Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0032188.1

Orthogroup ID

OG0000808

Physical Location & Seq

Genomic Coordinates Forward (+)

705 .. 1688

Gene Structure 984 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0032188.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

atggccgaacctgcgttcaagaaatttgacatcgtttcggaccactcagaccactactacagcaccgtgaaaaagcatggtgggaaaggaaagaacaacaacggagatggacatagtttcatcaatggcagtacagtctacaagaatatcatgcgcgagtggaaaatcttggtgaagaacctcccagacaccatctacgtgcgcgcgtacgagacccgtgtcgaccttatgagggctgtgattatcggagcagctgacacaccttatcaggatggactcttcttctttgacatcaagtttccgccggactaccctgaccacccaccccatgtctactaccgatcgcatggtctgtctctcaacccaaacctaggatcaaatggatacatctgtttaagccttctcaacacgtggattggctggaggagtgagcggtggcacttatctaggtcgacgatcctccaagttttggtgtcgattcagggactcgttctcaacgagagaccctattataacgaggcgggtctggatttttttgacaggaatatccttagacatcttacagagtatcgatacaaaacttacaacgcaaaggcgtttgtattaacatgccaatcgacgctgtatttgctaaagaatccaccaaagaattttgagtctttcatcgccgaacactttcgtcagagagccagtggcatactgagagcgagtggtttgttagaaggatattatgtgaccatgcgcttgcgtttttcaaatgggtcttcacagtatacttcaatggagcttttgtacccggaactcgtcgaggcttttagaaagaatggttgggtggaggaggacttgcaggtggtagaggagagttcaacgcagttggcggatcaagtggagaggaaagctaagctgcccttttcatggctgttttgttgtttaccttggttatcctggcctattcctgggccgctaataactaattatatatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0031625 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044424 GO:0044444 GO:0044464 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

327

Amino Acids

37.94

Weight (kDa)

8.48

Isoelectric Point (pI)

