Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0000808

Physical Location & Seq

Genomic Coordinates Forward (+)

40487857 .. 40488411

Gene Structure 555 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG238700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGAGCGGGTGGAACCCAGCTCAGTCGACAATCCTCCAAGTTTTGGTGTCTATACAGGCGCTCGTTCTCAACGAGAAGCCCTATTATAACGAACCGGGTAAGAGTTTCTTTGGCCTGAACATTCACTCCCAAGTTTACAACGAAGTTGTGTTTATATCAACATGCAAGTCCACCTTGTATTTGCTCCGAAATCCACCAGAGAATTTTGAGGCTTTCACTATTGAGCATTTTCGTGGGAGAGCAAGCGGTATAATGAGAGCGTGCAGCACTTATGCAGGTGGGCGCGTGGCAGTCGGTAGCATCAATGAGAATGAGGCTGCATGCCCACCTTTGTATTCTGTTTCCAAGAGGTTCAAGGGGTCGATGAAGCAGCTGTACCCACTACTCGGGGAGGCTTTTAGAAGGATTGGGGTTTCTCCTCAACATTGGGTAGAGGAGGACTTGATGGTGGAGAGGAGTTTGATGATGACGACTTCGGTGGAGAAGAAAGCTGTGATACCCTTTTCGTGGCTGTTTCGTTTATTACATTGTTTACCCTGGGTGCGCCGCTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0031625 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044424 GO:0044444 GO:0044464 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

184

Amino Acids

20.94

Weight (kDa)

9.27

Isoelectric Point (pI)

