Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0000808

Physical Location & Seq

Genomic Coordinates Reverse (-)

63487225 .. 63487713

Gene Structure 489 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG409300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGGCCTTCACCAGATTCGACGTCATTTCGCACCACTCATACAACTACTACAGTGCCTCCGGCAAGAAGCAGAAATACGGCGGATCCGTCCACAAGTTGATCATGAAGGAGTGGCGGATTCTGGAGAACAATCTCCCCAACTCTATCTACGCGCGCGTGTACGAGACGCGCCTTGATCTTCTCAGAGCCGTCATCGTTGGCGCTGCCGGGACTCCCTACCACGACGCGCTCTTCTTCGATATCAACTTCCAGTCGGACTACTCGACCCAACCGCCCAACGTGCAATACCGCTCCTACGGGTTGCGGGTCAACCCAAATCTTTACGTGAGCGGGTACGTCTGCCTGAGCCTGCTCAGCACCTGGACCGGAAAGAAGAGGGAGAAGTGGGACCCGACTCAGTCCACCGTCCTCCAGGTTCTGGTCTTGATCCAAGCGCTCGTTTTGAACGAGAAGCGATTTGTGTTCTTCTCCATCGCATGGGTGACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0031625 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044424 GO:0044444 GO:0044464 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

162

Amino Acids

18.76

Weight (kDa)

9.52

Isoelectric Point (pI)