33.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000808)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g01260 FvH4_4g19890 FvH4_4g19900 FvH4_4g19910 FvH4_4g23111
malus_domestica	MD16G1152700.v1.1
prunus_persica	Prupe.1G115900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0415111 RchiOBHm_Chr4g0421801 RchiOBHm_Chr4g0425521 RchiOBHm_Chr4g0425551
rosa_laevigata	RLG00000007355 RLG00000007357 RLG00000007358 RLG00000007360 RLG00000007361 RLG00000007364 RLG00000007366 RLG00000007640 RLG00000008097 RLG00000022500
rosa_multiflora	Rmu_co8278857.1_g000001 Rmu_sc0000635.1_g000001 Rmu_sc0000709.1_g000009 Rmu_sc0001900.1_g000008 Rmu_sc0001900.1_g000009 Rmu_sc0003748.1_g000014 Rmu_sc0008440.1_g000003 Rmu_sc0010306.1_g000005 Rmu_sc0012856.1_g000010 Rmu_sc0032188.1_g000001
rosa_roxburghii	Rroxscaffold_5G00364100 Rroxscaffold_5G00367460 Rroxscaffold_5G00367480 Rroxscaffold_5G00367490 Rroxscaffold_5G00367510 Rroxscaffold_5G00371110
rosa_rugosa	Rorug04G0176300 Rorug04G0203700 Rorug04G0203800 Rorug04G0203800 Rorug04G0203900 Rorug06G0289400
rosa_samantha	Rh4AG192100 Rh4AG235200 Rh4AG236000 Rh4AG260700 Rh4AG260900 Rh4BG190000 Rh4BG238700 Rh4BG266400 Rh4BG266600 Rh4BG266700 Rh4CG202900 Rh4CG250700 Rh4CG277700 Rh4CG277900 Rh4CG278000 Rh4DG235300 Rh4DG262700 Rh4DG262900 Rh4DG263100 Rh6BG409300 Rh6DG401700
rosa_wichuraiana	Rw4G016340 Rw4G019840 Rw4G022570 Rw4G022580 Rw4G022590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	513
AarI	CACCTGC	1 cut(s)	838
Acc36I	ACCTGC	2 cut(s)	19, 838
AccB7I	CCANNNNNTGG	1 cut(s)	469
AccBSI	CCGCTC	1 cut(s)	433
AccI	GTMKAC	5 cut(s)	138, 222, 333, 452, 773
AccII	CGCG	3 cut(s)	156, 204, 206
AciI	CCGC	5 cut(s)	302, 433, 521, 878, 962
AclWI	GGATC	3 cut(s)	382, 451, 888
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	2 cut(s)	23, 649
AcvI	CACGTG	1 cut(s)	411
AfaI	GTAC	3 cut(s)	133, 209, 794
AfiI	CCNNNNNNNGG	5 cut(s)	232, 371, 469, 915, 956
AflIII	ACRYGT	1 cut(s)	408
AgsI	TTSAA	4 cut(s)	19, 756, 780, 867
AjnI	CCWGG	2 cut(s)	944, 955
AjuI	GAANNNNNNNTTGG	2 cut(s)	811, 843
AluBI	AGCT	4 cut(s)	254, 787, 899, 904
AluI	AGCT	4 cut(s)	254, 787, 899, 904
Alw26I	GTCTC	3 cut(s)	206, 360, 496
AlwI	GGATC	3 cut(s)	382, 451, 888
AoxI	GGCC	3 cut(s)	3, 947, 959
ApeKI	GCWGC	2 cut(s)	251, 904
ApoI	RAATTY	2 cut(s)	23, 649
ArsI	GACNNNNNNTTYG	2 cut(s)	610, 642
Asp700I	GAANNNNTTC	1 cut(s)	675
AspA2I	CCTAGG	1 cut(s)	370
AspLEI	GCGC	4 cut(s)	156, 204, 206, 744
AspS9I	GGNCC	2 cut(s)	40, 959
AsuC2I	CCSGG	1 cut(s)	797
AsuHPI	GGTGA	1 cut(s)	184
AvaII	GGWCC	1 cut(s)	40
AvrII	CCTAGG	1 cut(s)	370
BaeI	ACNNNNGTAYC	2 cut(s)	376, 409
BbrPI	CACGTG	1 cut(s)	411
BbsI	GAAGAC	1 cut(s)	756
BbvI	GCAGC	2 cut(s)	263, 891
BccI	CCATC	3 cut(s)	101, 200, 266
BciT130I	CCWGG	2 cut(s)	946, 957