53.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000808)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g01260 FvH4_4g19890 FvH4_4g19900 FvH4_4g19910 FvH4_4g23111
malus_domestica	MD16G1152700.v1.1
prunus_persica	Prupe.1G115900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0415111 RchiOBHm_Chr4g0421801 RchiOBHm_Chr4g0425521 RchiOBHm_Chr4g0425551
rosa_laevigata	RLG00000007355 RLG00000007357 RLG00000007358 RLG00000007360 RLG00000007361 RLG00000007364 RLG00000007366 RLG00000007640 RLG00000008097 RLG00000022500
rosa_multiflora	Rmu_co8278857.1_g000001 Rmu_sc0000635.1_g000001 Rmu_sc0000709.1_g000009 Rmu_sc0001900.1_g000008 Rmu_sc0001900.1_g000009 Rmu_sc0003748.1_g000014 Rmu_sc0008440.1_g000003 Rmu_sc0010306.1_g000005 Rmu_sc0012856.1_g000010 Rmu_sc0032188.1_g000001
rosa_roxburghii	Rroxscaffold_5G00364100 Rroxscaffold_5G00367460 Rroxscaffold_5G00367480 Rroxscaffold_5G00367490 Rroxscaffold_5G00367510 Rroxscaffold_5G00371110
rosa_rugosa	Rorug04G0176300 Rorug04G0203700 Rorug04G0203800 Rorug04G0203800 Rorug04G0203900 Rorug06G0289400
rosa_samantha	Rh4AG192100 Rh4AG235200 Rh4AG236000 Rh4AG260700 Rh4AG260900 Rh4BG190000 Rh4BG238700 Rh4BG266400 Rh4BG266600 Rh4BG266700 Rh4CG202900 Rh4CG250700 Rh4CG277700 Rh4CG277900 Rh4CG278000 Rh4DG235300 Rh4DG262700 Rh4DG262900 Rh4DG263100 Rh6BG409300 Rh6DG401700
rosa_wichuraiana	Rw4G016340 Rw4G019840 Rw4G022570 Rw4G022580 Rw4G022590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	87
AarI	CACCTGC	1 cut(s)	266
Acc36I	ACCTGC	1 cut(s)	266
AccB7I	CCANNNNNTGG	1 cut(s)	43
AccBSI	CCGCTC	1 cut(s)	6
AccI	GTMKAC	1 cut(s)	26
AccII	CGCG	1 cut(s)	285
AciI	CCGC	3 cut(s)	6, 246, 547
AcsI	RAATTY	1 cut(s)	202
AfaI	GTAC	1 cut(s)	377
AfiI	CCNNNNNNNGG	3 cut(s)	43, 386, 507
AgsI	TTSAA	1 cut(s)	355
AjnI	CCWGG	1 cut(s)	536
AloI	GAACNNNNNNTCC	2 cut(s)	110, 142
AluBI	AGCT	3 cut(s)	20, 373, 491
AluI	AGCT	3 cut(s)	20, 373, 491
Ama87I	CYCGRG	1 cut(s)	386
AoxI	GGCC	1 cut(s)	112
ApeKI	GCWGC	3 cut(s)	264, 317, 370
ApoI	RAATTY	1 cut(s)	202
AspLEI	GCGC	3 cut(s)	61, 285, 546
AsuC2I	CCSGG	1 cut(s)	96
AvaI	CYCGRG	1 cut(s)	386
BarI	GAAGNNNNNNTAC	2 cut(s)	359, 391
BbvI	GCAGC	3 cut(s)	276, 304, 382
BccI	CCATC	1 cut(s)	439
BciT130I	CCWGG	1 cut(s)	538
BcnI	CCSGG	1 cut(s)	96
BfoI	RGCGCY	1 cut(s)	62
BfuAI	ACCTGC	1 cut(s)	266
BisI	GCNGC	4 cut(s)	265, 318, 371, 547
BlsI	GCNGC	4 cut(s)	266, 319, 372, 548
Bme1390I	CCNGG	2 cut(s)	96, 538
BmeT110I	CYCGRG	1 cut(s)	386
BmiI	GGNNCC	1 cut(s)	14
BmrFI	CCNGG	2 cut(s)	96, 538
BmsI	GCATC	1 cut(s)	309
BpuMI	CCSGG	1 cut(s)	96
BsaJI	CCNNGG	2 cut(s)	536, 537
BsaXI	ACNNNNNCTCC	2 cut(s)	110, 140
Bsc4I	CCNNNNNNNGG	3 cut(s)	43, 386, 507
BseBI	CCWGG	1 cut(s)	538
BseDI	CCNNGG	2 cut(s)	536, 537
BseLI	CCNNNNNNNGG	3 cut(s)	43, 386, 507
BseMII	CTCAG	1 cut(s)	35
BseRI	GAGGAG	3 cut(s)	408, 449, 469
BseXI	GCAGC	3 cut(s)	276, 304, 382
BseYI	CCCAGC	1 cut(s)	16
BsgI	GTGCAG	1 cut(s)	283
Bsh1236I	CGCG	1 cut(s)	285
BshFI	GGCC	1 cut(s)	114
BsiHKCI	CYCGRG	1 cut(s)	386
BsiSI	CCGG	1 cut(s)	95
BslI	CCNNNNNNNGG	3 cut(s)	43, 386, 507
BsnI	GGCC	1 cut(s)	114
BsoBI	CYCGRG	1 cut(s)	386
BspACI	CCGC	3 cut(s)	6, 246, 547
BspANI	GGCC	1 cut(s)	114
BspCNI	CTCAG	1 cut(s)	34
BspFNI	CGCG	1 cut(s)	285
BspLI	GGNNCC	1 cut(s)	14
BspMI	ACCTGC	1 cut(s)	266