26.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	34 - 148	4.6e-17	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000808)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g01260 FvH4_4g19890 FvH4_4g19900 FvH4_4g19910 FvH4_4g23111
malus_domestica	MD16G1152700.v1.1
prunus_persica	Prupe.1G115900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0415111 RchiOBHm_Chr4g0421801 RchiOBHm_Chr4g0425521 RchiOBHm_Chr4g0425551
rosa_laevigata	RLG00000007355 RLG00000007357 RLG00000007358 RLG00000007360 RLG00000007361 RLG00000007364 RLG00000007366 RLG00000007640 RLG00000008097 RLG00000022500
rosa_multiflora	Rmu_co8278857.1_g000001 Rmu_sc0000635.1_g000001 Rmu_sc0000709.1_g000009 Rmu_sc0001900.1_g000008 Rmu_sc0001900.1_g000009 Rmu_sc0003748.1_g000014 Rmu_sc0008440.1_g000003 Rmu_sc0010306.1_g000005 Rmu_sc0012856.1_g000010 Rmu_sc0032188.1_g000001
rosa_roxburghii	Rroxscaffold_5G00364100 Rroxscaffold_5G00367460 Rroxscaffold_5G00367480 Rroxscaffold_5G00367490 Rroxscaffold_5G00367510 Rroxscaffold_5G00371110
rosa_rugosa	Rorug04G0176300 Rorug04G0203700 Rorug04G0203800 Rorug04G0203800 Rorug04G0203900 Rorug06G0289400
rosa_samantha	Rh4AG192100 Rh4AG235200 Rh4AG236000 Rh4AG260700 Rh4AG260900 Rh4BG190000 Rh4BG238700 Rh4BG266400 Rh4BG266600 Rh4BG266700 Rh4CG202900 Rh4CG250700 Rh4CG277700 Rh4CG277900 Rh4CG278000 Rh4DG235300 Rh4DG262700 Rh4DG262900 Rh4DG263100 Rh6BG409300 Rh6DG401700
rosa_wichuraiana	Rw4G016340 Rw4G019840 Rw4G022570 Rw4G022580 Rw4G022590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	24
AccB7I	CCANNNNNTGG	2 cut(s)	418, 477
AccBSI	CCGCTC	2 cut(s)	291, 330
AccII	CGCG	5 cut(s)	152, 154, 156, 169, 227
AciI	CCGC	6 cut(s)	81, 115, 272, 289, 304, 330
AclWI	GGATC	3 cut(s)	78, 91, 421
AcyI	GRCGYC	1 cut(s)	21
AfaI	GTAC	2 cut(s)	161, 335
AfeI	AGCGCT	1 cut(s)	435
AfiI	CCNNNNNNNGG	2 cut(s)	418, 477
AgsI	TTSAA	1 cut(s)	445
AjnI	CCWGG	2 cut(s)	359, 411
Alw26I	GTCTC	1 cut(s)	158
AlwI	GGATC	3 cut(s)	78, 91, 421
AlwNI	CAGNNNCTG	2 cut(s)	360, 418
Aor51HI	AGCGCT	1 cut(s)	435
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	1 cut(s)	203
AspLEI	GCGC	6 cut(s)	154, 156, 171, 203, 229, 436
AspS9I	GGNCC	2 cut(s)	363, 388
AsuC2I	CCSGG	1 cut(s)	208
AvaII	GGWCC	2 cut(s)	363, 388
BamHI	GGATCC	1 cut(s)	83
BarI	GAAGNNNNNNTAC	2 cut(s)	59, 91
BbvI	GCAGC	1 cut(s)	190
BccI	CCATC	1 cut(s)	479
BceAI	ACGGC	2 cut(s)	94, 173
BciT130I	CCWGG	2 cut(s)	361, 413
BclI	TGATCA	1 cut(s)	99
BcnI	CCSGG	1 cut(s)	208
BcoDI	GTCTC	1 cut(s)	158
BfmI	CTRYAG	1 cut(s)	49
BfoI	RGCGCY	2 cut(s)	204, 437
BisI	GCNGC	1 cut(s)	204
BlpI	GCTNAGC	1 cut(s)	353
BlsI	GCNGC	1 cut(s)	205
Bme1390I	CCNGG	3 cut(s)	208, 361, 413
Bme18I	GGWCC	2 cut(s)	363, 388
BmgT120I	GGNCC	2 cut(s)	363, 388
BmiI	GGNNCC	3 cut(s)	85, 389, 390
BmrFI	CCNGG	3 cut(s)	208, 361, 413
BpmI	CTGGAG	2 cut(s)	143, 395
Bpu10I	CCTNAGC	1 cut(s)	344
Bpu1102I	GCTNAGC	1 cut(s)	353
BpuMI	CCSGG	1 cut(s)	208
BsaAI	YACGTR	1 cut(s)	325
BsaHI	GRCGYC	1 cut(s)	21
BsaWI	WCCGGW	1 cut(s)	365
BsaXI	ACNNNNNCTCC	2 cut(s)	41, 71
Bsc4I	CCNNNNNNNGG	2 cut(s)	418, 477
Bse1I	ACTGG	1 cut(s)	250
BseBI	CCWGG	2 cut(s)	361, 413
BseLI	CCNNNNNNNGG	2 cut(s)	418, 477