BciVI	GTATCC	1 cut(s)	377
BcnI	CCSGG	1 cut(s)	797
BcoDI	GTCTC	3 cut(s)	206, 360, 496
BfaI	CTAG	2 cut(s)	371, 447
BfmI	CTRYAG	1 cut(s)	58
BfuAI	ACCTGC	2 cut(s)	19, 838
BfuI	GTATCC	1 cut(s)	377
BisI	GCNGC	3 cut(s)	252, 905, 962
BlnI	CCTAGG	1 cut(s)	370
BlpI	GCTNAGC	1 cut(s)	900
BlsI	GCNGC	3 cut(s)	253, 906, 963
Bme1390I	CCNGG	3 cut(s)	797, 946, 957
Bme18I	GGWCC	1 cut(s)	40
BmgT120I	GGNCC	2 cut(s)	40, 959
BmrFI	CCNGG	3 cut(s)	797, 946, 957
BoxI	GACNNNNGTC	1 cut(s)	218
BpiI	GAAGAC	1 cut(s)	756
BpmI	CTGGAG	1 cut(s)	442
Bpu1102I	GCTNAGC	1 cut(s)	900
BpuMI	CCSGG	1 cut(s)	797
Bsa29I	ATCGAT	1 cut(s)	571
BsaAI	YACGTR	2 cut(s)	199, 411
BsaI	GGTCTC	2 cut(s)	206, 496
BsaJI	CCNNGG	3 cut(s)	370, 935, 956
BsaXI	ACNNNNNCTCC	2 cut(s)	776, 806
Bsc4I	CCNNNNNNNGG	5 cut(s)	232, 371, 469, 915, 956
Bse1I	ACTGG	1 cut(s)	690
BseBI	CCWGG	2 cut(s)	946, 957
BseCI	ATCGAT	1 cut(s)	571
BseDI	CCNNGG	3 cut(s)	370, 935, 956
BseGI	GGATG	1 cut(s)	277
BseLI	CCNNNNNNNGG	5 cut(s)	232, 371, 469, 915, 956
BseMII	CTCAG	2 cut(s)	60, 692
BseNI	ACTGG	1 cut(s)	690
BsePI	GCGCGC	1 cut(s)	202
BseRI	GAGGAG	3 cut(s)	439, 851, 872
BseXI	GCAGC	2 cut(s)	263, 891
Bsh1236I	CGCG	3 cut(s)	156, 204, 206
Bsh1285I	CGRYCG	1 cut(s)	344
BshFI	GGCC	3 cut(s)	5, 949, 961
BshVI	ATCGAT	1 cut(s)	571
BsiEI	CGRYCG	1 cut(s)	344
BsiSI	CCGG	2 cut(s)	305, 797
BsiWI	CGTACG	1 cut(s)	207
BslFI	GGGAC	1 cut(s)	498
BslI	CCNNNNNNNGG	5 cut(s)	232, 371, 469, 915, 956
BsmAI	GTCTC	3 cut(s)	206, 360, 496
BsmFI	GGGAC	1 cut(s)	498
BsnI	GGCC	3 cut(s)	5, 949, 961
Bso31I	GGTCTC	2 cut(s)	206, 496
Bsp143I	GATC	4 cut(s)	341, 374, 456, 880
Bsp1720I	GCTNAGC	1 cut(s)	900
BspACI	CCGC	5 cut(s)	302, 433, 521, 878, 962
BspANI	GGCC	3 cut(s)	5, 949, 961
BspCNI	CTCAG	2 cut(s)	59, 693
BspDI	ATCGAT	1 cut(s)	571
BspFNI	CGCG	3 cut(s)	156, 204, 206
BspMI	ACCTGC	2 cut(s)	19, 838
BspPI	GGATC	3 cut(s)	382, 451, 888
BspTNI	GGTCTC	2 cut(s)	206, 496
BsrBI	CCGCTC	1 cut(s)	433
BsrI	ACTGG	1 cut(s)	690
BssECI	CCNNGG	3 cut(s)	370, 935, 956
BssHII	GCGCGC	1 cut(s)	202
BssMI	GATC	4 cut(s)	341, 374, 456, 880
BssNAI	GTATAC	1 cut(s)	774
BssT1I	CCWWGG	2 cut(s)	370, 935
Bst1107I	GTATAC	1 cut(s)	774
Bst2UI	CCWGG	2 cut(s)	946, 957
Bst4CI	ACNGT	3 cut(s)	67, 136, 771
Bst6I	CTCTTC	1 cut(s)	284
BstBAI	YACGTR	2 cut(s)	199, 411
BstC8I	GCNNGC	2 cut(s)	204, 746
BstDEI	CTNAG	4 cut(s)	46, 551, 701, 900
BstF5I	GGATG	1 cut(s)	277
BstFNI	CGCG	3 cut(s)	156, 204, 206
BstHHI	GCGC	4 cut(s)	156, 204, 206, 744
BstKTI	GATC	4 cut(s)	344, 377, 459, 883
BstMAI	GTCTC	3 cut(s)	206, 360, 496
BstMBI	GATC	4 cut(s)	341, 374, 456, 880
BstMCI	CGRYCG	1 cut(s)	344
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 628
BstNI	CCWGG	2 cut(s)	946, 957
BstNSI	RCATGY	1 cut(s)	612
BstPAI	GACNNNNGTC	1 cut(s)	218
