Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0000808

Physical Location & Seq

Genomic Coordinates Forward (+)

53519730 .. 53532497

Gene Structure 12768 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG278000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1353 bp

ATGGCCCTCTCTACAAACTCCAATCCTAACCAGGTGTCCAAAAACTGTGACAAACAAGAGATCCAAGATTTCTTGCAATTCGATGTCGTTTCTGACTACTCAGATCACCACTACAGTGATGTGAAAAAGAATGAAAACGATCGCGGGGATTGGTTCATGGATGGCAACATTCAATTAATGTTGAGTCACCAAAGGAGCTCTAAACCCAAAGGCCCCCCTTCTGCATCAAAAGGACCAAAAACATTCCCATATCCTCCTAATTCCCAAGTGGCACCCCAATCCAATTTGTCTCCTTCCGCCGCCAGTCCAATCACCATGACCCAAAACTCCGACGCCACTCCCTTCACTCGATTCGACGTCGTTTCGGACCACTCAGACCACTACTACAGTGCCTCCGGCAAGAAGCAAAAGTACGGCGGATCCGTCCACAAGTTGATCATGAAGGAGTGGCGGATTTTGGAGAACAATCTCCCCGACTCTATCTACGTGCGCGTGTACGAGACGCGCATTGATCTTCTCAGAGCCGTCATCGTCGGCGCCGCCGGGACTCCCTACCACGACGCGCTCTTCTTCTTCGATATCAACTTCCCGTCGGACTACCCGACCCGGCCGCCCAATGTGCATTACCGCTCATACGGGCTGCGGGTCAACCCGAATCTTTACGCGAGCGGGTTCGTCTGCCTGAGCCTGCTGAACACCTGGACCGGAAAGAAGAGGGAGAAGTGGAACCCGGCCCAGTCCACGGTCCTCCAGGTTCTGGTCTCGATCCAGGCGCTCGTTTTGAACGAGAAGCCGTATTTCAACGAACCGGGTACCGGGTCGCCGGGTGGGTCAGCCGGGGAGAAGAGGTCGCGGGCGTACAATGAGAACGCGTTTGTCTTGACGTGCAAAACGACGCTGTTTTCGCTCCGGAACCCGCCCAAGAATTTCGAGGCGTTCACGGCGGAGCATTATCGCGAGAGGGGGAGTCGAATTACAAGAGCGTGCGGCGCGTACGTGAGCGGGCGCGTGGGAGTTGGGTACTACAGAGATGGGGTGGAGTTTGAGCCGTGCTCGTCTTCTAAGTCTAAAGTAGTTTCGAAAAAATTTGTAGGGTTAATGCAGGAGTTGTACCCGCAACTGGTCCAGGCTTTCAAGAAGAATGGGACTCTTTTGGGGGATTTAGTGGAGCAGTTGGAGGTGAAGAAGAAAACGACGCCGGTTAAGGTTCGAGTTGACAAGAAAGCTAAGGTTGGTATTGCTAACAAGGTTATTGGGAAATTGCGCAAGTTATTTTGTTCCAACAACAAGAAGAAGAAGAGTCAGAAGATGGAGGAGAGTGATGTCAATGCTGGAGTGGCTGTGGGATGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0031625 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044424 GO:0044444 GO:0044464 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

450

Amino Acids

50.27

Weight (kDa)

9.5

Isoelectric Point (pI)