BseMII	CTCAG	4 cut(s)	196, 335, 367, 410
BseNI	ACTGG	1 cut(s)	250
BsePI	GCGCGC	1 cut(s)	152
BseXI	GCAGC	1 cut(s)	190
Bsh1236I	CGCG	5 cut(s)	152, 154, 156, 169, 227
BshFI	GGCC	1 cut(s)	5
BsiSI	CCGG	3 cut(s)	60, 207, 366
BslFI	GGGAC	2 cut(s)	223, 401
BslI	CCNNNNNNNGG	2 cut(s)	418, 477
BsmAI	GTCTC	1 cut(s)	158
BsmBI	CGTCTC	1 cut(s)	158
BsmFI	GGGAC	2 cut(s)	223, 401
BsnI	GGCC	1 cut(s)	5
Bsp143I	GATC	4 cut(s)	83, 99, 175, 426
Bsp1720I	GCTNAGC	1 cut(s)	353
BspACI	CCGC	6 cut(s)	81, 115, 272, 289, 304, 330
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	4 cut(s)	195, 336, 366, 409
BspFNI	CGCG	5 cut(s)	152, 154, 156, 169, 227
BspHI	TCATGA	1 cut(s)	102
BspLI	GGNNCC	3 cut(s)	85, 389, 390
BspPI	GGATC	3 cut(s)	78, 91, 421
BspQI	GCTCTTC	1 cut(s)	236
BsrBI	CCGCTC	2 cut(s)	291, 330
BsrI	ACTGG	1 cut(s)	250
BssHII	GCGCGC	1 cut(s)	152
BssMI	GATC	4 cut(s)	83, 99, 175, 426
BssNI	GRCGYC	1 cut(s)	21
Bst2UI	CCWGG	2 cut(s)	361, 413
Bst4CI	ACNGT	2 cut(s)	53, 406
Bst6I	CTCTTC	2 cut(s)	236, 368
BstACI	GRCGYC	1 cut(s)	21
BstBAI	YACGTR	1 cut(s)	325
BstC8I	GCNNGC	2 cut(s)	154, 350
BstDEI	CTNAG	4 cut(s)	182, 344, 353, 396
BstFNI	CGCG	5 cut(s)	152, 154, 156, 169, 227
BstH2I	RGCGCY	2 cut(s)	204, 437
BstHHI	GCGC	6 cut(s)	154, 156, 171, 203, 229, 436
BstKTI	GATC	4 cut(s)	86, 102, 178, 429
BstMAI	GTCTC	1 cut(s)	158
BstMBI	GATC	4 cut(s)	83, 99, 175, 426
BstMWI	GCNNNNNNNGC	2 cut(s)	280, 354
BstNI	CCWGG	2 cut(s)	361, 413
BstSCI	CCNGG	3 cut(s)	206, 359, 411
BstSFI	CTRYAG	1 cut(s)	49
BstUI	CGCG	5 cut(s)	152, 154, 156, 169, 227
BstV1I	GCAGC	1 cut(s)	190
BstX2I	RGATCY	1 cut(s)	83
BstYI	RGATCY	1 cut(s)	83
BsuRI	GGCC	1 cut(s)	5
BtgZI	GCGATG	1 cut(s)	457
BtsIMutI	CAGTG	1 cut(s)	58
Cac8I	GCNNGC	2 cut(s)	154, 350
CaiI	CAGNNNCTG	2 cut(s)	360, 418
CciI	TCATGA	1 cut(s)	102
CfoI	GCGC	6 cut(s)	154, 156, 171, 203, 229, 436
Cfr13I	GGNCC	2 cut(s)	363, 388
CseI	GACGC	2 cut(s)	175, 233
Csp6I	GTAC	2 cut(s)	160, 334
CviAII	CATG	2 cut(s)	103, 477
CviJI	RGCY	3 cut(s)	5, 188, 348
CviKI_1	RGCY	3 cut(s)	5, 188, 348
CviQI	GTAC	2 cut(s)	160, 334
DdeI	CTNAG	4 cut(s)	182, 344, 353, 396
DpnI	GATC	4 cut(s)	85, 101, 177, 428
DpnII	GATC	4 cut(s)	83, 99, 175, 426
Eam1104I	CTCTTC	2 cut(s)	236, 368
EarI	CTCTTC	2 cut(s)	236, 368
EciI	GGCGGA	2 cut(s)	96, 130
Eco32I	GATATC	1 cut(s)	241
Eco47I	GGWCC	2 cut(s)	363, 388
Eco47III	AGCGCT	1 cut(s)	435
EcoO109I	RGGNCCY	1 cut(s)	388
EcoRII	CCWGG	2 cut(s)	359, 411
EcoRV	GATATC	1 cut(s)	241
Esp3I	CGTCTC	1 cut(s)	158
FaeI	CATG	2 cut(s)	106, 480
FaiI	YATR	3 cut(s)	40, 104, 478
FaqI	GGGAC	2 cut(s)	223, 401
FatI	CATG	2 cut(s)	102, 476
FauI	CCCGC	2 cut(s)	297, 323
FbaI	TGATCA	1 cut(s)	99
Fnu4HI	GCNGC	1 cut(s)	204
Fsp4HI	GCNGC	1 cut(s)	204
GlaI	GCGC	6 cut(s)	153, 155, 170, 202, 228, 435
GluI	GCNGC	1 cut(s)	204
GsuI	CTGGAG	2 cut(s)	143, 395
HaeII	RGCGCY	2 cut(s)	204, 437
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	3 cut(s)	60, 207, 366
HgaI	GACGC	2 cut(s)	175, 233
HhaI	GCGC	6 cut(s)	154, 156, 171, 203, 229, 436
Hin1I	GRCGYC	1 cut(s)	21
Hin1II	CATG	2 cut(s)	106, 480
Hin6I	GCGC	6 cut(s)	152, 154, 169, 201, 227, 434