BsrBI	CCGCTC	1 cut(s)	6
BssECI	CCNNGG	2 cut(s)	536, 537
Bst2UI	CCWGG	1 cut(s)	538
BstC8I	GCNNGC	3 cut(s)	244, 262, 322
BstDEI	CTNAG	1 cut(s)	21
BstFNI	CGCG	1 cut(s)	285
BstH2I	RGCGCY	1 cut(s)	62
BstHHI	GCGC	3 cut(s)	61, 285, 546
BstNI	CCWGG	1 cut(s)	538
BstNSI	RCATGY	2 cut(s)	165, 324
BstSCI	CCNGG	2 cut(s)	94, 536
BstUI	CGCG	1 cut(s)	285
BstV1I	GCAGC	3 cut(s)	276, 304, 382
BsuRI	GGCC	1 cut(s)	114
BveI	ACCTGC	1 cut(s)	266
Cac8I	GCNNGC	3 cut(s)	244, 262, 322
CfoI	GCGC	3 cut(s)	61, 285, 546
Csp6I	GTAC	1 cut(s)	376
CviAII	CATG	2 cut(s)	162, 321
CviJI	RGCY	9 cut(s)	20, 79, 114, 212, 317, 373, 395, 491, 511
CviKI_1	RGCY	9 cut(s)	20, 79, 114, 212, 317, 373, 395, 491, 511
CviQI	GTAC	1 cut(s)	376
DdeI	CTNAG	1 cut(s)	21
Eco88I	CYCGRG	1 cut(s)	386
EcoRII	CCWGG	1 cut(s)	536
FaeI	CATG	2 cut(s)	165, 324
FaiI	YATR	8 cut(s)	53, 87, 155, 163, 251, 273, 322, 553
FalI	AAGNNNNNCTT	4 cut(s)	92, 124, 158, 190
FatI	CATG	2 cut(s)	161, 320
FblI	GTMKAC	1 cut(s)	26
Fnu4HI	GCNGC	4 cut(s)	265, 318, 371, 547
Fsp4HI	GCNGC	4 cut(s)	265, 318, 371, 547
GlaI	GCGC	3 cut(s)	60, 284, 545
GluI	GCNGC	4 cut(s)	265, 318, 371, 547
GsaI	CCCAGC	1 cut(s)	20
HaeII	RGCGCY	1 cut(s)	62
HaeIII	GGCC	1 cut(s)	114
HapII	CCGG	1 cut(s)	95
HhaI	GCGC	3 cut(s)	61, 285, 546
Hin1II	CATG	2 cut(s)	165, 324
Hin6I	GCGC	3 cut(s)	59, 283, 544
HinP1I	GCGC	3 cut(s)	59, 283, 544
HincII	GTYRAC	1 cut(s)	27
HindII	GTYRAC	1 cut(s)	27
HpaII	CCGG	1 cut(s)	95
Hpy166II	GTNNAC	4 cut(s)	27, 136, 171, 533
Hpy188I	TCNGA	1 cut(s)	188
Hpy8I	GTNNAC	4 cut(s)	27, 136, 171, 533
HpyAV	CCTTC	1 cut(s)	396
HpyCH4V	TGCA	4 cut(s)	165, 264, 275, 320
HpyF3I	CTNAG	1 cut(s)	21
Hsp92II	CATG	2 cut(s)	165, 324
HspAI	GCGC	3 cut(s)	59, 283, 544
LmnI	GCTCC	1 cut(s)	189
LpnPI	CCDG	8 cut(s)	30, 41, 108, 128, 210, 261, 523, 550
Lsp1109I	GCAGC	3 cut(s)	276, 304, 382
LweI	GCATC	1 cut(s)	309
MbiI	CCGCTC	1 cut(s)	6
MboII	GAAGA	1 cut(s)	496
MluCI	AATT	1 cut(s)	202
MnlI	CCTC	9 cut(s)	44, 202, 307, 342, 385, 427, 429, 430, 447
MslI	CAYNNNNRTG	1 cut(s)	231
MspA1I	CMGCKG	1 cut(s)	373
MspI	CCGG	1 cut(s)	95
MspR9I	CCNGG	2 cut(s)	96, 538
MvaI	CCWGG	1 cut(s)	538
MvnI	CGCG	1 cut(s)	285
NciI	CCSGG	1 cut(s)	96
NlaIII	CATG	2 cut(s)	165, 324
NlaIV	GGNNCC	1 cut(s)	14
NspI	RCATGY	2 cut(s)	165, 324
PaeI	GCATGC	1 cut(s)	324
PaqCI	CACCTGC	1 cut(s)	266
PasI	CCCWGGG	1 cut(s)	537
PcsI	WCGNNNNNNNCGW	1 cut(s)	69
PflMI	CCANNNNNTGG	1 cut(s)	43
PkrI	GCNGC	4 cut(s)	266, 319, 372, 548
PsiI	TTATAA	1 cut(s)	87
Psp6I	CCWGG	1 cut(s)	536
PspFI	CCCAGC	1 cut(s)	16
PspGI	CCWGG	1 cut(s)	536
PspN4I	GGNNCC	1 cut(s)	14
PvuII	CAGCTG	1 cut(s)	373
RsaI	GTAC	1 cut(s)	377
RsaNI	GTAC	1 cut(s)	376
RseI	CAYNNNNRTG	1 cut(s)	231
SalI	GTCGAC	1 cut(s)	25
SatI	GCNGC	4 cut(s)	265, 318, 371, 547
ScrFI	CCNGG	2 cut(s)	96, 538
SetI	ASST	7 cut(s)	22, 176, 280, 331, 353, 375, 493
SfaNI	GCATC	1 cut(s)	309
SmiMI	CAYNNNNRTG	1 cut(s)	231
SphI	GCATGC	1 cut(s)	324
Sse9I	AATT	1 cut(s)	202
SsiI	CCGC	3 cut(s)	6, 246, 547
StyD4I	CCNGG	2 cut(s)	94, 536
TaqI	TCGA	2 cut(s)	26, 362
TasI	AATT	1 cut(s)	202
TauI	GCSGC	1 cut(s)	549
TseI	GCWGC	3 cut(s)	264, 317, 370
TspDTI	ATGAA	1 cut(s)	380
Van91I	CCANNNNNTGG	1 cut(s)	43
XapI	RAATTY	1 cut(s)	202
XceI	RCATGY	2 cut(s)	165, 324
XmiI	GTMKAC	1 cut(s)	26

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.