38.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	146 - 270	7.1e-23	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000808)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g01260 FvH4_4g19890 FvH4_4g19900 FvH4_4g19910 FvH4_4g23111
malus_domestica	MD16G1152700.v1.1
prunus_persica	Prupe.1G115900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0415111 RchiOBHm_Chr4g0421801 RchiOBHm_Chr4g0425521 RchiOBHm_Chr4g0425551
rosa_laevigata	RLG00000007355 RLG00000007357 RLG00000007358 RLG00000007360 RLG00000007361 RLG00000007364 RLG00000007366 RLG00000007640 RLG00000008097 RLG00000022500
rosa_multiflora	Rmu_co8278857.1_g000001 Rmu_sc0000635.1_g000001 Rmu_sc0000709.1_g000009 Rmu_sc0001900.1_g000008 Rmu_sc0001900.1_g000009 Rmu_sc0003748.1_g000014 Rmu_sc0008440.1_g000003 Rmu_sc0010306.1_g000005 Rmu_sc0012856.1_g000010 Rmu_sc0032188.1_g000001
rosa_roxburghii	Rroxscaffold_5G00364100 Rroxscaffold_5G00367460 Rroxscaffold_5G00367480 Rroxscaffold_5G00367490 Rroxscaffold_5G00367510 Rroxscaffold_5G00371110
rosa_rugosa	Rorug04G0176300 Rorug04G0203700 Rorug04G0203800 Rorug04G0203800 Rorug04G0203900 Rorug06G0289400
rosa_samantha	Rh4AG192100 Rh4AG235200 Rh4AG236000 Rh4AG260700 Rh4AG260900 Rh4BG190000 Rh4BG238700 Rh4BG266400 Rh4BG266600 Rh4BG266700 Rh4CG202900 Rh4CG250700 Rh4CG277700 Rh4CG277900 Rh4CG278000 Rh4DG235300 Rh4DG262700 Rh4DG262900 Rh4DG263100 Rh6BG409300 Rh6DG401700
rosa_wichuraiana	Rw4G016340 Rw4G019840 Rw4G022570 Rw4G022580 Rw4G022590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	360
Acc16I	TGCGCA	1 cut(s)	1265
Acc65I	GGTACC	1 cut(s)	812
AccB1I	GGYRCC	3 cut(s)	271, 536, 812
AccB7I	CCANNNNNTGG	1 cut(s)	757
AccBSI	CCGCTC	3 cut(s)	630, 669, 1002
AccIII	TCCGGA	1 cut(s)	909
AclWI	GGATC	4 cut(s)	55, 414, 427, 760
AcoI	YGGCCR	1 cut(s)	608
AcsI	RAATTY	2 cut(s)	925, 1085
AcyI	GRCGYC	4 cut(s)	333, 357, 537, 1196
AfaI	GTAC	7 cut(s)	413, 497, 814, 860, 995, 1022, 1112
AfiI	CCNNNNNNNGG	4 cut(s)	742, 757, 815, 1120
AflIII	ACRYGT	1 cut(s)	870
AgsI	TTSAA	4 cut(s)	173, 784, 802, 1135
AjiI	CACGTC	1 cut(s)	885
AjnI	CCWGG	5 cut(s)	30, 698, 750, 768, 1125
AleI	CACNNNNGTG	1 cut(s)	114
AluBI	AGCT	2 cut(s)	198, 1226
AluI	AGCT	2 cut(s)	198, 1226
Alw21I	GWGCWC	2 cut(s)	200, 1055
Alw26I	GTCTC	3 cut(s)	294, 494, 766
AlwI	GGATC	4 cut(s)	55, 414, 427, 760