HinP1I	GCGC	6 cut(s)	152, 154, 169, 201, 227, 434
HincII	GTYRAC	1 cut(s)	310
HindII	GTYRAC	1 cut(s)	310
HinfI	GANTC	4 cut(s)	15, 118, 211, 394
HpaII	CCGG	3 cut(s)	60, 207, 366
Hpy166II	GTNNAC	4 cut(s)	91, 160, 310, 402
Hpy188I	TCNGA	2 cut(s)	185, 256
Hpy188III	TCNNGA	3 cut(s)	103, 122, 424
Hpy8I	GTNNAC	4 cut(s)	91, 160, 310, 402
Hpy99I	CGWCG	2 cut(s)	23, 227
HpyAV	CCTTC	2 cut(s)	16, 100
HpyCH4III	ACNGT	2 cut(s)	53, 406
HpyCH4IV	ACGT	4 cut(s)	21, 279, 324, 336
HpyCH4V	TGCA	1 cut(s)	283
HpyF10VI	GCNNNNNNNGC	2 cut(s)	280, 354
HpyF3I	CTNAG	4 cut(s)	182, 344, 353, 396
HpySE526I	ACGT	4 cut(s)	21, 279, 324, 336
Hsp92I	GRCGYC	1 cut(s)	21
Hsp92II	CATG	2 cut(s)	106, 480
HspAI	GCGC	6 cut(s)	152, 154, 169, 201, 227, 434
KflI	GGGWCCC	1 cut(s)	388
Ksp22I	TGATCA	1 cut(s)	99
Kzo9I	GATC	4 cut(s)	83, 99, 175, 426
LguI	GCTCTTC	1 cut(s)	236
LmnI	GCTCC	1 cut(s)	296
Lsp1109I	GCAGC	1 cut(s)	190
MaeII	ACGT	4 cut(s)	21, 279, 324, 336
MaeIII	GTNAC	1 cut(s)	481
MalI	GATC	4 cut(s)	85, 101, 177, 428
MauBI	CGCGCGCG	1 cut(s)	152
MbiI	CCGCTC	2 cut(s)	291, 330
MboI	GATC	4 cut(s)	83, 99, 175, 426
MboII	GAAGA	5 cut(s)	170, 223, 226, 385, 457
MflI	RGATCY	1 cut(s)	83
MlyI	GAGTC	2 cut(s)	205, 388
MmeI	TCCRAC	1 cut(s)	234
MnlI	CCTC	3 cut(s)	67, 369, 419
MspI	CCGG	3 cut(s)	60, 207, 366
MspR9I	CCNGG	3 cut(s)	208, 361, 413
MvaI	CCWGG	2 cut(s)	361, 413
MvnI	CGCG	5 cut(s)	152, 154, 156, 169, 227
MwoI	GCNNNNNNNGC	2 cut(s)	280, 354
NciI	CCSGG	1 cut(s)	208
NdeII	GATC	4 cut(s)	83, 99, 175, 426
NlaIII	CATG	2 cut(s)	106, 480
NlaIV	GGNNCC	3 cut(s)	85, 389, 390
NmuCI	GTSAC	1 cut(s)	481
PagI	TCATGA	1 cut(s)	102
PauI	GCGCGC	1 cut(s)	152
PciSI	GCTCTTC	1 cut(s)	236
PcsI	WCGNNNNNNNCGW	3 cut(s)	84, 260, 444
PfeI	GAWTC	2 cut(s)	15, 118
PflFI	GACNNNGTC	1 cut(s)	397
PflMI	CCANNNNNTGG	2 cut(s)	418, 477
PkrI	GCNGC	1 cut(s)	205
PleI	GAGTC	2 cut(s)	205, 388
PpsI	GAGTC	2 cut(s)	205, 388
Ppu21I	YACGTR	1 cut(s)	325
PpuMI	RGGWCCY	1 cut(s)	388
Psp5II	RGGWCCY	1 cut(s)	388
Psp6I	CCWGG	2 cut(s)	359, 411
PspGI	CCWGG	2 cut(s)	359, 411
PspN4I	GGNNCC	3 cut(s)	85, 389, 390
PspPI	GGNCC	2 cut(s)	363, 388
PspPPI	RGGWCCY	1 cut(s)	388
PstNI	CAGNNNCTG	2 cut(s)	360, 418
PsuI	RGATCY	1 cut(s)	83
PsyI	GACNNNGTC	1 cut(s)	397
PteI	GCGCGC	1 cut(s)	152
RsaI	GTAC	2 cut(s)	161, 335
RsaNI	GTAC	2 cut(s)	160, 334
SapI	GCTCTTC	1 cut(s)	236
SatI	GCNGC	1 cut(s)	204
Sau3AI	GATC	4 cut(s)	83, 99, 175, 426
Sau96I	GGNCC	2 cut(s)	363, 388
SchI	GAGTC	2 cut(s)	205, 388
ScrFI	CCNGG	3 cut(s)	208, 361, 413
SetI	ASST	6 cut(s)	24, 282, 327, 339, 362, 417
SfcI	CTRYAG	1 cut(s)	49
SinI	GGWCC	2 cut(s)	363, 388
SsiI	CCGC	6 cut(s)	81, 115, 272, 289, 304, 330
StyD4I	CCNGG	3 cut(s)	206, 359, 411
TaaI	ACNGT	2 cut(s)	53, 406
TaiI	ACGT	4 cut(s)	24, 282, 327, 339
TaqI	TCGA	3 cut(s)	18, 237, 263
TfiI	GAWTC	2 cut(s)	15, 118
TscAI	CASTG	1 cut(s)	58
TseFI	GTSAC	1 cut(s)	481
TseI	GCWGC	1 cut(s)	203
Tsp45I	GTSAC	1 cut(s)	481
TspDTI	ATGAA	1 cut(s)	119
TspGWI	ACGGA	1 cut(s)	76
TspRI	CASTG	1 cut(s)	58
Tth111I	GACNNNGTC	1 cut(s)	397
Van91I	CCANNNNNTGG	2 cut(s)	418, 477
VpaK11BI	GGWCC	2 cut(s)	363, 388
ZraI	GACGTC	1 cut(s)	22

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.