Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000808

Physical Location & Seq

Genomic Coordinates Reverse (-)

39656462 .. 39657463

Gene Structure 1002 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ38542

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGACCGAACCAACCTTCAAGCAATTCGACATCGTTTCCGATCACTCAGACCACAACTACAGCAAGGAGGAAAAGCAAGGGCAGGGGAAGAAGAACAACAAAAGCGGAGATGGAGATTGTTTCACCAACAGTGGCAGTACTGTATACAAGAAGATCATGCGTGAGTGGAAAATTTTGGAGAATGGTCTCCCGGACACAATCTATGTGCGCGTGTACGAGAAGCGCGTCGACCTGATGAGGGCGGTGATTGTCGGAGCAGCCGGCACACCTTACCACGATGGCCTCTATTTCTTTGACATTAAGTTTCCGACTAACTATCCGAACCGCCCGCCTCAAGTCCATTACCGGTCGCACGGGTTAAGTACGAACGAGCACCTAGGGGTGAACGGACATATCTGCTTGAGCCTTCTCAACACCTGGATTGGTTGGGGTAAGGAGCGGTGGGTTCCATCTCAGTCGACGATTCTCCAAGTTCTTGTGTCAATCCAGGCGTTCGCTCTCAATGCCAAGGCCGAGTACCTCTCTGACAACGAGGTTGCTTTTATAAACAAATGCATATCGACGGTGTATTTGCTCCGAAATCCTCCAAAGAATTTTGAGGGATTCATTGCTGGACATTTTCGTAGTAAAGCACCTGACATATTGAGAGCCTACATCGCTTATGCAAATGGGCGCGTGCTTGTAGGGCACTACAACAATGAGACAGAGGTGGCATGCCTTACTGCGGAAAATAATTCACGTTACTATGTTCCCGAGACATTCAAGGACCGGATGGAGGAGCTGTACCCAGTACTCGTCCAGGCTTTTAAAAAGAATGGGTTTTCTGCAGAAGATTGGGTGGAGGAGGACTTGATTGTGGAGAGGAAACCCTTGAAGCCCTTCTCATGGCACGCGCGCAAGTGTTTTTTAGCTTGTCTGCCTTGTTTACCATGGGTGGCTAATGATGATGATGATGATGATCGTGATGAGTCATTATTGACAAGCAAAGGCAAATTAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0031625 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044424 GO:0044444 GO:0044464 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

333

Amino Acids

38.12

Weight (kDa)

6.22

Isoelectric Point (pI)

