Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0000808

Physical Location & Seq

Genomic Coordinates Forward (+)

48151517 .. 48152491

Gene Structure 975 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG262900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGGCGCCCTTAGTGGAGAGCTTCCACAGATTCGACGTCGTCTCGGACCATTCAGACCACCACTACAGCAACACTGACGGGAACGGAAACAGTTTCACCTGTGGAAGCACAGTGTACAAGAAGATCATGCGCGAGTGGAAAATTCTAAGTAAGCACCTCCCGGACTCGACCTATGTGCGAGTGTACAACACTCGAATCGACCTACTGAGAGCCGTCATTGTTGGAGCAGCCAGCACTCCTTACCACGACGGATTGTTCTTCTTCGACATCAAGTTCCCGTCCAACTACCCGTACCAACCGCCACAGGTCCATTACCATTCCCACGGATTGAGGCTCAATCCGAATCTGTATGAAAGCGGCAAGGTCTGTCTGAGCTTGCTCAATACGTGGTCCGGGAAAAAGAAAGAGATGTGGGATCCAAATCAGTCGACTATCCTCCAAGTGCTGGTGTCTATACAAGGACTGGTTCTGAACGAAAAGCCCTTCTATAATGAACCCTTTCGTCTCCGTATCTTTCAGGAGGAGAACTCCCGTCGTTACAATGAGGACGCGTTTATCAAAACGTGCAAGACGACGTTGTATTTGCTCCAAAAACCGCCCAAGAATTTTGAGCTTTTCACCGCCGACCATTTTCGACAGAGAGCAAACCGGATACTGAGAGCTTGTAACGCTTACACTAACAGTCGTGTGGGAGTCGGGCACTACAGAGATGACAATGAAAATGTAACTAAGGATGACACTAAAGTTAAGGACTCTGCAATTTCAGTTCACCCTGTTTCGACGACATTTATTGATTCGATGGAACAGTTGTACCCGAAACTCGTTGTGGTTTTTAGATGGAATAAGGCCTCAAATTTGGTCGAGCACTTGAATTTGGAGAACGTTACGACGCCGCGGGGGGCTGCAGGCATGCTTTGTCTTCTGCTTTGTTGTGCATTAGTAGCACTGATTTGTTACTTCATGTTTAGGGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0031625 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044424 GO:0044444 GO:0044464 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

324

Amino Acids

37.4

Weight (kDa)

8.89

Isoelectric Point (pI)

