_roxburghii	Rroxscaffold_5G00364100 Rroxscaffold_5G00367460 Rroxscaffold_5G00367480 Rroxscaffold_5G00367490 Rroxscaffold_5G00367510 Rroxscaffold_5G00371110
rosa_rugosa	Rorug04G0176300 Rorug04G0203700 Rorug04G0203800 Rorug04G0203800 Rorug04G0203900 Rorug06G0289400
rosa_samantha	Rh4AG192100 Rh4AG235200 Rh4AG236000 Rh4AG260700 Rh4AG260900 Rh4BG190000 Rh4BG238700 Rh4BG266400 Rh4BG266600 Rh4BG266700 Rh4CG202900 Rh4CG250700 Rh4CG277700 Rh4CG277900 Rh4CG278000 Rh4DG235300 Rh4DG262700 Rh4DG262900 Rh4DG263100 Rh6BG409300 Rh6DG401700
rosa_wichuraiana	Rw4G016340 Rw4G019840 Rw4G022570 Rw4G022580 Rw4G022590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	504
Acc36I	ACCTGC	1 cut(s)	532
Acc65I	GGTACC	1 cut(s)	520
AccB1I	GGYRCC	1 cut(s)	520
AccB7I	CCANNNNNTGG	1 cut(s)	460
AccBSI	CCGCTC	1 cut(s)	424
AccI	GTMKAC	1 cut(s)	443
AccII	CGCG	1 cut(s)	192
AciI	CCGC	4 cut(s)	63, 290, 424, 842
AcoI	YGGCCR	1 cut(s)	965
AcsI	RAATTY	1 cut(s)	658
AcuI	CTGAAG	1 cut(s)	455
AfaI	GTAC	5 cut(s)	41, 197, 323, 522, 757
AfiI	CCNNNNNNNGG	5 cut(s)	316, 460, 517, 530, 867
AgsI	TTSAA	4 cut(s)	19, 160, 545, 665
AjnI	CCWGG	2 cut(s)	398, 971
AluBI	AGCT	3 cut(s)	214, 698, 847
AluI	AGCT	3 cut(s)	214, 698, 847
Alw21I	GWGCWC	2 cut(s)	241, 585
Alw26I	GTCTC	3 cut(s)	194, 348, 795
Ama87I	CYCGRG	1 cut(s)	314
AoxI	GGCC	1 cut(s)	965
ApoI	RAATTY	1 cut(s)	658
ArsI	GACNNNNNNTTYG	2 cut(s)	619, 651
Asp700I	GAANNNNTTC	1 cut(s)	549
Asp718I	GGTACC	1 cut(s)	520
AspLEI	GCGC	2 cut(s)	87, 192
AspS9I	GGNCC	1 cut(s)	975
AvaI	CYCGRG	1 cut(s)	314
AvaII	GGWCC	1 cut(s)	975
BanI	GGYRCC	1 cut(s)	520
BanII	GRGCYC	1 cut(s)	922
Bbv12I	GWGCWC	2 cut(s)	241, 585
BccI	CCATC	6 cut(s)	89, 254, 362, 455, 731, 861
BcgI	CGANNNNNNTGC	2 cut(s)	706, 740
BciT130I	CCWGG	2 cut(s)	400, 973
BcoDI	GTCTC	3 cut(s)	194, 348, 795
BfaI	CTAG	3 cut(s)	438, 699, 951
BfmI	CTRYAG	1 cut(s)	58
BfuAI	ACCTGC	1 cut(s)	532
BisI	GCNGC	1 cut(s)	64
BlsI	GCNGC	1 cut(s)	65
Bme1390I	CCNGG	2 cut(s)	400, 973
Bme18I	GGWCC	1 cut(s)	975
BmeT110I	CYCGRG	1 cut(s)	314
BmgT120I	GGNCC	1 cut(s)	975
BmiI	GGNNCC	1 cut(s)	522
BmrFI	CCNGG	2 cut(s)	400, 973
BmsI	GCATC	1 cut(s)	384
BoxI	GACNNNNGTC	1 cut(s)	206
BpuEI	CTTGAG	1 cut(s)	580
Bsa29I	ATCGAT	1 cut(s)	789
BsaAI	YACGTR	1 cut(s)	187
BsaBI	GATNNNNATC	1 cut(s)	958
BsaI	GGTCTC	1 cut(s)	194
BsaJI	CCNNGG	2 cut(s)	315, 906