36.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	52 - 180	6.7e-20	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000808)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g01260 FvH4_4g19890 FvH4_4g19900 FvH4_4g19910 FvH4_4g23111
malus_domestica	MD16G1152700.v1.1
prunus_persica	Prupe.1G115900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0415111 RchiOBHm_Chr4g0421801 RchiOBHm_Chr4g0425521 RchiOBHm_Chr4g0425551
rosa_laevigata	RLG00000007355 RLG00000007357 RLG00000007358 RLG00000007360 RLG00000007361 RLG00000007364 RLG00000007366 RLG00000007640 RLG00000008097 RLG00000022500
rosa_multiflora	Rmu_co8278857.1_g000001 Rmu_sc0000635.1_g000001 Rmu_sc0000709.1_g000009 Rmu_sc0001900.1_g000008 Rmu_sc0001900.1_g000009 Rmu_sc0003748.1_g000014 Rmu_sc0008440.1_g000003 Rmu_sc0010306.1_g000005 Rmu_sc0012856.1_g000010 Rmu_sc0032188.1_g000001
rosa_roxburghii	Rroxscaffold_5G00364100 Rroxscaffold_5G00367460 Rroxscaffold_5G00367480 Rroxscaffold_5G00367490 Rroxscaffold_5G00367510 Rroxscaffold_5G00371110
rosa_rugosa	Rorug04G0176300 Rorug04G0203700 Rorug04G0203800 Rorug04G0203800 Rorug04G0203900 Rorug06G0289400
rosa_samantha	Rh4AG192100 Rh4AG235200 Rh4AG236000 Rh4AG260700 Rh4AG260900 Rh4BG190000 Rh4BG238700 Rh4BG266400 Rh4BG266600 Rh4BG266700 Rh4CG202900 Rh4CG250700 Rh4CG277700 Rh4CG277900 Rh4CG278000 Rh4DG235300 Rh4DG262700 Rh4DG262900 Rh4DG263100 Rh6BG409300 Rh6DG401700
rosa_wichuraiana	Rw4G016340 Rw4G019840 Rw4G022570 Rw4G022580 Rw4G022590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	545
AccBSI	CCGCTC	1 cut(s)	439
AccI	GTMKAC	3 cut(s)	144, 228, 458
AccII	CGCG	5 cut(s)	210, 225, 675, 893, 895
AciI	CCGC	6 cut(s)	105, 242, 325, 329, 439, 725
AcsI	RAATTY	2 cut(s)	171, 592
AfaI	GTAC	6 cut(s)	139, 215, 364, 518, 785, 792
AfiI	CCNNNNNNNGG	4 cut(s)	238, 724, 775, 885
AgeI	ACCGGT	1 cut(s)	345
AgsI	TTSAA	3 cut(s)	19, 763, 874
AjnI	CCWGG	3 cut(s)	416, 486, 798
AluBI	AGCT	2 cut(s)	781, 911
AluI	AGCT	2 cut(s)	781, 911
Alw21I	GWGCWC	1 cut(s)	375
Alw26I	GTCTC	3 cut(s)	191, 695, 749
Ama87I	CYCGRG	1 cut(s)	752
AoxI	GGCC	2 cut(s)	280, 510
ApeKI	GCWGC	1 cut(s)	257
ApoI	RAATTY	2 cut(s)	171, 592
ArsI	GACNNNNNNTTYG	2 cut(s)	553, 585
AsiGI	ACCGGT	1 cut(s)	345
Asp700I	GAANNNNTTC	1 cut(s)	878
AspA2I	CCTAGG	1 cut(s)	376
AspLEI	GCGC	5 cut(s)	210, 225, 675, 895, 897
AspS9I	GGNCC	1 cut(s)	766
AsuC2I	CCSGG	1 cut(s)	191
AsuHPI	GGTGA	3 cut(s)	115, 256, 394
AvaI	CYCGRG	1 cut(s)	752
AvaII	GGWCC	1 cut(s)	766
AvrII	CCTAGG	1 cut(s)	376
BaeGI	GKGCMC	1 cut(s)	690
Bbv12I	GWGCWC	1 cut(s)	375
BbvI	GCAGC	1 cut(s)	269
BccI	CCATC	4 cut(s)	104, 272, 457, 766
BciT130I	CCWGG	3 cut(s)	418, 488, 800
BcnI	CCSGG	1 cut(s)	191
BcoDI	GTCTC	3 cut(s)	191, 695, 749
BfaI	CTAG	1 cut(s)	377
