Rw4G022570

Belongs to the ubiquitin-conjugating enzyme family

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
Physical Location & Seq
Forward (+)
48007420 .. 48008397
978 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G022570.1

Sequence Viewer

Length: 978 bp
ATGGCCTCCGTCAACACCAAACCGTCGTTCAAGCAGTTTGACGTCGTTATGGACCACTCAGGCCACCACTACTCGGACAGTAAATGTCGTTTCATCGACAGTACGGTCTATAAGAAGATCACGCGCGAGTGGAGAATTTTGGAGCAGGATCTCCCGGAAACCATATACGTGCGCACGTACGAGACACGTGTCGACCTCCTCAGGGCTGTGATTGTCGGAGCAGAAGGCACACCCTACGAGGGCGGACTCTTCTTCTTCGACATCAAGTTCCCGGATAACTATCCGAACGCACCACCAAAGGTTCATTACCGCTCGCACGGATTGCGGCTTAACCCTAATCTGTACGAGACTGGACATGTTTGCTTGAGCCTACTCAACACGTGGTTTGGCCCGGGGTGGGACTCATCTCAATCCACCATCCTCCAAGTTTTGGTGTCGATCCAAGCGCTTGTTCTCAACGACAAGCCTTACTTTAATGAACCGGGTACTGGGTTTTTCGACCGGTGGTTTGGCATGAAGGATGAGTCCCAAAAATACAGTGGGGACGCGTTTATTTCAACATGCAAGTCAACGTTGTATTTGCTCCGAAATCCACCCAAGAATTTTGAGGCTTTCACTGCCGACCATTTTCGTGGAAGAGCGAGTGGGATTCTGAGAGCGTGCAAGGCTTATGCGAAAGTCGGCTATTACAGCAAGGAGACTGAGGCAAGCCCGTCTTCGGTTTACCTTGTGAAACATTCCAGGAAGTTCAAGGAGTCGATGGAGCAGTTGTACCCACAGCTGGTTGAGGCTTTTAAAAAGAATGAGGCTTCTCGAAAGAACAATCCGGTCAAGGAATTGATGGCAGAGAGGAGTTCGACGAAGTTTGCAGATCAAGTGAAGAAGAAAGCTAAGCCGGCCTTTACTCCGGGCCGGTTATTGTCTTCTGCATTTTTGGTCTCTGTAGCTTTTGTTGTAGTAGTAGTATGTAGAAAGTAA

Protein Analysis

325

Amino Acids

37.07

Weight (kDa)

9.38

Isoelectric Point (pI)