33.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	42 - 175	1.1e-24	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000808)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g01260 FvH4_4g19890 FvH4_4g19900 FvH4_4g19910 FvH4_4g23111
malus_domestica	MD16G1152700.v1.1
prunus_persica	Prupe.1G115900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0415111 RchiOBHm_Chr4g0421801 RchiOBHm_Chr4g0425521 RchiOBHm_Chr4g0425551
rosa_laevigata	RLG00000007355 RLG00000007357 RLG00000007358 RLG00000007360 RLG00000007361 RLG00000007364 RLG00000007366 RLG00000007640 RLG00000008097 RLG00000022500
rosa_multiflora	Rmu_co8278857.1_g000001 Rmu_sc0000635.1_g000001 Rmu_sc0000709.1_g000009 Rmu_sc0001900.1_g000008 Rmu_sc0001900.1_g000009 Rmu_sc0003748.1_g000014 Rmu_sc0008440.1_g000003 Rmu_sc0010306.1_g000005 Rmu_sc0012856.1_g000010 Rmu_sc0032188.1_g000001
rosa_roxburghii	Rroxscaffold_5G00364100 Rroxscaffold_5G00367460 Rroxscaffold_5G00367480 Rroxscaffold_5G00367490 Rroxscaffold_5G00367510 Rroxscaffold_5G00371110
rosa_rugosa	Rorug04G0176300 Rorug04G0203700 Rorug04G0203800 Rorug04G0203800 Rorug04G0203900 Rorug06G0289400
rosa_samantha	Rh4AG192100 Rh4AG235200 Rh4AG236000 Rh4AG260700 Rh4AG260900 Rh4BG190000 Rh4BG238700 Rh4BG266400 Rh4BG266600 Rh4BG266700 Rh4CG202900 Rh4CG250700 Rh4CG277700 Rh4CG277900 Rh4CG278000 Rh4DG235300 Rh4DG262700 Rh4DG262900 Rh4DG263100 Rh6BG409300 Rh6DG401700
rosa_wichuraiana	Rw4G016340 Rw4G019840 Rw4G022570 Rw4G022580 Rw4G022590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	39
AccB1I	GGYRCC	1 cut(s)	4
AccB7I	CCANNNNNTGG	1 cut(s)	445
AccI	GTMKAC	1 cut(s)	428
AccII	CGCG	3 cut(s)	132, 551, 895
AciI	CCGC	6 cut(s)	299, 357, 596, 621, 893, 895
AclI	AACGTT	1 cut(s)	882
AclWI	GGATC	2 cut(s)	410, 423
AcsI	RAATTY	4 cut(s)	141, 604, 853, 871
AcyI	GRCGYC	3 cut(s)	5, 36, 890
AfaI	GTAC	4 cut(s)	116, 185, 293, 812
AfiI	CCNNNNNNNGG	1 cut(s)	445
AflIII	ACRYGT	1 cut(s)	549
AgsI	TTSAA	1 cut(s)	871
AluBI	AGCT	4 cut(s)	21, 375, 613, 662
AluI	AGCT	4 cut(s)	21, 375, 613, 662
Alw21I	GWGCWC	1 cut(s)	867
Alw26I	GTCTC	2 cut(s)	46, 509
AlwI	GGATC	2 cut(s)	410, 423
AoxI	GGCC	1 cut(s)	846
ApeKI	GCWGC	2 cut(s)	227, 902
ApoI	RAATTY	4 cut(s)	141, 604, 853, 871
ArsI	GACNNNNNNTTYG	2 cut(s)	565, 597
Asp700I	GAANNNNTTC	1 cut(s)	498
AspLEI	GCGC	2 cut(s)	7, 132
AspS9I	GGNCC	3 cut(s)	46, 307, 390
AsuC2I	CCSGG	2 cut(s)	161, 394
AsuHPI	GGTGA	3 cut(s)	88, 610, 761
AvaII	GGWCC	3 cut(s)	46, 307, 390
BaeGI	GKGCMC	1 cut(s)	702
BaeI	ACNNNNGTAYC	2 cut(s)	794, 827
BamHI	GGATCC	1 cut(s)	415
BanI	GGYRCC	1 cut(s)	4
BbsI	GAAGAC	1 cut(s)	911
Bbv12I	GWGCWC	1 cut(s)	867