AlwNI	CAGNNNCTG	1 cut(s)	757
Aor13HI	TCCGGA	1 cut(s)	909
AoxI	GGCC	4 cut(s)	3, 211, 608, 732
ApeKI	GCWGC	1 cut(s)	640
ApoI	RAATTY	2 cut(s)	925, 1085
ArsI	GACNNNNNNTTYG	2 cut(s)	886, 918
AseI	ATTAAT	1 cut(s)	176
Asp718I	GGTACC	1 cut(s)	812
AspLEI	GCGC	8 cut(s)	492, 507, 539, 565, 775, 992, 1008, 1266
AspS9I	GGNCC	8 cut(s)	4, 212, 233, 367, 702, 733, 745, 1123
AsuC2I	CCSGG	7 cut(s)	544, 607, 731, 810, 817, 825, 838
AsuHPI	GGTGA	4 cut(s)	98, 179, 304, 1192
AsuII	TTCGAA	1 cut(s)	1079
AvaII	GGWCC	5 cut(s)	233, 367, 702, 745, 1123
BamHI	GGATCC	1 cut(s)	419
BanI	GGYRCC	3 cut(s)	271, 536, 812
BanII	GRGCYC	1 cut(s)	200
BarI	GAAGNNNNNNTAC	2 cut(s)	395, 427
BbsI	GAAGAC	1 cut(s)	1050
Bbv12I	GWGCWC	2 cut(s)	200, 1055
BbvI	GCAGC	1 cut(s)	627
BccI	CCATC	3 cut(s)	155, 1025, 1303
BceAI	ACGGC	5 cut(s)	430, 509, 778, 957, 1033
BciT130I	CCWGG	5 cut(s)	32, 700, 752, 770, 1127
BclI	TGATCA	1 cut(s)	435
BcnI	CCSGG	7 cut(s)	544, 607, 731, 810, 817, 825, 838
BcoDI	GTCTC	3 cut(s)	294, 494, 766
BfmI	CTRYAG	3 cut(s)	112, 385, 1024
BfoI	RGCGCY	2 cut(s)	540, 776
BisI	GCNGC	5 cut(s)	300, 540, 611, 641, 988
BlsI	GCNGC	5 cut(s)	301, 541, 612, 642, 989
Bme18I	GGWCC	5 cut(s)	233, 367, 702, 745, 1123
BmgBI	CACGTC	1 cut(s)	885
BmgT120I	GGNCC	8 cut(s)	4, 212, 233, 367, 702, 733, 745, 1123
BmiI	GGNNCC	7 cut(s)	214, 273, 421, 538, 728, 814, 914
BmrI	ACTGGG	1 cut(s)	730
BmsI	GCATC	1 cut(s)	233
BmuI	ACTGGG	1 cut(s)	730
BpiI	GAAGAC	1 cut(s)	1050
BplI	GAGNNNNNCTC	2 cut(s)	1037, 1069
BpmI	CTGGAG	2 cut(s)	734, 1353
Bpu10I	CCTNAGC	2 cut(s)	683, 1227
Bpu14I	TTCGAA	1 cut(s)	1079
BpuMI	CCSGG	7 cut(s)	544, 607, 731, 810, 817, 825, 838
BsaAI	YACGTR	2 cut(s)	487, 997
BsaHI	GRCGYC	4 cut(s)	333, 357, 537, 1196
BsaI	GGTCTC	1 cut(s)	766
BsaJI	CCNNGG	2 cut(s)	741, 837
BsaWI	WCCGGW	2 cut(s)	704, 909
BsaXI	ACNNNNNCTCC	5 cut(s)	377, 407, 833, 863, 1326
Bsc4I	CCNNNNNNNGG	4 cut(s)	742, 757, 815, 1120
Bse118I	RCCGGY	1 cut(s)	1198
Bse1I	ACTGG	3 cut(s)	303, 736, 1125
BseAI	TCCGGA	1 cut(s)	909
BseBI	CCWGG	5 cut(s)	32, 700, 752, 770, 1127
BseDI	CCNNGG	2 cut(s)	741, 837
BseGI	GGATG	2 cut(s)	166, 1352
BseLI	CCNNNNNNNGG	4 cut(s)	742, 757, 815, 1120
BseMII	CTCAG	4 cut(s)	114, 387, 532, 674
BseNI	ACTGG	3 cut(s)	303, 736, 1125
BseRI	GAGGAG	1 cut(s)	1328
BseX3I	CGGCCG	1 cut(s)	608
BseXI	GCAGC	1 cut(s)	627