BsaXI	ACNNNNNCTCC	4 cut(s)	812, 815, 842, 845
Bsc4I	CCNNNNNNNGG	5 cut(s)	316, 460, 517, 530, 867
Bse8I	GATNNNNATC	1 cut(s)	958
BseBI	CCWGG	2 cut(s)	400, 973
BseCI	ATCGAT	1 cut(s)	789
BseDI	CCNNGG	2 cut(s)	315, 906
BseGI	GGATG	3 cut(s)	10, 265, 447
BseJI	GATNNNNATC	1 cut(s)	958
BseLI	CCNNNNNNNGG	5 cut(s)	316, 460, 517, 530, 867
BseMII	CTCAG	3 cut(s)	60, 378, 701
BseRI	GAGGAG	5 cut(s)	427, 430, 833, 836, 839
Bsh1236I	CGCG	1 cut(s)	192
Bsh1285I	CGRYCG	1 cut(s)	332
BshFI	GGCC	1 cut(s)	967
BshNI	GGYRCC	1 cut(s)	520
BshVI	ATCGAT	1 cut(s)	789
BsiEI	CGRYCG	1 cut(s)	332
BsiHKAI	GWGCWC	2 cut(s)	241, 585
BsiHKCI	CYCGRG	1 cut(s)	314
BsiSI	CCGG	1 cut(s)	293
BslFI	GGGAC	2 cut(s)	443, 843
BslI	CCNNNNNNNGG	5 cut(s)	316, 460, 517, 530, 867
BsmAI	GTCTC	3 cut(s)	194, 348, 795
BsmFI	GGGAC	2 cut(s)	443, 843
BsnI	GGCC	1 cut(s)	967
Bso31I	GGTCTC	1 cut(s)	194
BsoBI	CYCGRG	1 cut(s)	314
Bsp1286I	GDGCHC	3 cut(s)	241, 585, 922
Bsp143I	GATC	2 cut(s)	329, 567
Bsp19I	CCATGG	1 cut(s)	906
BspACI	CCGC	4 cut(s)	63, 290, 424, 842
BspANI	GGCC	1 cut(s)	967
BspCNI	CTCAG	3 cut(s)	59, 377, 702
BspDI	ATCGAT	1 cut(s)	789
BspFNI	CGCG	1 cut(s)	192
BspLI	GGNNCC	1 cut(s)	522
BspMI	ACCTGC	1 cut(s)	532
BspT107I	GGYRCC	1 cut(s)	520
BspTNI	GGTCTC	1 cut(s)	194
BsrBI	CCGCTC	1 cut(s)	424
BssECI	CCNNGG	2 cut(s)	315, 906
BssMI	GATC	2 cut(s)	329, 567
BssT1I	CCWWGG	1 cut(s)	906
Bst2UI	CCWGG	2 cut(s)	400, 973
Bst6I	CTCTTC	2 cut(s)	272, 848
BstBAI	YACGTR	1 cut(s)	187
BstDEI	CTNAG	3 cut(s)	46, 364, 710
BstDSI	CCRYGG	1 cut(s)	906
BstF5I	GGATG	3 cut(s)	10, 265, 447
BstFNI	CGCG	1 cut(s)	192
BstHHI	GCGC	2 cut(s)	87, 192
BstKTI	GATC	2 cut(s)	332, 570
BstMAI	GTCTC	3 cut(s)	194, 348, 795
BstMBI	GATC	2 cut(s)	329, 567
BstMCI	CGRYCG	1 cut(s)	332
BstNI	CCWGG	2 cut(s)	400, 973
BstPAI	GACNNNNGTC	1 cut(s)	206
BstSCI	CCNGG	2 cut(s)	398, 971
BstSFI	CTRYAG	1 cut(s)	58
BstUI	CGCG	1 cut(s)	192
Bsu15I	ATCGAT	1 cut(s)	789
BsuRI	GGCC	1 cut(s)	967
BsuTUI	ATCGAT	1 cut(s)	789
BtgI	CCRYGG	1 cut(s)	906
BtsCI	GGATG	3 cut(s)	10, 265, 447
BtsI	GCAGTG	1 cut(s)	629
BtsIMutI	CAGTG	1 cut(s)	629
BveI	ACCTGC	1 cut(s)	532
CfoI	GCGC	2 cut(s)	87, 192
Cfr13I	GGNCC	1 cut(s)	975
ClaI	ATCGAT	1 cut(s)	789
CsiI	ACCWGGT	1 cut(s)	398
Csp6I	GTAC	5 cut(s)	40, 196, 322, 521, 756
CviAII	CATG	5 cut(s)	109, 139, 335, 512, 907
CviJI	RGCY	9 cut(s)	125, 214, 224, 387, 698, 847, 871, 920, 967