BbvI	GCAGC	2 cut(s)	239, 889
BccI	CCATC	2 cut(s)	793, 831
BceAI	ACGGC	1 cut(s)	197
BcgI	CGANNNNNNTGC	2 cut(s)	157, 191
BciVI	GTATCC	1 cut(s)	645
BcnI	CCSGG	2 cut(s)	161, 394
BcoDI	GTCTC	2 cut(s)	46, 509
BfmI	CTRYAG	3 cut(s)	64, 703, 903
BfoI	RGCGCY	1 cut(s)	8
BfuI	GTATCC	1 cut(s)	645
BisI	GCNGC	4 cut(s)	228, 358, 893, 903
BlsI	GCNGC	4 cut(s)	229, 359, 894, 904
Bme1390I	CCNGG	2 cut(s)	161, 394
Bme18I	GGWCC	3 cut(s)	46, 307, 390
BmgT120I	GGNCC	3 cut(s)	46, 307, 390
BmiI	GGNNCC	2 cut(s)	6, 417
BmrFI	CCNGG	2 cut(s)	161, 394
BpiI	GAAGAC	1 cut(s)	911
BplI	GAGNNNNNCTC	2 cut(s)	512, 544
BpuMI	CCSGG	2 cut(s)	161, 394
BsaAI	YACGTR	1 cut(s)	387
BsaBI	GATNNNNATC	1 cut(s)	420
BsaHI	GRCGYC	3 cut(s)	5, 36, 890
BsaJI	CCNNGG	2 cut(s)	322, 893
BsaWI	WCCGGW	1 cut(s)	648
Bsc4I	CCNNNNNNNGG	1 cut(s)	445
Bse1I	ACTGG	1 cut(s)	468
Bse8I	GATNNNNATC	1 cut(s)	420
BseDI	CCNNGG	2 cut(s)	322, 893
BseGI	GGATG	1 cut(s)	739
BseJI	GATNNNNATC	1 cut(s)	420
BseLI	CCNNNNNNNGG	1 cut(s)	445
BseMII	CTCAG	3 cut(s)	197, 362, 647
BseNI	ACTGG	1 cut(s)	468
BseRI	GAGGAG	1 cut(s)	536
BseSI	GKGCMC	1 cut(s)	702
BseXI	GCAGC	2 cut(s)	239, 889
Bsh1236I	CGCG	3 cut(s)	132, 551, 895
BshFI	GGCC	1 cut(s)	848
BshNI	GGYRCC	1 cut(s)	4
BsiHKAI	GWGCWC	1 cut(s)	867
BsiSI	CCGG	3 cut(s)	161, 393, 649
BslI	CCNNNNNNNGG	1 cut(s)	445
BsmAI	GTCTC	2 cut(s)	46, 509
BsmBI	CGTCTC	2 cut(s)	46, 509
BsnI	GGCC	1 cut(s)	848
Bsp1286I	GDGCHC	2 cut(s)	702, 867
Bsp1407I	TGTACA	2 cut(s)	114, 183
Bsp143I	GATC	2 cut(s)	123, 415
BspACI	CCGC	6 cut(s)	299, 357, 596, 621, 893, 895
BspANI	GGCC	1 cut(s)	848
BspCNI	CTCAG	3 cut(s)	198, 363, 648
BspFNI	CGCG	3 cut(s)	132, 551, 895
BspLI	GGNNCC	2 cut(s)	6, 417
BspMAI	CTGCAG	1 cut(s)	907
BspPI	GGATC	2 cut(s)	410, 423
BspT107I	GGYRCC	1 cut(s)	4
BsrGI	TGTACA	2 cut(s)	114, 183
BsrI	ACTGG	1 cut(s)	468
BssECI	CCNNGG	2 cut(s)	322, 893
BssMI	GATC	2 cut(s)	123, 415
BssNI	GRCGYC	3 cut(s)	5, 36, 890
Bst4CI	ACNGT	4 cut(s)	92, 112, 683, 807
BstACI	GRCGYC	3 cut(s)	5, 36, 890
BstAUI	TGTACA	2 cut(s)	114, 183
BstBAI	YACGTR	1 cut(s)	387
BstC8I	GCNNGC	4 cut(s)	232, 377, 907, 911
BstDEI	CTNAG	7 cut(s)	10, 146, 206, 371, 656, 729, 972
BstDSI	CCRYGG	2 cut(s)	322, 893
BstF5I	GGATG	1 cut(s)	739
BstFNI	CGCG	3 cut(s)	132, 551, 895
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	2 cut(s)	7, 132
BstKTI	GATC	2 cut(s)	126, 418
BstMAI	GTCTC	2 cut(s)	46, 509
BstMBI	GATC	2 cut(s)	123, 415
BstMWI	GCNNNNNNNGC	2 cut(s)	668, 941
BstNSI	RCATGY	1 cut(s)	913
BstSCI	CCNGG	2 cut(s)	159, 392
BstSFI	CTRYAG	3 cut(s)	64, 703, 903
BstSLI	GKGCMC	1 cut(s)	702
BstUI	CGCG	3 cut(s)	132, 551, 895
BstV1I	GCAGC	2 cut(s)	239, 889