Bsh1285I	CGRYCG	2 cut(s)	142, 611
BshFI	GGCC	4 cut(s)	5, 213, 610, 734
BshNI	GGYRCC	3 cut(s)	271, 536, 812
BsiEI	CGRYCG	2 cut(s)	142, 611
BsiHKAI	GWGCWC	2 cut(s)	200, 1055
BsiWI	CGTACG	1 cut(s)	993
BslFI	GGGAC	2 cut(s)	559, 1159
BslI	CCNNNNNNNGG	4 cut(s)	742, 757, 815, 1120
BsmAI	GTCTC	3 cut(s)	294, 494, 766
BsmBI	CGTCTC	1 cut(s)	494
BsmFI	GGGAC	2 cut(s)	559, 1159
BsnI	GGCC	4 cut(s)	5, 213, 610, 734
Bso31I	GGTCTC	1 cut(s)	766
Bsp119I	TTCGAA	1 cut(s)	1079
Bsp1286I	GDGCHC	2 cut(s)	200, 1055
Bsp13I	TCCGGA	1 cut(s)	909
Bsp143I	GATC	7 cut(s)	60, 103, 139, 419, 435, 511, 765
Bsp68I	TCGCGA	1 cut(s)	957
BspANI	GGCC	4 cut(s)	5, 213, 610, 734
BspCNI	CTCAG	4 cut(s)	113, 386, 531, 675
BspEI	TCCGGA	1 cut(s)	909
BspHI	TCATGA	1 cut(s)	438
BspLI	GGNNCC	7 cut(s)	214, 273, 421, 538, 728, 814, 914
BspPI	GGATC	4 cut(s)	55, 414, 427, 760
BspQI	GCTCTTC	1 cut(s)	572
BspT104I	TTCGAA	1 cut(s)	1079
BspT107I	GGYRCC	3 cut(s)	271, 536, 812
BspTNI	GGTCTC	1 cut(s)	766
BsrBI	CCGCTC	3 cut(s)	630, 669, 1002
BsrFI	RCCGGY	1 cut(s)	1198
BsrI	ACTGG	3 cut(s)	303, 736, 1125
BssAI	RCCGGY	1 cut(s)	1198
BssECI	CCNNGG	2 cut(s)	741, 837
BssMI	GATC	7 cut(s)	60, 103, 139, 419, 435, 511, 765
BssNI	GRCGYC	4 cut(s)	333, 357, 537, 1196
Bst2UI	CCWGG	5 cut(s)	32, 700, 752, 770, 1127
Bst4CI	ACNGT	4 cut(s)	47, 116, 389, 745
Bst6I	CTCTTC	4 cut(s)	572, 707, 839, 1292
BstACI	GRCGYC	4 cut(s)	333, 357, 537, 1196
BstBAI	YACGTR	2 cut(s)	487, 997
BstBI	TTCGAA	1 cut(s)	1079
BstC8I	GCNNGC	5 cut(s)	667, 689, 855, 985, 1004
BstDEI	CTNAG	6 cut(s)	100, 373, 518, 683, 1062, 1227
BstDSI	CCRYGG	1 cut(s)	741
BstF5I	GGATG	2 cut(s)	166, 1352
BstH2I	RGCGCY	2 cut(s)	540, 776
BstHHI	GCGC	8 cut(s)	492, 507, 539, 565, 775, 992, 1008, 1266
BstKTI	GATC	7 cut(s)	63, 106, 142, 422, 438, 514, 768
BstMAI	GTCTC	3 cut(s)	294, 494, 766
BstMBI	GATC	7 cut(s)	60, 103, 139, 419, 435, 511, 765
BstMCI	CGRYCG	2 cut(s)	142, 611
BstMWI	GCNNNNNNNGC	5 cut(s)	619, 904, 941, 989, 1337
BstNI	CCWGG	5 cut(s)	32, 700, 752, 770, 1127
BstSFI	CTRYAG	3 cut(s)	112, 385, 1024
BstV1I	GCAGC	1 cut(s)	627
BstV2I	GAAGAC	1 cut(s)	1050
BstX2I	RGATCY	2 cut(s)	60, 419
BstYI	RGATCY	2 cut(s)	60, 419
BstZI	CGGCCG	1 cut(s)	608
BsuRI	GGCC	4 cut(s)	5, 213, 610, 734
BtgI	CCRYGG	1 cut(s)	741
BtrI	CACGTC	1 cut(s)	885
BtsCI	GGATG	2 cut(s)	166, 1352
BtsIMutI	CAGTG	2 cut(s)	121, 394