CviKI_1	RGCY	9 cut(s)	125, 214, 224, 387, 698, 847, 871, 920, 967
CviQI	GTAC	5 cut(s)	40, 196, 322, 521, 756
DdeI	CTNAG	3 cut(s)	46, 364, 710
DpnI	GATC	2 cut(s)	331, 569
DpnII	GATC	2 cut(s)	329, 567
DraI	TTTAAA	1 cut(s)	747
EaeI	YGGCCR	1 cut(s)	965
Eam1104I	CTCTTC	2 cut(s)	272, 848
EarI	CTCTTC	2 cut(s)	272, 848
EciI	GGCGGA	2 cut(s)	279, 857
Eco130I	CCWWGG	1 cut(s)	906
Eco24I	GRGCYC	1 cut(s)	922
Eco31I	GGTCTC	1 cut(s)	194
Eco47I	GGWCC	1 cut(s)	975
Eco57I	CTGAAG	1 cut(s)	455
Eco88I	CYCGRG	1 cut(s)	314
EcoO109I	RGGNCCY	1 cut(s)	975
EcoRII	CCWGG	2 cut(s)	398, 971
EcoT14I	CCWWGG	1 cut(s)	906
EcoT38I	GRGCYC	1 cut(s)	922
ErhI	CCWWGG	1 cut(s)	906
FaeI	CATG	5 cut(s)	112, 142, 338, 515, 910
FalI	AAGNNNNNCTT	4 cut(s)	538, 570, 845, 877
FaqI	GGGAC	2 cut(s)	443, 843
FatI	CATG	5 cut(s)	108, 138, 334, 511, 906
FblI	GTMKAC	1 cut(s)	443
Fnu4HI	GCNGC	1 cut(s)	64
FokI	GGATG	3 cut(s)	17, 272, 434
FriOI	GRGCYC	1 cut(s)	922
Fsp4HI	GCNGC	1 cut(s)	64
FspBI	CTAG	3 cut(s)	438, 699, 951
GlaI	GCGC	2 cut(s)	86, 191
GluI	GCNGC	1 cut(s)	64
HaeIII	GGCC	1 cut(s)	967
HapII	CCGG	1 cut(s)	293
HhaI	GCGC	2 cut(s)	87, 192
Hin1II	CATG	5 cut(s)	112, 142, 338, 515, 910
Hin6I	GCGC	2 cut(s)	85, 190
HinP1I	GCGC	2 cut(s)	85, 190
HincII	GTYRAC	3 cut(s)	444, 615, 680
HindII	GTYRAC	3 cut(s)	444, 615, 680
HinfI	GANTC	7 cut(s)	264, 431, 550, 718, 791, 856, 954
HpaII	CCGG	1 cut(s)	293
Hpy166II	GTNNAC	5 cut(s)	196, 322, 444, 615, 680
Hpy188I	TCNGA	2 cut(s)	49, 367
Hpy188III	TCNNGA	5 cut(s)	157, 257, 485, 542, 559
Hpy8I	GTNNAC	5 cut(s)	196, 322, 444, 615, 680
Hpy99I	CGWCG	1 cut(s)	491
HpyAV	CCTTC	3 cut(s)	154, 398, 779
HpyCH4IV	ACGT	1 cut(s)	186
HpyCH4V	TGCA	1 cut(s)	621
HpyF3I	CTNAG	3 cut(s)	46, 364, 710
HpySE526I	ACGT	1 cut(s)	186
Hsp92II	CATG	5 cut(s)	112, 142, 338, 515, 910
HspAI	GCGC	2 cut(s)	85, 190
KpnI	GGTACC	1 cut(s)	524
Kzo9I	GATC	2 cut(s)	329, 567
LmnI	GCTCC	3 cut(s)	236, 580, 844
LweI	GCATC	1 cut(s)	384
MabI	ACCWGGT	1 cut(s)	398
MaeI	CTAG	3 cut(s)	438, 699, 951
MaeII	ACGT	1 cut(s)	186
MalI	GATC	2 cut(s)	331, 569
MbiI	CCGCTC	1 cut(s)	424
MboI	GATC	2 cut(s)	329, 567
MboII	GAAGA	3 cut(s)	259, 262, 865
MhlI	GDGCHC	3 cut(s)	241, 585, 922
MluCI	AATT	4 cut(s)	23, 623, 658, 729
MlyI	GAGTC	3 cut(s)	258, 425, 865
MmeI	TCCRAC	3 cut(s)	214, 813, 971
MroXI	GAANNNNTTC	1 cut(s)	549