BstV2I	GAAGAC	1 cut(s)	911
BstX2I	RGATCY	1 cut(s)	415
BstYI	RGATCY	1 cut(s)	415
BsuI	GTATCC	1 cut(s)	645
BsuRI	GGCC	1 cut(s)	848
BtgI	CCRYGG	2 cut(s)	322, 893
BtsCI	GGATG	1 cut(s)	739
BtsIMutI	CAGTG	3 cut(s)	72, 117, 944
Cac8I	GCNNGC	4 cut(s)	232, 377, 907, 911
CfoI	GCGC	2 cut(s)	7, 132
Cfr13I	GGNCC	3 cut(s)	46, 307, 390
Cfr42I	CCGCGG	1 cut(s)	896
CseI	GACGC	2 cut(s)	557, 898
Csp6I	GTAC	4 cut(s)	115, 184, 292, 811
CviAII	CATG	3 cut(s)	127, 910, 961
CviQI	GTAC	4 cut(s)	115, 184, 292, 811
DdeI	CTNAG	7 cut(s)	10, 146, 206, 371, 656, 729, 972
DinI	GGCGCC	1 cut(s)	6
DpnI	GATC	2 cut(s)	125, 417
DpnII	GATC	2 cut(s)	123, 415
Eco147I	AGGCCT	1 cut(s)	848
Eco47I	GGWCC	3 cut(s)	46, 307, 390
EgeI	GGCGCC	1 cut(s)	6
EheI	GGCGCC	1 cut(s)	6
Esp3I	CGTCTC	2 cut(s)	46, 509
FaeI	CATG	3 cut(s)	130, 913, 964
FaiI	YATR	7 cut(s)	128, 174, 351, 455, 489, 911, 962
FatI	CATG	3 cut(s)	126, 909, 960
FauI	CCCGC	1 cut(s)	888
FblI	GTMKAC	1 cut(s)	428
Fnu4HI	GCNGC	4 cut(s)	228, 358, 893, 903
FokI	GGATG	1 cut(s)	746
Fsp4HI	GCNGC	4 cut(s)	228, 358, 893, 903
GlaI	GCGC	2 cut(s)	6, 131
GluI	GCNGC	4 cut(s)	228, 358, 893, 903
HaeII	RGCGCY	1 cut(s)	8
HaeIII	GGCC	1 cut(s)	848
HapII	CCGG	3 cut(s)	161, 393, 649
HgaI	GACGC	2 cut(s)	557, 898
HhaI	GCGC	2 cut(s)	7, 132
Hin1I	GRCGYC	3 cut(s)	5, 36, 890
Hin1II	CATG	3 cut(s)	130, 913, 964
Hin6I	GCGC	2 cut(s)	5, 130
HinP1I	GCGC	2 cut(s)	5, 130
HincII	GTYRAC	1 cut(s)	429
HindII	GTYRAC	1 cut(s)	429
HinfI	GANTC	7 cut(s)	30, 164, 195, 343, 693, 752, 794
HpaII	CCGG	3 cut(s)	161, 393, 649
HphI	GGTGA	3 cut(s)	88, 610, 761
Hpy166II	GTNNAC	4 cut(s)	115, 184, 429, 769
Hpy188I	TCNGA	5 cut(s)	46, 55, 342, 372, 471
Hpy188III	TCNNGA	1 cut(s)	518
Hpy8I	GTNNAC	4 cut(s)	115, 184, 429, 769
Hpy99I	CGWCG	7 cut(s)	38, 41, 251, 537, 577, 784, 892
HpyAV	CCTTC	1 cut(s)	493
HpyCH4III	ACNGT	4 cut(s)	92, 112, 683, 807
HpyCH4IV	ACGT	5 cut(s)	36, 386, 563, 575, 882
HpyCH4V	TGCA	4 cut(s)	567, 758, 905, 935
HpyF10VI	GCNNNNNNNGC	2 cut(s)	668, 941
HpyF3I	CTNAG	7 cut(s)	10, 146, 206, 371, 656, 729, 972
HpySE526I	ACGT	5 cut(s)	36, 386, 563, 575, 882
Hsp92I	GRCGYC	3 cut(s)	5, 36, 890
Hsp92II	CATG	3 cut(s)	130, 913, 964
HspAI	GCGC	2 cut(s)	5, 130
KasI	GGCGCC	1 cut(s)	4
KspI	CCGCGG	1 cut(s)	896
Kzo9I	GATC	2 cut(s)	123, 415
LmnI	GCTCC	2 cut(s)	224, 591
Lsp1109I	GCAGC	2 cut(s)	239, 889
MaeII	ACGT	5 cut(s)	36, 386, 563, 575, 882
MaeIII	GTNAC	5 cut(s)	536, 665, 724, 883, 953
MalI	GATC	2 cut(s)	125, 417
MboI	GATC	2 cut(s)	123, 415
MboII	GAAGA	4 cut(s)	133, 250, 253, 911
MflI	RGATCY	1 cut(s)	415
MhlI	GDGCHC	2 cut(s)	702, 867
MluCI	AATT	5 cut(s)	141, 604, 759, 853, 871
