Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0000808

Physical Location & Seq

Genomic Coordinates Reverse (-)

54000404 .. 54001666

Gene Structure 1263 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG235200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGGACCAATCTCACCAAAATCTAACAAAGATGGCTGTCTTGATTACCAAGCCTGCGTTTAAGCAATTTGATGTCGTTTCTAACCATTCAGACCACCACTTCAGCTGCGTGGAAAAGCAGGGAAAGGGGAAGAATAATAACATCGGAGATGAAGATTGTTTCACCAACATCGGCAGTACCATCTATCAGACGATCATGCGTGAATGGAAAATTCTAGAGAAGGACCTTCCGGACACTATCTACGTGCGGGTGTACGATACACGCATTGACCTCCTCAGGGCTGTGATTATCGGAGCTGCCGGCACACCTTACCACGATGGTCTCTTTTTCTTCGACATTAAATTCCCACCTGACTACCCAAAGCACCCCCCAAAGGTCCATTACCGGTCACATGGGTTATGTCTCAACCCAAACCTCGGCGCTGGTGGACACGTCTGCTTAAGCATTCTCAATACATGGATTGGCTGGAGATGTGAGCGGTGGAACCCAGCTCAGTCGACAATCCTCCAAGTTTTGGTGTCTATACAGGCGCTCGTTCTCAACGAGAAGCCCTATTATAACGAACCGGGTAAGAGTTTCTTTGGCCTGAACCTTCACTCCGAATTTTACAACGAAGTTGTGTTTATATCAACATGCAAGTCCACCTTGTATTTGCTCCGAAATCCACCAGAGAATTTTGAGGCTTTCACTATTGAGCATTTTCGTGGGAGAGCAAGCGGTATAATGAGAGCGTGCAGCACTTATGCAGGTGGGCGCGTGGCAGTCGGTAGCATCAATGAGAATGAGGCTGCATGCCCACCTTTGTATTCTGTTTCCAAGAGGTTCAAGGGGTCGATGAAGCAGCTGTACCCACTACTCGGGGAGGCTTTTAGAAGGATTGGGGTTTCTCCTCAACATTGGGTAGAGGAGGACTTGATGGTGGAGAGGAGTTTGATGATGACGACTTCGGTGGAGAAGAAAGCTGTGCTACCCTTTTCGTGGCTGTTTCGTTTATTACATTGTTTACCCTGGGTGCGCCGCTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0031625 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044424 GO:0044444 GO:0044464 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

341

Amino Acids

38.99

Weight (kDa)

8.76

Isoelectric Point (pI)