BstSCI	CCNGG	3 cut(s)	795, 944, 955
BstSFI	CTRYAG	1 cut(s)	58
BstUI	CGCG	3 cut(s)	156, 204, 206
BstV1I	GCAGC	2 cut(s)	263, 891
BstV2I	GAAGAC	1 cut(s)	756
BstZ17I	GTATAC	1 cut(s)	774
Bsu15I	ATCGAT	1 cut(s)	571
BsuI	GTATCC	1 cut(s)	377
BsuRI	GGCC	3 cut(s)	5, 949, 961
BsuTUI	ATCGAT	1 cut(s)	571
BtgZI	GCGATG	1 cut(s)	649
BtsCI	GGATG	1 cut(s)	277
BtsIMutI	CAGTG	1 cut(s)	697
BveI	ACCTGC	2 cut(s)	19, 838
Cac8I	GCNNGC	2 cut(s)	204, 746
CfoI	GCGC	4 cut(s)	156, 204, 206, 744
Cfr13I	GGNCC	2 cut(s)	40, 959
ClaI	ATCGAT	1 cut(s)	571
CseI	GACGC	1 cut(s)	628
Csp6I	GTAC	3 cut(s)	132, 208, 793
CviAII	CATG	7 cut(s)	77, 151, 329, 347, 609, 739, 915
CviQI	GTAC	3 cut(s)	132, 208, 793
DdeI	CTNAG	4 cut(s)	46, 551, 701, 900
DpnI	GATC	4 cut(s)	343, 376, 458, 882
DpnII	GATC	4 cut(s)	341, 374, 456, 880
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	284
EarI	CTCTTC	1 cut(s)	284
EciI	GGCGGA	2 cut(s)	291, 893
Eco130I	CCWWGG	2 cut(s)	370, 935
Eco31I	GGTCTC	2 cut(s)	206, 496
Eco47I	GGWCC	1 cut(s)	40
Eco72I	CACGTG	1 cut(s)	411
EcoRII	CCWGG	2 cut(s)	944, 955
EcoT14I	CCWWGG	2 cut(s)	370, 935
ErhI	CCWWGG	2 cut(s)	370, 935
FaeI	CATG	7 cut(s)	80, 154, 332, 350, 612, 742, 918
FalI	AAGNNNNNCTT	2 cut(s)	893, 925
FaqI	GGGAC	1 cut(s)	498
FatI	CATG	7 cut(s)	76, 150, 328, 346, 608, 738, 914
FauI	CCCGC	1 cut(s)	514
FblI	GTMKAC	5 cut(s)	138, 222, 333, 452, 773
Fnu4HI	GCNGC	3 cut(s)	252, 905, 962
FokI	GGATG	1 cut(s)	284
Fsp4HI	GCNGC	3 cut(s)	252, 905, 962
FspBI	CTAG	2 cut(s)	371, 447
GlaI	GCGC	4 cut(s)	155, 203, 205, 743
GluI	GCNGC	3 cut(s)	252, 905, 962
GsuI	CTGGAG	1 cut(s)	442
HaeIII	GGCC	3 cut(s)	5, 949, 961
HapII	CCGG	2 cut(s)	305, 797
HgaI	GACGC	1 cut(s)	628
HhaI	GCGC	4 cut(s)	156, 204, 206, 744
Hin1II	CATG	7 cut(s)	80, 154, 332, 350, 612, 742, 918
Hin6I	GCGC	4 cut(s)	154, 202, 204, 742
HinP1I	GCGC	4 cut(s)	154, 202, 204, 742
HincII	GTYRAC	2 cut(s)	223, 453
HindII	GTYRAC	2 cut(s)	223, 453
HinfI	GANTC	5 cut(s)	276, 478, 486, 637, 656
HpaII	CCGG	2 cut(s)	305, 797
HphI	GGTGA	1 cut(s)	184
Hpy166II	GTNNAC	6 cut(s)	139, 223, 334, 453, 774, 932
Hpy188I	TCNGA	4 cut(s)	40, 49, 248, 684
Hpy188III	TCNNGA	3 cut(s)	19, 269, 527
Hpy8I	GTNNAC	6 cut(s)	139, 223, 334, 453, 774, 932
Hpy99I	CGWCG	3 cut(s)	457, 622, 809
HpyAV	CCTTC	2 cut(s)	410, 716
HpyCH4III	ACNGT	3 cut(s)	67, 136, 771
HpyCH4IV	ACGT	2 cut(s)	198, 410
HpyCH4V	TGCA	1 cut(s)	847
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 628
HpyF3I	CTNAG	4 cut(s)	46, 551, 701, 900
HpySE526I	ACGT	2 cut(s)	198, 410
Hsp92II	CATG	7 cut(s)	80, 154, 332, 350, 612, 742, 918
HspAI	GCGC	4 cut(s)	154, 202, 204, 742
Kzo9I	GATC	4 cut(s)	341, 374, 456, 880
LmnI	GCTCC	2 cut(s)	248, 784
Lsp1109I	GCAGC	2 cut(s)	263, 891
MaeI	CTAG	2 cut(s)	371, 447
MaeII	ACGT	2 cut(s)	198, 410