BfmI	CTRYAG	2 cut(s)	58, 825
BisI	GCNGC	1 cut(s)	258
BlnI	CCTAGG	1 cut(s)	376
BlsI	GCNGC	1 cut(s)	259
BmcAI	AGTACT	2 cut(s)	139, 792
Bme1390I	CCNGG	4 cut(s)	191, 418, 488, 800
Bme18I	GGWCC	1 cut(s)	766
BmeT110I	CYCGRG	1 cut(s)	752
BmgT120I	GGNCC	1 cut(s)	766
BmiI	GGNNCC	1 cut(s)	447
BmrFI	CCNGG	4 cut(s)	191, 418, 488, 800
BmrI	ACTGGG	1 cut(s)	782
BmuI	ACTGGG	1 cut(s)	782
BplI	GAGNNNNNCTC	2 cut(s)	506, 538
BpuEI	CTTGAG	2 cut(s)	318, 421
BpuMI	CCSGG	1 cut(s)	191
BsaBI	GATNNNNATC	1 cut(s)	957
BsaI	GGTCTC	1 cut(s)	191
BsaJI	CCNNGG	3 cut(s)	376, 507, 929
BsaWI	WCCGGW	2 cut(s)	345, 768
BsaXI	ACNNNNNCTCC	2 cut(s)	767, 797
Bsc4I	CCNNNNNNNGG	4 cut(s)	238, 724, 775, 885
Bse118I	RCCGGY	2 cut(s)	260, 345
Bse1I	ACTGG	1 cut(s)	788
Bse3DI	GCAATG	1 cut(s)	606
Bse8I	GATNNNNATC	1 cut(s)	957
BseBI	CCWGG	3 cut(s)	418, 488, 800
BseDI	CCNNGG	3 cut(s)	376, 507, 929
BseGI	GGATG	1 cut(s)	777
BseJI	GATNNNNATC	1 cut(s)	957
BseLI	CCNNNNNNNGG	4 cut(s)	238, 724, 775, 885
BseMI	GCAATG	1 cut(s)	606
BseMII	CTCAG	2 cut(s)	60, 467
BseNI	ACTGG	1 cut(s)	788
BsePI	GCGCGC	1 cut(s)	893
BseRI	GAGGAG	2 cut(s)	791, 857
BseSI	GKGCMC	1 cut(s)	690
BseXI	GCAGC	1 cut(s)	269
Bsh1236I	CGCG	5 cut(s)	210, 225, 675, 893, 895
Bsh1285I	CGRYCG	1 cut(s)	350
BshFI	GGCC	2 cut(s)	282, 512
BshTI	ACCGGT	1 cut(s)	345
BsiEI	CGRYCG	1 cut(s)	350
BsiHKAI	GWGCWC	1 cut(s)	375
BsiHKCI	CYCGRG	1 cut(s)	752
BsiSI	CCGG	4 cut(s)	191, 261, 346, 769
BslI	CCNNNNNNNGG	4 cut(s)	238, 724, 775, 885
BsmAI	GTCTC	3 cut(s)	191, 695, 749
BsnI	GGCC	2 cut(s)	282, 512
Bso31I	GGTCTC	1 cut(s)	191
BsoBI	CYCGRG	1 cut(s)	752
Bsp1286I	GDGCHC	2 cut(s)	375, 690
Bsp143I	GATC	3 cut(s)	40, 153, 958
Bsp19I	CCATGG	1 cut(s)	929
BspACI	CCGC	6 cut(s)	105, 242, 325, 329, 439, 725
BspANI	GGCC	2 cut(s)	282, 512
BspCNI	CTCAG	2 cut(s)	59, 466
BspFNI	CGCG	5 cut(s)	210, 225, 675, 893, 895
BspLI	GGNNCC	1 cut(s)	447
BspMAI	CTGCAG	1 cut(s)	829
BspTNI	GGTCTC	1 cut(s)	191
BsrBI	CCGCTC	1 cut(s)	439
BsrDI	GCAATG	1 cut(s)	606
BsrFI	RCCGGY	2 cut(s)	260, 345
BsrI	ACTGG	1 cut(s)	788
BssAI	RCCGGY	2 cut(s)	260, 345
BssECI	CCNNGG	3 cut(s)	376, 507, 929
BssHII	GCGCGC	1 cut(s)	893
BssMI	GATC	3 cut(s)	40, 153, 958
BssNAI	GTATAC	1 cut(s)	145
BssT1I	CCWWGG	3 cut(s)	376, 507, 929
Bst1107I	GTATAC	1 cut(s)	145
Bst2UI	CCWGG	3 cut(s)	418, 488, 800
Bst4CI	ACNGT	3 cut(s)	131, 142, 565
BstC8I	GCNNGC	6 cut(s)	262, 329, 677, 715, 891, 895
BstDEI	CTNAG	2 cut(s)	46, 453
BstDSI	CCRYGG	1 cut(s)	929
BstF5I	GGATG	1 cut(s)	777
BstFNI	CGCG	5 cut(s)	210, 225, 675, 893, 895
BstHHI	GCGC	5 cut(s)	210, 225, 675, 895, 897
BstKTI	GATC	3 cut(s)	43, 156, 961
BstMAI	GTCTC	3 cut(s)	191, 695, 749
BstMBI	GATC	3 cut(s)	40, 153, 958
BstMCI	CGRYCG	1 cut(s)	350
BstMWI	GCNNNNNNNGC	3 cut(s)	503, 656, 685