45.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	65 - 187	1e-24	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000808)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g01260 FvH4_4g19890 FvH4_4g19900 FvH4_4g19910 FvH4_4g23111
malus_domestica	MD16G1152700.v1.1
prunus_persica	Prupe.1G115900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0415111 RchiOBHm_Chr4g0421801 RchiOBHm_Chr4g0425521 RchiOBHm_Chr4g0425551
rosa_laevigata	RLG00000007355 RLG00000007357 RLG00000007358 RLG00000007360 RLG00000007361 RLG00000007364 RLG00000007366 RLG00000007640 RLG00000008097 RLG00000022500
rosa_multiflora	Rmu_co8278857.1_g000001 Rmu_sc0000635.1_g000001 Rmu_sc0000709.1_g000009 Rmu_sc0001900.1_g000008 Rmu_sc0001900.1_g000009 Rmu_sc0003748.1_g000014 Rmu_sc0008440.1_g000003 Rmu_sc0010306.1_g000005 Rmu_sc0012856.1_g000010 Rmu_sc0032188.1_g000001
rosa_roxburghii	Rroxscaffold_5G00364100 Rroxscaffold_5G00367460 Rroxscaffold_5G00367480 Rroxscaffold_5G00367490 Rroxscaffold_5G00367510 Rroxscaffold_5G00371110
rosa_rugosa	Rorug04G0176300 Rorug04G0203700 Rorug04G0203800 Rorug04G0203800 Rorug04G0203900 Rorug06G0289400
rosa_samantha	Rh4AG192100 Rh4AG235200 Rh4AG236000 Rh4AG260700 Rh4AG260900 Rh4BG190000 Rh4BG238700 Rh4BG266400 Rh4BG266600 Rh4BG266700 Rh4CG202900 Rh4CG250700 Rh4CG277700 Rh4CG277900 Rh4CG278000 Rh4DG235300 Rh4DG262700 Rh4DG262900 Rh4DG263100 Rh6BG409300 Rh6DG401700
rosa_wichuraiana	Rw4G016340 Rw4G019840 Rw4G022570 Rw4G022580 Rw4G022590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	558
AarI	CACCTGC	1 cut(s)	737
Acc36I	ACCTGC	1 cut(s)	737
AccB7I	CCANNNNNTGG	1 cut(s)	514
AccBSI	CCGCTC	1 cut(s)	478
AccI	GTMKAC	1 cut(s)	497
AccII	CGCG	1 cut(s)	756
AccIII	TCCGGA	1 cut(s)	229
AciI	CCGC	4 cut(s)	247, 478, 717, 1018
AcsI	RAATTY	4 cut(s)	210, 341, 602, 673
AcuI	CTGAAG	1 cut(s)	85
AfaI	GTAC	3 cut(s)	178, 254, 848
AfiI	CCNNNNNNNGG	6 cut(s)	277, 373, 416, 514, 857, 978
AflII	CTTAAG	1 cut(s)	439
AflIII	ACRYGT	1 cut(s)	430
AgeI	ACCGGT	1 cut(s)	384
AgsI	TTSAA	1 cut(s)	826
AjiI	CACGTC	1 cut(s)	433
AjnI	CCWGG	1 cut(s)	1007
AloI	GAACNNNNNNTCC	2 cut(s)	581, 613
AluBI	AGCT	5 cut(s)	105, 296, 491, 844, 962
AluI	AGCT	5 cut(s)	105, 296, 491, 844, 962
Alw26I	GTCTC	2 cut(s)	326, 407
Ama87I	CYCGRG	1 cut(s)	857
Aor13HI	TCCGGA	1 cut(s)	229
AoxI	GGCC	1 cut(s)	583
ApeKI	GCWGC	5 cut(s)	105, 296, 735, 788, 841
ApoI	RAATTY	4 cut(s)	210, 341, 602, 673
AsiGI	ACCGGT	1 cut(s)	384
AspLEI	GCGC	4 cut(s)	422, 532, 756, 1017
AspS9I	GGNCC	3 cut(s)	4, 223, 376