MaeIII	GTNAC	1 cut(s)	733
MalI	GATC	4 cut(s)	343, 376, 458, 882
MbiI	CCGCTC	1 cut(s)	433
MboI	GATC	4 cut(s)	341, 374, 456, 880
MboII	GAAGA	4 cut(s)	187, 271, 274, 756
MluCI	AATT	3 cut(s)	23, 649, 973
MlyI	GAGTC	3 cut(s)	270, 480, 665
MroXI	GAANNNNTTC	1 cut(s)	675
MseI	TTAA	2 cut(s)	395, 605
MslI	CAYNNNNRTG	1 cut(s)	197
MspA1I	CMGCKG	1 cut(s)	254
MspI	CCGG	2 cut(s)	305, 797
MspR9I	CCNGG	3 cut(s)	797, 946, 957
MvaI	CCWGG	2 cut(s)	946, 957
MvnI	CGCG	3 cut(s)	156, 204, 206
MwoI	GCNNNNNNNGC	2 cut(s)	11, 628
NciI	CCSGG	1 cut(s)	797
NdeII	GATC	4 cut(s)	341, 374, 456, 880
NlaIII	CATG	7 cut(s)	80, 154, 332, 350, 612, 742, 918
NmuCI	GTSAC	1 cut(s)	733
NspI	RCATGY	1 cut(s)	612
PaqCI	CACCTGC	1 cut(s)	838
PauI	GCGCGC	1 cut(s)	202
PcsI	WCGNNNNNNNCGW	1 cut(s)	495
PdmI	GAANNNNTTC	1 cut(s)	675
PfeI	GAWTC	2 cut(s)	478, 637
Pfl23II	CGTACG	1 cut(s)	207
PflMI	CCANNNNNTGG	1 cut(s)	469
PkrI	GCNGC	3 cut(s)	253, 906, 963
Ple19I	CGATCG	1 cut(s)	344
PleI	GAGTC	3 cut(s)	270, 480, 664
PmaCI	CACGTG	1 cut(s)	411
PmlI	CACGTG	1 cut(s)	411
PpsI	GAGTC	3 cut(s)	270, 480, 664
Ppu21I	YACGTR	2 cut(s)	199, 411
PshAI	GACNNNNGTC	1 cut(s)	218
PsiI	TTATAA	1 cut(s)	513
Psp6I	CCWGG	2 cut(s)	944, 955
PspCI	CACGTG	1 cut(s)	411
PspGI	CCWGG	2 cut(s)	944, 955
PspLI	CGTACG	1 cut(s)	207
PspPI	GGNCC	2 cut(s)	40, 959
PteI	GCGCGC	1 cut(s)	202
PvuI	CGATCG	1 cut(s)	344
PvuII	CAGCTG	1 cut(s)	254
RsaI	GTAC	3 cut(s)	133, 209, 794
RsaNI	GTAC	3 cut(s)	132, 208, 793
RseI	CAYNNNNRTG	1 cut(s)	197
SalI	GTCGAC	2 cut(s)	221, 451
SaqAI	TTAA	2 cut(s)	395, 605
SatI	GCNGC	3 cut(s)	252, 905, 962
Sau3AI	GATC	4 cut(s)	341, 374, 456, 880
Sau96I	GGNCC	2 cut(s)	40, 959
SchI	GAGTC	3 cut(s)	270, 480, 665
ScrFI	CCNGG	3 cut(s)	797, 946, 957
SfcI	CTRYAG	1 cut(s)	58
SinI	GGWCC	1 cut(s)	40
SmiMI	CAYNNNNRTG	1 cut(s)	197
Sse9I	AATT	3 cut(s)	23, 649, 973
SsiI	CCGC	5 cut(s)	302, 433, 521, 878, 962
SspMI	CTAG	2 cut(s)	371, 447
StyD4I	CCNGG	3 cut(s)	795, 944, 955
StyI	CCWWGG	2 cut(s)	370, 935
TaaI	ACNGT	3 cut(s)	67, 136, 771
TaiI	ACGT	2 cut(s)	201, 413
TaqI	TCGA	6 cut(s)	222, 452, 476, 571, 617, 807
TasI	AATT	3 cut(s)	23, 649, 973
TatI	WGTACW	1 cut(s)	131
TauI	GCSGC	1 cut(s)	964
TfiI	GAWTC	2 cut(s)	478, 637
Tru1I	TTAA	2 cut(s)	395, 605
Tru9I	TTAA	2 cut(s)	395, 605
TscAI	CASTG	1 cut(s)	697
TseFI	GTSAC	1 cut(s)	733
TseI	GCWGC	2 cut(s)	251, 904
Tsp45I	GTSAC	1 cut(s)	733
TspDTI	ATGAA	3 cut(s)	109, 652, 903
TspGWI	ACGGA	1 cut(s)	117
TspRI	CASTG	1 cut(s)	697
Van91I	CCANNNNNTGG	1 cut(s)	469
VpaK11BI	GGWCC	1 cut(s)	40
XapI	RAATTY	2 cut(s)	23, 649
XceI	RCATGY	1 cut(s)	612
XmaJI	CCTAGG	1 cut(s)	370
XmiI	GTMKAC	5 cut(s)	138, 222, 333, 452, 773
XmnI	GAANNNNTTC	1 cut(s)	675
XspI	CTAG	2 cut(s)	371, 447

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.