BstNI	CCWGG	3 cut(s)	418, 488, 800
BstNSI	RCATGY	1 cut(s)	717
BstSCI	CCNGG	4 cut(s)	189, 416, 486, 798
BstSFI	CTRYAG	2 cut(s)	58, 825
BstSLI	GKGCMC	1 cut(s)	690
BstUI	CGCG	5 cut(s)	210, 225, 675, 893, 895
BstV1I	GCAGC	1 cut(s)	269
BstZ17I	GTATAC	1 cut(s)	145
BsuRI	GGCC	2 cut(s)	282, 512
BtgI	CCRYGG	1 cut(s)	929
BtgZI	GCGATG	1 cut(s)	640
BtsCI	GGATG	1 cut(s)	777
BtsIMutI	CAGTG	1 cut(s)	136
Cac8I	GCNNGC	6 cut(s)	262, 329, 677, 715, 891, 895
CfoI	GCGC	5 cut(s)	210, 225, 675, 895, 897
Cfr10I	RCCGGY	2 cut(s)	260, 345
Cfr13I	GGNCC	1 cut(s)	766
CseI	GACGC	1 cut(s)	214
Csp6I	GTAC	6 cut(s)	138, 214, 363, 517, 784, 791
CspAI	ACCGGT	1 cut(s)	345
CviAII	CATG	4 cut(s)	157, 714, 885, 930
CviQI	GTAC	6 cut(s)	138, 214, 363, 517, 784, 791
DdeI	CTNAG	2 cut(s)	46, 453
DpnI	GATC	3 cut(s)	42, 155, 960
DpnII	GATC	3 cut(s)	40, 153, 958
DraI	TTTAAA	1 cut(s)	808
Eco130I	CCWWGG	3 cut(s)	376, 507, 929
Eco31I	GGTCTC	1 cut(s)	191
Eco47I	GGWCC	1 cut(s)	766
Eco88I	CYCGRG	1 cut(s)	752
EcoRII	CCWGG	3 cut(s)	416, 486, 798
EcoT14I	CCWWGG	3 cut(s)	376, 507, 929
EcoT22I	ATGCAT	1 cut(s)	557
ErhI	CCWWGG	3 cut(s)	376, 507, 929
FaeI	CATG	4 cut(s)	160, 717, 888, 933
FatI	CATG	4 cut(s)	156, 713, 884, 929
FauI	CCCGC	1 cut(s)	336
FblI	GTMKAC	3 cut(s)	144, 228, 458
Fnu4HI	GCNGC	1 cut(s)	258
FokI	GGATG	1 cut(s)	784
Fsp4HI	GCNGC	1 cut(s)	258
FspBI	CTAG	1 cut(s)	377
GlaI	GCGC	5 cut(s)	209, 224, 674, 894, 896
GluI	GCNGC	1 cut(s)	258
HaeIII	GGCC	2 cut(s)	282, 512
HapII	CCGG	4 cut(s)	191, 261, 346, 769
HgaI	GACGC	1 cut(s)	214
HhaI	GCGC	5 cut(s)	210, 225, 675, 895, 897
Hin1II	CATG	4 cut(s)	160, 717, 888, 933
Hin6I	GCGC	5 cut(s)	208, 223, 673, 893, 895
HinP1I	GCGC	5 cut(s)	208, 223, 673, 893, 895
HincII	GTYRAC	2 cut(s)	229, 459
HindII	GTYRAC	2 cut(s)	229, 459
HinfI	GANTC	3 cut(s)	463, 603, 968
HpaII	CCGG	4 cut(s)	191, 261, 346, 769
HphI	GGTGA	3 cut(s)	115, 256, 394
Hpy166II	GTNNAC	6 cut(s)	145, 214, 229, 385, 459, 926
Hpy188I	TCNGA	7 cut(s)	40, 49, 254, 309, 321, 526, 578
Hpy188III	TCNNGA	2 cut(s)	752, 962
Hpy8I	GTNNAC	6 cut(s)	145, 214, 229, 385, 459, 926
Hpy99I	CGWCG	3 cut(s)	230, 463, 565
HpyAV	CCTTC	3 cut(s)	25, 416, 889
HpyCH4III	ACNGT	3 cut(s)	131, 142, 565
HpyCH4IV	ACGT	1 cut(s)	739
HpyCH4V	TGCA	3 cut(s)	555, 665, 827
HpyF10VI	GCNNNNNNNGC	3 cut(s)	503, 656, 685
HpyF3I	CTNAG	2 cut(s)	46, 453
HpySE526I	ACGT	1 cut(s)	739
Hsp92II	CATG	4 cut(s)	160, 717, 888, 933
HspAI	GCGC	5 cut(s)	208, 223, 673, 893, 895
KroI	GCCGGC	1 cut(s)	260
KroNI	GCCGGC	1 cut(s)	262
Kzo9I	GATC	3 cut(s)	40, 153, 958
LmnI	GCTCC	4 cut(s)	254, 436, 579, 778
Lsp1109I	GCAGC	1 cut(s)	269
MaeI	CTAG	1 cut(s)	377
MaeII	ACGT	1 cut(s)	739
MaeIII	GTNAC	1 cut(s)	740
MalI	GATC	3 cut(s)	42, 155, 960
MbiI	CCGCTC	1 cut(s)	439