BtuMI	TCGCGA	1 cut(s)	957
Cac8I	GCNNGC	5 cut(s)	667, 689, 855, 985, 1004
CaiI	CAGNNNCTG	1 cut(s)	757
CciI	TCATGA	1 cut(s)	438
CfoI	GCGC	8 cut(s)	492, 507, 539, 565, 775, 992, 1008, 1266
Cfr10I	RCCGGY	1 cut(s)	1198
Cfr13I	GGNCC	8 cut(s)	4, 212, 233, 367, 702, 733, 745, 1123
CseI	GACGC	5 cut(s)	341, 511, 569, 904, 1204
CsiI	ACCWGGT	1 cut(s)	30
Csp6I	GTAC	7 cut(s)	412, 496, 813, 859, 994, 1021, 1111
CviAII	CATG	3 cut(s)	157, 316, 439
CviQI	GTAC	7 cut(s)	412, 496, 813, 859, 994, 1021, 1111
DdeI	CTNAG	6 cut(s)	100, 373, 518, 683, 1062, 1227
DinI	GGCGCC	1 cut(s)	538
DpnI	GATC	7 cut(s)	62, 105, 141, 421, 437, 513, 767
DpnII	GATC	7 cut(s)	60, 103, 139, 419, 435, 511, 765
EaeI	YGGCCR	1 cut(s)	608
EagI	CGGCCG	1 cut(s)	608
Eam1104I	CTCTTC	4 cut(s)	572, 707, 839, 1292
EarI	CTCTTC	4 cut(s)	572, 707, 839, 1292
EciI	GGCGGA	4 cut(s)	286, 432, 466, 959
Ecl136II	GAGCTC	1 cut(s)	198
EclXI	CGGCCG	1 cut(s)	608
Eco24I	GRGCYC	1 cut(s)	200
Eco31I	GGTCTC	1 cut(s)	766
Eco32I	GATATC	1 cut(s)	580
Eco47I	GGWCC	5 cut(s)	233, 367, 702, 745, 1123
Eco52I	CGGCCG	1 cut(s)	608
Eco53kI	GAGCTC	1 cut(s)	198
EcoICRI	GAGCTC	1 cut(s)	198
EcoO109I	RGGNCCY	1 cut(s)	212
EcoRII	CCWGG	5 cut(s)	30, 698, 750, 768, 1125
EcoRV	GATATC	1 cut(s)	580
EcoT38I	GRGCYC	1 cut(s)	200
EgeI	GGCGCC	1 cut(s)	538
EheI	GGCGCC	1 cut(s)	538
Esp3I	CGTCTC	1 cut(s)	494
FaeI	CATG	3 cut(s)	160, 319, 442
FaiI	YATR	5 cut(s)	158, 250, 317, 440, 634
FaqI	GGGAC	2 cut(s)	559, 1159
FatI	CATG	3 cut(s)	156, 315, 438
FauI	CCCGC	7 cut(s)	137, 636, 662, 846, 924, 995, 1122
FbaI	TGATCA	1 cut(s)	435
Fnu4HI	GCNGC	5 cut(s)	300, 540, 611, 641, 988
FokI	GGATG	1 cut(s)	173
FriOI	GRGCYC	1 cut(s)	200
Fsp4HI	GCNGC	5 cut(s)	300, 540, 611, 641, 988
FspI	TGCGCA	1 cut(s)	1265
GlaI	GCGC	8 cut(s)	491, 506, 538, 564, 774, 991, 1007, 1265
GluI	GCNGC	5 cut(s)	300, 540, 611, 641, 988
GsuI	CTGGAG	2 cut(s)	734, 1353
HaeII	RGCGCY	2 cut(s)	540, 776
HaeIII	GGCC	4 cut(s)	5, 213, 610, 734
HgaI	GACGC	5 cut(s)	341, 511, 569, 904, 1204
HhaI	GCGC	8 cut(s)	492, 507, 539, 565, 775, 992, 1008, 1266
Hin1I	GRCGYC	4 cut(s)	333, 357, 537, 1196
Hin1II	CATG	3 cut(s)	160, 319, 442
Hin6I	GCGC	8 cut(s)	490, 505, 537, 563, 773, 990, 1006, 1264
HinP1I	GCGC	8 cut(s)	490, 505, 537, 563, 773, 990, 1006, 1264
HincII	GTYRAC	2 cut(s)	649, 1216