AsuC2I	CCSGG	1 cut(s)	567
AsuHPI	GGTGA	2 cut(s)	5, 154
AvaI	CYCGRG	1 cut(s)	857
AvaII	GGWCC	3 cut(s)	4, 223, 376
AxyI	CCTNAGG	1 cut(s)	275
BarI	GAAGNNNNNNTAC	2 cut(s)	830, 862
BbvI	GCAGC	5 cut(s)	92, 283, 747, 775, 853
BccI	CCATC	4 cut(s)	25, 188, 311, 910
BciT130I	CCWGG	1 cut(s)	1009
BcnI	CCSGG	1 cut(s)	567
BcoDI	GTCTC	2 cut(s)	326, 407
BfaI	CTAG	1 cut(s)	215
BfoI	RGCGCY	2 cut(s)	423, 533
BfrI	CTTAAG	1 cut(s)	439
BfuAI	ACCTGC	1 cut(s)	737
BisI	GCNGC	6 cut(s)	106, 297, 736, 789, 842, 1018
BlsI	GCNGC	6 cut(s)	107, 298, 737, 790, 843, 1019
Bme1390I	CCNGG	2 cut(s)	567, 1009
Bme18I	GGWCC	3 cut(s)	4, 223, 376
BmeT110I	CYCGRG	1 cut(s)	857
BmgBI	CACGTC	1 cut(s)	433
BmgT120I	GGNCC	3 cut(s)	4, 223, 376
BmiI	GGNNCC	1 cut(s)	485
BmrFI	CCNGG	2 cut(s)	567, 1009
BmsI	GCATC	1 cut(s)	780
BpmI	CTGGAG	1 cut(s)	487
BpuMI	CCSGG	1 cut(s)	567
BsaAI	YACGTR	1 cut(s)	244
BsaI	GGTCTC	1 cut(s)	326
BsaJI	CCNNGG	3 cut(s)	415, 1007, 1008
BsaWI	WCCGGW	2 cut(s)	229, 384
BsaXI	ACNNNNNCTCC	2 cut(s)	581, 611
Bsc4I	CCNNNNNNNGG	6 cut(s)	277, 373, 416, 514, 857, 978
Bse118I	RCCGGY	2 cut(s)	299, 384
Bse21I	CCTNAGG	1 cut(s)	275
BseAI	TCCGGA	1 cut(s)	229
BseBI	CCWGG	1 cut(s)	1009
BseDI	CCNNGG	3 cut(s)	415, 1007, 1008
BseLI	CCNNNNNNNGG	6 cut(s)	277, 373, 416, 514, 857, 978
BseMII	CTCAG	2 cut(s)	289, 506
BseRI	GAGGAG	4 cut(s)	263, 879, 920, 940
BseXI	GCAGC	5 cut(s)	92, 283, 747, 775, 853
BseYI	CCCAGC	1 cut(s)	487
BsgI	GTGCAG	1 cut(s)	754
Bsh1236I	CGCG	1 cut(s)	756
BshFI	GGCC	1 cut(s)	585
BshTI	ACCGGT	1 cut(s)	384
BsiHKCI	CYCGRG	1 cut(s)	857
BsiSI	CCGG	4 cut(s)	230, 300, 385, 566
BslI	CCNNNNNNNGG	6 cut(s)	277, 373, 416, 514, 857, 978
BsmAI	GTCTC	2 cut(s)	326, 407
BsmI	GAATGC	1 cut(s)	444
BsnI	GGCC	1 cut(s)	585
Bso31I	GGTCTC	1 cut(s)	326
BsoBI	CYCGRG	1 cut(s)	857
Bsp13I	TCCGGA	1 cut(s)	229
Bsp143I	GATC	1 cut(s)	192
BspACI	CCGC	4 cut(s)	247, 478, 717, 1018
BspANI	GGCC	1 cut(s)	585
BspCNI	CTCAG	2 cut(s)	288, 505
BspEI	TCCGGA	1 cut(s)	229
BspFNI	CGCG	1 cut(s)	756
BspLI	GGNNCC	1 cut(s)	485
BspMI	ACCTGC	1 cut(s)	737
BspTI	CTTAAG	1 cut(s)	439
BspTNI	GGTCTC	1 cut(s)	326
BsrBI	CCGCTC	1 cut(s)	478
BsrFI	RCCGGY	2 cut(s)	299, 384
BssAI	RCCGGY	2 cut(s)	299, 384
BssECI	CCNNGG	3 cut(s)	415, 1007, 1008
BssMI	GATC	1 cut(s)	192
Bst2UI	CCWGG	1 cut(s)	1009
BstAFI	CTTAAG	1 cut(s)	439
BstBAI	YACGTR	1 cut(s)	244
BstC8I	GCNNGC	5 cut(s)	54, 301, 715, 733, 793
BstDEI	CTNAG	2 cut(s)	275, 492
BstFNI	CGCG	1 cut(s)	756
BstH2I	RGCGCY	2 cut(s)	423, 533
BstHHI	GCGC	4 cut(s)	422, 532, 756, 1017
BstKTI	GATC	1 cut(s)	195