MboI	GATC	3 cut(s)	40, 153, 958
MboII	GAAGA	4 cut(s)	100, 103, 163, 842
MhlI	GDGCHC	2 cut(s)	375, 690
MluCI	AATT	5 cut(s)	23, 171, 592, 733, 992
MlyI	GAGTC	1 cut(s)	977
MmeI	TCCRAC	2 cut(s)	232, 332
Mph1103I	ATGCAT	1 cut(s)	557
MroNI	GCCGGC	1 cut(s)	260
MroXI	GAANNNNTTC	1 cut(s)	878
MseI	TTAA	3 cut(s)	300, 359, 807
MspI	CCGG	4 cut(s)	191, 261, 346, 769
MspR9I	CCNGG	4 cut(s)	191, 418, 488, 800
MvaI	CCWGG	3 cut(s)	418, 488, 800
MvnI	CGCG	5 cut(s)	210, 225, 675, 893, 895
MwoI	GCNNNNNNNGC	3 cut(s)	503, 656, 685
NaeI	GCCGGC	1 cut(s)	262
NciI	CCSGG	1 cut(s)	191
NcoI	CCATGG	1 cut(s)	929
NdeII	GATC	3 cut(s)	40, 153, 958
NgoMIV	GCCGGC	1 cut(s)	260
NlaIII	CATG	4 cut(s)	160, 717, 888, 933
NlaIV	GGNNCC	1 cut(s)	447
NmeAIII	GCCGAG	1 cut(s)	538
NsiI	ATGCAT	1 cut(s)	557
NspI	RCATGY	1 cut(s)	717
PaeI	GCATGC	1 cut(s)	717
PauI	GCGCGC	1 cut(s)	893
PcsI	WCGNNNNNNNCGW	1 cut(s)	222
PdiI	GCCGGC	1 cut(s)	262
PdmI	GAANNNNTTC	1 cut(s)	878
PfeI	GAWTC	2 cut(s)	463, 603
PfoI	TCCNGGA	1 cut(s)	189
PinAI	ACCGGT	1 cut(s)	345
PkrI	GCNGC	1 cut(s)	259
PleI	GAGTC	1 cut(s)	976
PpsI	GAGTC	1 cut(s)	976
PsiI	TTATAA	1 cut(s)	545
Psp6I	CCWGG	3 cut(s)	416, 486, 798
PspGI	CCWGG	3 cut(s)	416, 486, 798
PspN4I	GGNNCC	1 cut(s)	447
PspPI	GGNCC	1 cut(s)	766
PstI	CTGCAG	1 cut(s)	829
PteI	GCGCGC	1 cut(s)	893
RsaI	GTAC	6 cut(s)	139, 215, 364, 518, 785, 792
RsaNI	GTAC	6 cut(s)	138, 214, 363, 517, 784, 791
SalI	GTCGAC	2 cut(s)	227, 457
SaqAI	TTAA	3 cut(s)	300, 359, 807
SatI	GCNGC	1 cut(s)	258
Sau3AI	GATC	3 cut(s)	40, 153, 958
Sau96I	GGNCC	1 cut(s)	766
ScaI	AGTACT	2 cut(s)	139, 792
SchI	GAGTC	1 cut(s)	977
ScrFI	CCNGG	4 cut(s)	191, 418, 488, 800
SduI	GDGCHC	2 cut(s)	375, 690
SfcI	CTRYAG	2 cut(s)	58, 825
SinI	GGWCC	1 cut(s)	766
SmlI	CTYRAG	2 cut(s)	333, 400
SmoI	CTYRAG	2 cut(s)	333, 400
SphI	GCATGC	1 cut(s)	717
Sse9I	AATT	5 cut(s)	23, 171, 592, 733, 992
SsiI	CCGC	6 cut(s)	105, 242, 325, 329, 439, 725
SspMI	CTAG	1 cut(s)	377
StyD4I	CCNGG	4 cut(s)	189, 416, 486, 798
StyI	CCWWGG	3 cut(s)	376, 507, 929
TaaI	ACNGT	3 cut(s)	131, 142, 565
TaiI	ACGT	1 cut(s)	742
TaqI	TCGA	4 cut(s)	27, 228, 458, 560
TaqII	GACCGA	1 cut(s)	20
TasI	AATT	5 cut(s)	23, 171, 592, 733, 992
TatI	WGTACW	2 cut(s)	137, 790
TfiI	GAWTC	2 cut(s)	463, 603
Tru1I	TTAA	3 cut(s)	300, 359, 807
Tru9I	TTAA	3 cut(s)	300, 359, 807
TscAI	CASTG	1 cut(s)	136
TseI	GCWGC	1 cut(s)	257
TspDTI	ATGAA	1 cut(s)	595
TspGWI	ACGGA	1 cut(s)	402
TspRI	CASTG	1 cut(s)	136
VpaK11BI	GGWCC	1 cut(s)	766
XapI	RAATTY	2 cut(s)	171, 592
XceI	RCATGY	1 cut(s)	717
XmaJI	CCTAGG	1 cut(s)	376
XmiI	GTMKAC	3 cut(s)	144, 228, 458
XmnI	GAANNNNTTC	1 cut(s)	878
XspI	CTAG	1 cut(s)	377
ZrmI	AGTACT	2 cut(s)	139, 792
Zsp2I	ATGCAT	1 cut(s)	557

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.