HindII	GTYRAC	2 cut(s)	649, 1216
HinfI	GANTC	8 cut(s)	184, 351, 476, 547, 655, 967, 1147, 1300
HphI	GGTGA	4 cut(s)	98, 179, 304, 1192
Hpy166II	GTNNAC	6 cut(s)	427, 496, 649, 741, 939, 1216
Hpy188I	TCNGA	8 cut(s)	94, 103, 331, 367, 376, 521, 595, 1305
Hpy188III	TCNNGA	6 cut(s)	439, 763, 880, 910, 956, 1135
Hpy8I	GTNNAC	6 cut(s)	427, 496, 649, 741, 939, 1216
Hpy99I	CGWCG	8 cut(s)	335, 359, 362, 536, 563, 595, 898, 1198
HpyAV	CCTTC	4 cut(s)	228, 303, 352, 436
HpyCH4III	ACNGT	4 cut(s)	47, 116, 389, 745
HpyCH4IV	ACGT	4 cut(s)	357, 486, 884, 996
HpyCH4V	TGCA	5 cut(s)	76, 224, 622, 888, 1102
HpyF10VI	GCNNNNNNNGC	5 cut(s)	619, 904, 941, 989, 1337
HpyF3I	CTNAG	6 cut(s)	100, 373, 518, 683, 1062, 1227
HpySE526I	ACGT	4 cut(s)	357, 486, 884, 996
Hsp92I	GRCGYC	4 cut(s)	333, 357, 537, 1196
Hsp92II	CATG	3 cut(s)	160, 319, 442
HspAI	GCGC	8 cut(s)	490, 505, 537, 563, 773, 990, 1006, 1264
KasI	GGCGCC	1 cut(s)	536
Kpn2I	TCCGGA	1 cut(s)	909
KpnI	GGTACC	1 cut(s)	816
Ksp22I	TGATCA	1 cut(s)	435
Kzo9I	GATC	7 cut(s)	60, 103, 139, 419, 435, 511, 765
LguI	GCTCTTC	1 cut(s)	572
LmnI	GCTCC	4 cut(s)	195, 912, 946, 1168
Lsp1109I	GCAGC	1 cut(s)	627
LweI	GCATC	1 cut(s)	233
MabI	ACCWGGT	1 cut(s)	30
MaeII	ACGT	4 cut(s)	357, 486, 884, 996
MaeIII	GTNAC	2 cut(s)	47, 185
MalI	GATC	7 cut(s)	62, 105, 141, 421, 437, 513, 767
MbiI	CCGCTC	3 cut(s)	630, 669, 1002
MboI	GATC	7 cut(s)	60, 103, 139, 419, 435, 511, 765
MflI	RGATCY	2 cut(s)	60, 419
MhlI	GDGCHC	2 cut(s)	200, 1055
MluCI	AATT	8 cut(s)	77, 173, 259, 283, 925, 972, 1085, 1259
MluI	ACGCGT	1 cut(s)	870
Mly113I	GGCGCC	1 cut(s)	537
MlyI	GAGTC	6 cut(s)	193, 470, 541, 976, 1141, 1309
MmeI	TCCRAC	4 cut(s)	354, 573, 1155, 1305
MroI	TCCGGA	1 cut(s)	909
MseI	TTAA	3 cut(s)	176, 1097, 1203
MslI	CAYNNNNRTG	1 cut(s)	114
MvaI	CCWGG	5 cut(s)	32, 700, 752, 770, 1127
MwoI	GCNNNNNNNGC	5 cut(s)	619, 904, 941, 989, 1337
NarI	GGCGCC	1 cut(s)	537
NciI	CCSGG	7 cut(s)	544, 607, 731, 810, 817, 825, 838
NdeII	GATC	7 cut(s)	60, 103, 139, 419, 435, 511, 765
NlaIII	CATG	3 cut(s)	160, 319, 442
NlaIV	GGNNCC	7 cut(s)	214, 273, 421, 538, 728, 814, 914
NmuCI	GTSAC	2 cut(s)	47, 185
NruI	TCGCGA	1 cut(s)	957
NsbI	TGCGCA	1 cut(s)	1265
NspV	TTCGAA	1 cut(s)	1079
OliI	CACNNNNGTG	1 cut(s)	114
PagI	TCATGA	1 cut(s)	438
PciSI	GCTCTTC	1 cut(s)	572
PcsI	WCGNNNNNNNCGW	4 cut(s)	420, 599, 783, 890