MseI	TTAA	2 cut(s)	383, 746
MslI	CAYNNNNRTG	1 cut(s)	185
MspI	CCGG	1 cut(s)	293
MspR9I	CCNGG	2 cut(s)	400, 973
MvaI	CCWGG	2 cut(s)	400, 973
MvnI	CGCG	1 cut(s)	192
NcoI	CCATGG	1 cut(s)	906
NdeII	GATC	2 cut(s)	329, 567
NlaIII	CATG	5 cut(s)	112, 142, 338, 515, 910
NlaIV	GGNNCC	1 cut(s)	522
NmeAIII	GCCGAG	1 cut(s)	943
PcsI	WCGNNNNNNNCGW	1 cut(s)	486
PdmI	GAANNNNTTC	1 cut(s)	549
PfeI	GAWTC	4 cut(s)	550, 718, 791, 954
PflMI	CCANNNNNTGG	1 cut(s)	460
PkrI	GCNGC	1 cut(s)	65
Ple19I	CGATCG	1 cut(s)	332
PleI	GAGTC	3 cut(s)	258, 425, 864
PpsI	GAGTC	3 cut(s)	258, 425, 864
Ppu21I	YACGTR	1 cut(s)	187
PpuMI	RGGWCCY	1 cut(s)	975
PshAI	GACNNNNGTC	1 cut(s)	206
PsiI	TTATAA	1 cut(s)	504
Psp5II	RGGWCCY	1 cut(s)	975
Psp6I	CCWGG	2 cut(s)	398, 971
PspGI	CCWGG	2 cut(s)	398, 971
PspN4I	GGNNCC	1 cut(s)	522
PspPI	GGNCC	1 cut(s)	975
PspPPI	RGGWCCY	1 cut(s)	975
PsrI	GAACNNNNNNTAC	2 cut(s)	758, 790
PvuI	CGATCG	1 cut(s)	332
RsaI	GTAC	5 cut(s)	41, 197, 323, 522, 757
RsaNI	GTAC	5 cut(s)	40, 196, 322, 521, 756
RseI	CAYNNNNRTG	1 cut(s)	185
SalI	GTCGAC	1 cut(s)	442
SaqAI	TTAA	2 cut(s)	383, 746
SatI	GCNGC	1 cut(s)	64
Sau3AI	GATC	2 cut(s)	329, 567
Sau96I	GGNCC	1 cut(s)	975
SchI	GAGTC	3 cut(s)	258, 425, 865
ScrFI	CCNGG	2 cut(s)	400, 973
SduI	GDGCHC	3 cut(s)	241, 585, 922
SexAI	ACCWGGT	1 cut(s)	398
SfaNI	GCATC	1 cut(s)	384
SfcI	CTRYAG	1 cut(s)	58
SinI	GGWCC	1 cut(s)	975
SmiMI	CAYNNNNRTG	1 cut(s)	185
SmlI	CTYRAG	1 cut(s)	559
SmoI	CTYRAG	1 cut(s)	559
Sse9I	AATT	4 cut(s)	23, 623, 658, 729
SsiI	CCGC	4 cut(s)	63, 290, 424, 842
SspI	AATATT	1 cut(s)	752
SspMI	CTAG	3 cut(s)	438, 699, 951
StyD4I	CCNGG	2 cut(s)	398, 971
StyI	CCWWGG	1 cut(s)	906
TaiI	ACGT	1 cut(s)	189
TaqI	TCGA	6 cut(s)	27, 210, 443, 486, 789, 865
TaqII	GACCGA	1 cut(s)	665
TasI	AATT	4 cut(s)	23, 623, 658, 729
TatI	WGTACW	2 cut(s)	321, 755
TauI	GCSGC	1 cut(s)	66
TfiI	GAWTC	4 cut(s)	550, 718, 791, 954
Tru1I	TTAA	2 cut(s)	383, 746
Tru9I	TTAA	2 cut(s)	383, 746
TscAI	CASTG	1 cut(s)	636
TspDTI	ATGAA	5 cut(s)	21, 97, 661, 779, 980
TspGWI	ACGGA	1 cut(s)	105
TspRI	CASTG	1 cut(s)	636
Van91I	CCANNNNNTGG	1 cut(s)	460
VpaK11BI	GGWCC	1 cut(s)	975
XapI	RAATTY	1 cut(s)	658
XcmI	CCANNNNNNNNNTGG	1 cut(s)	698
XmiI	GTMKAC	1 cut(s)	443
XmnI	GAANNNNTTC	1 cut(s)	549
XspI	CTAG	3 cut(s)	438, 699, 951

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.