BstMAI	GTCTC	2 cut(s)	326, 407
BstMBI	GATC	1 cut(s)	192
BstNI	CCWGG	1 cut(s)	1009
BstNSI	RCATGY	2 cut(s)	636, 795
BstSCI	CCNGG	2 cut(s)	565, 1007
BstUI	CGCG	1 cut(s)	756
BstV1I	GCAGC	5 cut(s)	92, 283, 747, 775, 853
Bsu36I	CCTNAGG	1 cut(s)	275
BsuRI	GGCC	1 cut(s)	585
BtrI	CACGTC	1 cut(s)	433
BveI	ACCTGC	1 cut(s)	737
Cac8I	GCNNGC	5 cut(s)	54, 301, 715, 733, 793
CfoI	GCGC	4 cut(s)	422, 532, 756, 1017
Cfr10I	RCCGGY	2 cut(s)	299, 384
Cfr13I	GGNCC	3 cut(s)	4, 223, 376
Csp6I	GTAC	3 cut(s)	177, 253, 847
CspAI	ACCGGT	1 cut(s)	384
CviAII	CATG	5 cut(s)	196, 392, 456, 633, 792
CviQI	GTAC	3 cut(s)	177, 253, 847
DdeI	CTNAG	2 cut(s)	275, 492
DpnI	GATC	1 cut(s)	194
DpnII	GATC	1 cut(s)	192
Eco31I	GGTCTC	1 cut(s)	326
Eco47I	GGWCC	3 cut(s)	4, 223, 376
Eco57I	CTGAAG	1 cut(s)	85
Eco81I	CCTNAGG	1 cut(s)	275
Eco88I	CYCGRG	1 cut(s)	857
EcoO109I	RGGNCCY	1 cut(s)	223
EcoRII	CCWGG	1 cut(s)	1007
FaeI	CATG	5 cut(s)	199, 395, 459, 636, 795
FalI	AAGNNNNNCTT	4 cut(s)	563, 595, 629, 661
FatI	CATG	5 cut(s)	195, 391, 455, 632, 791
FauI	CCCGC	1 cut(s)	240
FblI	GTMKAC	1 cut(s)	497
Fnu4HI	GCNGC	6 cut(s)	106, 297, 736, 789, 842, 1018
Fsp4HI	GCNGC	6 cut(s)	106, 297, 736, 789, 842, 1018
FspBI	CTAG	1 cut(s)	215
GlaI	GCGC	4 cut(s)	421, 531, 755, 1016
GluI	GCNGC	6 cut(s)	106, 297, 736, 789, 842, 1018
GsaI	CCCAGC	1 cut(s)	491
GsuI	CTGGAG	1 cut(s)	487
HaeII	RGCGCY	2 cut(s)	423, 533
HaeIII	GGCC	1 cut(s)	585
HapII	CCGG	4 cut(s)	230, 300, 385, 566
HhaI	GCGC	4 cut(s)	422, 532, 756, 1017
Hin1II	CATG	5 cut(s)	199, 395, 459, 636, 795
Hin6I	GCGC	4 cut(s)	420, 530, 754, 1015
HinP1I	GCGC	4 cut(s)	420, 530, 754, 1015
HincII	GTYRAC	1 cut(s)	498
HindII	GTYRAC	1 cut(s)	498
HpaII	CCGG	4 cut(s)	230, 300, 385, 566
HphI	GGTGA	2 cut(s)	5, 154
Hpy166II	GTNNAC	5 cut(s)	253, 428, 498, 642, 1004
Hpy188I	TCNGA	6 cut(s)	91, 146, 189, 293, 601, 659
Hpy188III	TCNNGA	3 cut(s)	40, 215, 230
Hpy8I	GTNNAC	5 cut(s)	253, 428, 498, 642, 1004
HpyAV	CCTTC	4 cut(s)	214, 236, 602, 867
HpyCH4IV	ACGT	2 cut(s)	243, 432
HpyCH4V	TGCA	4 cut(s)	636, 735, 746, 791
HpyF3I	CTNAG	2 cut(s)	275, 492
HpySE526I	ACGT	2 cut(s)	243, 432
Hsp92II	CATG	5 cut(s)	199, 395, 459, 636, 795
HspAI	GCGC	4 cut(s)	420, 530, 754, 1015
Kpn2I	TCCGGA	1 cut(s)	229
KroI	GCCGGC	1 cut(s)	299
KroNI	GCCGGC	1 cut(s)	301
Kzo9I	GATC	1 cut(s)	192
LmnI	GCTCC	2 cut(s)	293, 660
Lsp1109I	GCAGC	5 cut(s)	92, 283, 747, 775, 853
LweI	GCATC	1 cut(s)	780
MaeI	CTAG	1 cut(s)	215
MaeII	ACGT	2 cut(s)	243, 432
MaeIII	GTNAC	1 cut(s)	387
MalI	GATC	1 cut(s)	194