PfeI	GAWTC	2 cut(s)	351, 655
Pfl23II	CGTACG	1 cut(s)	993
PflMI	CCANNNNNTGG	1 cut(s)	757
PkrI	GCNGC	5 cut(s)	301, 541, 612, 642, 989
Ple19I	CGATCG	1 cut(s)	142
PleI	GAGTC	6 cut(s)	192, 470, 541, 975, 1141, 1308
PluTI	GGCGCC	1 cut(s)	540
PpsI	GAGTC	6 cut(s)	192, 470, 541, 975, 1141, 1308
Ppu21I	YACGTR	2 cut(s)	487, 997
PshBI	ATTAAT	1 cut(s)	176
Psp124BI	GAGCTC	1 cut(s)	200
Psp6I	CCWGG	5 cut(s)	30, 698, 750, 768, 1125
PspGI	CCWGG	5 cut(s)	30, 698, 750, 768, 1125
PspLI	CGTACG	1 cut(s)	993
PspN4I	GGNNCC	7 cut(s)	214, 273, 421, 538, 728, 814, 914
PspPI	GGNCC	8 cut(s)	4, 212, 233, 367, 702, 733, 745, 1123
PstNI	CAGNNNCTG	1 cut(s)	757
PsuI	RGATCY	2 cut(s)	60, 419
PvuI	CGATCG	1 cut(s)	142
RruI	TCGCGA	1 cut(s)	957
RsaI	GTAC	7 cut(s)	413, 497, 814, 860, 995, 1022, 1112
RsaNI	GTAC	7 cut(s)	412, 496, 813, 859, 994, 1021, 1111
RseI	CAYNNNNRTG	1 cut(s)	114
SacI	GAGCTC	1 cut(s)	200
SapI	GCTCTTC	1 cut(s)	572
SaqAI	TTAA	3 cut(s)	176, 1097, 1203
SatI	GCNGC	5 cut(s)	300, 540, 611, 641, 988
Sau3AI	GATC	7 cut(s)	60, 103, 139, 419, 435, 511, 765
Sau96I	GGNCC	8 cut(s)	4, 212, 233, 367, 702, 733, 745, 1123
SchI	GAGTC	6 cut(s)	193, 470, 541, 976, 1141, 1309
SduI	GDGCHC	2 cut(s)	200, 1055
SexAI	ACCWGGT	1 cut(s)	30
SfaNI	GCATC	1 cut(s)	233
SfcI	CTRYAG	3 cut(s)	112, 385, 1024
SfoI	GGCGCC	1 cut(s)	538
SfuI	TTCGAA	1 cut(s)	1079
SinI	GGWCC	5 cut(s)	233, 367, 702, 745, 1123
SmiMI	CAYNNNNRTG	1 cut(s)	114
Sse9I	AATT	8 cut(s)	77, 173, 259, 283, 925, 972, 1085, 1259
SspDI	GGCGCC	1 cut(s)	536
SstI	GAGCTC	1 cut(s)	200
TaaI	ACNGT	4 cut(s)	47, 116, 389, 745
TaiI	ACGT	4 cut(s)	360, 489, 887, 999
TaqI	TCGA	9 cut(s)	81, 349, 354, 576, 764, 930, 970, 1079, 1210
TasI	AATT	8 cut(s)	77, 173, 259, 283, 925, 972, 1085, 1259
TauI	GCSGC	4 cut(s)	302, 542, 613, 990
TfiI	GAWTC	2 cut(s)	351, 655
Tru1I	TTAA	3 cut(s)	176, 1097, 1203
Tru9I	TTAA	3 cut(s)	176, 1097, 1203
TscAI	CASTG	2 cut(s)	121, 394
TseFI	GTSAC	2 cut(s)	47, 185
TseI	GCWGC	1 cut(s)	640
Tsp45I	GTSAC	2 cut(s)	47, 185
TspDTI	ATGAA	3 cut(s)	145, 147, 455
TspGWI	ACGGA	1 cut(s)	412
TspRI	CASTG	2 cut(s)	121, 394
Van91I	CCANNNNNTGG	1 cut(s)	757
VpaK11BI	GGWCC	5 cut(s)	233, 367, 702, 745, 1123
VspI	ATTAAT	1 cut(s)	176
XapI	RAATTY	2 cut(s)	925, 1085
ZraI	GACGTC	1 cut(s)	358

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.