MluI	ACGCGT	1 cut(s)	549
Mly113I	GGCGCC	1 cut(s)	5
MlyI	GAGTC	3 cut(s)	158, 702, 746
MmeI	TCCRAC	2 cut(s)	202, 306
MnlI	CCTC	6 cut(s)	167, 324, 446, 514, 538, 859
MroXI	GAANNNNTTC	1 cut(s)	498
MseI	TTAA	1 cut(s)	747
MspA1I	CMGCKG	1 cut(s)	895
MspI	CCGG	3 cut(s)	161, 393, 649
MspR9I	CCNGG	2 cut(s)	161, 394
MvnI	CGCG	3 cut(s)	132, 551, 895
MwoI	GCNNNNNNNGC	2 cut(s)	668, 941
NarI	GGCGCC	1 cut(s)	5
NciI	CCSGG	2 cut(s)	161, 394
NdeII	GATC	2 cut(s)	123, 415
NlaIII	CATG	3 cut(s)	130, 913, 964
NlaIV	GGNNCC	2 cut(s)	6, 417
NspI	RCATGY	1 cut(s)	913
PaeI	GCATGC	1 cut(s)	913
PceI	AGGCCT	1 cut(s)	848
PcsI	WCGNNNNNNNCGW	1 cut(s)	569
PdmI	GAANNNNTTC	1 cut(s)	498
PfeI	GAWTC	4 cut(s)	30, 195, 343, 794
PflFI	GACNNNGTC	1 cut(s)	38
PflMI	CCANNNNNTGG	1 cut(s)	445
PfoI	TCCNGGA	2 cut(s)	159, 392
PkrI	GCNGC	4 cut(s)	229, 359, 894, 904
PleI	GAGTC	3 cut(s)	158, 701, 746
PluTI	GGCGCC	1 cut(s)	8
PpsI	GAGTC	3 cut(s)	158, 701, 746
Ppu21I	YACGTR	1 cut(s)	387
Psp1406I	AACGTT	1 cut(s)	882
PspN4I	GGNNCC	2 cut(s)	6, 417
PspPI	GGNCC	3 cut(s)	46, 307, 390
PstI	CTGCAG	1 cut(s)	907
PsuI	RGATCY	1 cut(s)	415
PsyI	GACNNNGTC	1 cut(s)	38
RsaI	GTAC	4 cut(s)	116, 185, 293, 812
RsaNI	GTAC	4 cut(s)	115, 184, 292, 811
SacII	CCGCGG	1 cut(s)	896
SalI	GTCGAC	1 cut(s)	427
SaqAI	TTAA	1 cut(s)	747
SatI	GCNGC	4 cut(s)	228, 358, 893, 903
Sau3AI	GATC	2 cut(s)	123, 415
Sau96I	GGNCC	3 cut(s)	46, 307, 390
SchI	GAGTC	3 cut(s)	158, 702, 746
ScrFI	CCNGG	2 cut(s)	161, 394
SduI	GDGCHC	2 cut(s)	702, 867
SfcI	CTRYAG	3 cut(s)	64, 703, 903
SfoI	GGCGCC	1 cut(s)	6
Sfr303I	CCGCGG	1 cut(s)	896
SgrBI	CCGCGG	1 cut(s)	896
SinI	GGWCC	3 cut(s)	46, 307, 390
SphI	GCATGC	1 cut(s)	913
Sse9I	AATT	5 cut(s)	141, 604, 759, 853, 871
SseBI	AGGCCT	1 cut(s)	848
SsiI	CCGC	6 cut(s)	299, 357, 596, 621, 893, 895
SspDI	GGCGCC	1 cut(s)	4
StuI	AGGCCT	1 cut(s)	848
StyD4I	CCNGG	2 cut(s)	159, 392
TaaI	ACNGT	4 cut(s)	92, 112, 683, 807
TaiI	ACGT	5 cut(s)	39, 389, 566, 578, 885
TasI	AATT	5 cut(s)	141, 604, 759, 853, 871
TatI	WGTACW	2 cut(s)	114, 183
TauI	GCSGC	2 cut(s)	360, 895
TfiI	GAWTC	4 cut(s)	30, 195, 343, 794
Tru1I	TTAA	1 cut(s)	747
Tru9I	TTAA	1 cut(s)	747
TscAI	CASTG	3 cut(s)	79, 117, 951
TseI	GCWGC	2 cut(s)	227, 902
TspDTI	ATGAA	4 cut(s)	366, 507, 732, 949
TspGWI	ACGGA	4 cut(s)	99, 264, 339, 497
TspRI	CASTG	3 cut(s)	79, 117, 951
Tth111I	GACNNNGTC	1 cut(s)	38
Van91I	CCANNNNNTGG	1 cut(s)	445
VpaK11BI	GGWCC	3 cut(s)	46, 307, 390
XapI	RAATTY	4 cut(s)	141, 604, 853, 871
XceI	RCATGY	1 cut(s)	913
XmiI	GTMKAC	1 cut(s)	428
XmnI	GAANNNNTTC	1 cut(s)	498
ZraI	GACGTC	1 cut(s)	37

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.