MbiI	CCGCTC	1 cut(s)	478
MboI	GATC	1 cut(s)	192
MboII	GAAGA	4 cut(s)	142, 164, 322, 967
MluCI	AATT	5 cut(s)	65, 210, 341, 602, 673
MroI	TCCGGA	1 cut(s)	229
MroNI	GCCGGC	1 cut(s)	299
MseI	TTAA	3 cut(s)	60, 339, 440
MslI	CAYNNNNRTG	1 cut(s)	702
MspA1I	CMGCKG	2 cut(s)	105, 844
MspCI	CTTAAG	1 cut(s)	439
MspI	CCGG	4 cut(s)	230, 300, 385, 566
MspR9I	CCNGG	2 cut(s)	567, 1009
Mva1269I	GAATGC	1 cut(s)	444
MvaI	CCWGG	1 cut(s)	1009
MvnI	CGCG	1 cut(s)	756
NaeI	GCCGGC	1 cut(s)	301
NciI	CCSGG	1 cut(s)	567
NdeII	GATC	1 cut(s)	192
NgoMIV	GCCGGC	1 cut(s)	299
NlaIII	CATG	5 cut(s)	199, 395, 459, 636, 795
NlaIV	GGNNCC	1 cut(s)	485
NmeAIII	GCCGAG	1 cut(s)	396
NmuCI	GTSAC	1 cut(s)	387
NspI	RCATGY	2 cut(s)	636, 795
PaeI	GCATGC	1 cut(s)	795
PaqCI	CACCTGC	1 cut(s)	737
PasI	CCCWGGG	1 cut(s)	1008
PcsI	WCGNNNNNNNCGW	1 cut(s)	540
PctI	GAATGC	1 cut(s)	444
PdiI	GCCGGC	1 cut(s)	301
PflMI	CCANNNNNTGG	1 cut(s)	514
PinAI	ACCGGT	1 cut(s)	384
PkrI	GCNGC	6 cut(s)	107, 298, 737, 790, 843, 1019
Ppu21I	YACGTR	1 cut(s)	244
PpuMI	RGGWCCY	1 cut(s)	223
PsiI	TTATAA	1 cut(s)	558
Psp5II	RGGWCCY	1 cut(s)	223
Psp6I	CCWGG	1 cut(s)	1007
PspFI	CCCAGC	1 cut(s)	487
PspGI	CCWGG	1 cut(s)	1007
PspN4I	GGNNCC	1 cut(s)	485
PspPI	GGNCC	3 cut(s)	4, 223, 376
PspPPI	RGGWCCY	1 cut(s)	223
PvuII	CAGCTG	2 cut(s)	105, 844
RsaI	GTAC	3 cut(s)	178, 254, 848
RsaNI	GTAC	3 cut(s)	177, 253, 847
RseI	CAYNNNNRTG	1 cut(s)	702
SalI	GTCGAC	1 cut(s)	496
SaqAI	TTAA	3 cut(s)	60, 339, 440
SatI	GCNGC	6 cut(s)	106, 297, 736, 789, 842, 1018
Sau3AI	GATC	1 cut(s)	192
Sau96I	GGNCC	3 cut(s)	4, 223, 376
ScrFI	CCNGG	2 cut(s)	567, 1009
SfaNI	GCATC	1 cut(s)	780
SinI	GGWCC	3 cut(s)	4, 223, 376
SmiMI	CAYNNNNRTG	1 cut(s)	702
SmlI	CTYRAG	1 cut(s)	439
SmoI	CTYRAG	1 cut(s)	439
SphI	GCATGC	1 cut(s)	795
Sse9I	AATT	5 cut(s)	65, 210, 341, 602, 673
SsiI	CCGC	4 cut(s)	247, 478, 717, 1018
SspMI	CTAG	1 cut(s)	215
StyD4I	CCNGG	2 cut(s)	565, 1007
TaiI	ACGT	2 cut(s)	246, 435
TaqI	TCGA	3 cut(s)	333, 497, 833
TasI	AATT	5 cut(s)	65, 210, 341, 602, 673
TauI	GCSGC	1 cut(s)	1020
Tru1I	TTAA	3 cut(s)	60, 339, 440
Tru9I	TTAA	3 cut(s)	60, 339, 440
TseFI	GTSAC	1 cut(s)	387
TseI	GCWGC	5 cut(s)	105, 296, 735, 788, 841
Tsp45I	GTSAC	1 cut(s)	387
TspDTI	ATGAA	2 cut(s)	165, 851
Van91I	CCANNNNNTGG	1 cut(s)	514
Vha464I	CTTAAG	1 cut(s)	439
VpaK11BI	GGWCC	3 cut(s)	4, 223, 376
XapI	RAATTY	4 cut(s)	210, 341, 602, 673
XbaI	TCTAGA	1 cut(s)	214
XceI	RCATGY	2 cut(s)	636, 795
XmiI	GTMKAC	1 cut(s)	497
XspI	CTAG	1 cut(s)	215

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.