36.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UQ_con PF00179 40 - 153 3.9e-24 Ubiquitin-conjugating enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 104
AatII GACGTC 1 cut(s) 45
Acc16I TGCGCA 1 cut(s) 173
AccB7I CCANNNNNTGG 1 cut(s) 430
AccBSI CCGCTC 1 cut(s) 312
AccI GTMKAC 1 cut(s) 192
AccII CGCG 3 cut(s) 124, 126, 548
AciI CCGC 3 cut(s) 243, 310, 325
AclI AACGTT 1 cut(s) 572
AclWI GGATC 2 cut(s) 156, 433
AcsI RAATTY 2 cut(s) 135, 601
AcvI CACGTG 2 cut(s) 188, 381
AcyI GRCGYC 1 cut(s) 42
AfaI GTAC 5 cut(s) 103, 179, 344, 487, 773
AfeI AGCGCT 1 cut(s) 447
AfiI CCNNNNNNNGG 8 cut(s) 73, 202, 239, 397, 430, 488, 718, 781
AflIII ACRYGT 5 cut(s) 185, 187, 355, 378, 546
AgeI ACCGGT 1 cut(s) 501
AgsI TTSAA 3 cut(s) 31, 558, 751
AjnI CCWGG 1 cut(s) 740
AjuI GAANNNNNNNTTGG 4 cut(s) 11, 43, 435, 467
AluBI AGCT 3 cut(s) 781, 890, 947
AluI AGCT 3 cut(s) 781, 890, 947
Alw26I GTCTC 4 cut(s) 176, 341, 692, 943
AlwI GGATC 2 cut(s) 156, 433
Ama87I CYCGRG 1 cut(s) 391
Aor51HI AGCGCT 1 cut(s) 447
AoxI GGCC 5 cut(s) 3, 61, 388, 897, 910
ApoI RAATTY 2 cut(s) 135, 601
ArsI GACNNNNNNTTYG 2 cut(s) 491, 523
AsiGI ACCGGT 1 cut(s) 501
AspLEI GCGC 3 cut(s) 126, 174, 448
AspS9I GGNCC 3 cut(s) 52, 389, 910
AsuC2I CCSGG 6 cut(s) 155, 272, 392, 393, 483, 909
AvaI CYCGRG 1 cut(s) 391
AvaII GGWCC 1 cut(s) 52
AxyI CCTNAGG 1 cut(s) 200
BbrPI CACGTG 2 cut(s) 188, 381
BbsI GAAGAC 2 cut(s) 708, 915
BccI CCATC 3 cut(s) 425, 754, 835
BciT130I CCWGG 1 cut(s) 742
BcnI CCSGG 6 cut(s) 155, 272, 392, 393, 483, 909
BcoDI GTCTC 4 cut(s) 176, 341, 692, 943
BfmI CTRYAG 1 cut(s) 942
BfoI RGCGCY 1 cut(s) 449
BisI GCNGC 1 cut(s) 326
BlpI GCTNAGC 1 cut(s) 891
BlsI GCNGC 1 cut(s) 327
Bme1390I CCNGG 7 cut(s) 155, 272, 392, 393, 483, 742, 909
Bme18I GGWCC 1 cut(s) 52
BmeT110I CYCGRG 1 cut(s) 391
BmgT120I GGNCC 3 cut(s) 52, 389, 910
BmrFI CCNGG 7 cut(s) 155, 272, 392, 393, 483, 742, 909
BmrI ACTGGG 1 cut(s) 498
BmuI ACTGGG 1 cut(s) 498
BoxI GACNNNNGTC 1 cut(s) 188
BpiI GAAGAC 2 cut(s) 708, 915
Bpu1102I GCTNAGC 1 cut(s) 891
BpuEI CTTGAG 1 cut(s) 385
BpuMI CCSGG 6 cut(s) 155, 272, 392, 393, 483, 909
BsaAI YACGTR 4 cut(s) 169, 177, 188, 381
BsaBI GATNNNNATC 1 cut(s) 279
BsaHI GRCGYC 1 cut(s) 42
BsaI GGTCTC 1 cut(s) 943
BsaJI CCNNGG 2 cut(s) 391, 392
BsaWI WCCGGW 2 cut(s) 501, 826
BsaXI ACNNNNNCTCC 2 cut(s) 755, 785
Bsc4I CCNNNNNNNGG 8 cut(s) 73, 202, 239, 397, 430, 488, 718, 781
Bse118I RCCGGY 3 cut(s) 501, 895, 912
Bse1I ACTGG 2 cut(s) 355, 493
Bse21I CCTNAGG 1 cut(s) 200
Bse8I GATNNNNATC 1 cut(s) 279
BseBI CCWGG 1 cut(s) 742
BseDI CCNNGG 2 cut(s) 391, 392
BseGI GGATG 2 cut(s) 417, 526
BseJI GATNNNNATC 1 cut(s) 279
BseLI CCNNNNNNNGG 8 cut(s) 73, 202, 239, 397, 430, 488, 718, 781
BseMII CTCAG 4 cut(s) 72, 214, 644, 693
BseNI ACTGG 2 cut(s) 355, 493
BseRI GAGGAG 2 cut(s) 188, 865
Bsh1236I CGCG 3 cut(s) 124, 126, 548
Bsh1285I CGRYCG 1 cut(s) 502
BshFI GGCC 5 cut(s) 5, 63, 390, 899, 912
BshTI ACCGGT 1 cut(s) 501
BsiEI CGRYCG 1 cut(s) 502
BsiHKCI CYCGRG 1 cut(s) 391
BsiSI CCGG 9 cut(s) 155, 272, 392, 482, 502, 827, 896, 908, 913
BsiWI CGTACG 1 cut(s) 177
BslFI GGGAC 3 cut(s) 413, 511, 557
BslI CCNNNNNNNGG 8 cut(s) 73, 202, 239, 397, 430, 488, 718, 781
BsmAI GTCTC 4 cut(s) 176, 341, 692, 943
BsmFI GGGAC 3 cut(s) 413, 511, 557
BsnI GGCC 5 cut(s) 5, 63, 390, 899, 912
Bso31I GGTCTC 1 cut(s) 943
BsoBI CYCGRG 1 cut(s) 391
Bsp143I GATC 4 cut(s) 117, 148, 438, 871
Bsp1720I GCTNAGC 1 cut(s) 891
BspACI CCGC 3 cut(s) 243, 310, 325
BspANI GGCC 5 cut(s) 5, 63, 390, 899, 912
BspCNI CTCAG 4 cut(s) 71, 213, 645, 694
BspFNI CGCG 3 cut(s) 124, 126, 548
BspPI GGATC 2 cut(s) 156, 433
BspQI GCTCTTC 1 cut(s) 631
BspTNI GGTCTC 1 cut(s) 943
BsrBI CCGCTC 1 cut(s) 312
BsrFI RCCGGY 3 cut(s) 501, 895, 912
BsrI ACTGG 2 cut(s) 355, 493
BssAI RCCGGY 3 cut(s) 501, 895, 912
BssECI CCNNGG 2 cut(s) 391, 392
BssMI GATC 4 cut(s) 117, 148, 438, 871
BssNI GRCGYC 1 cut(s) 42
Bst2UI CCWGG 1 cut(s) 742
Bst4CI ACNGT 5 cut(s) 24, 80, 101, 106, 539
Bst6I CTCTTC 2 cut(s) 254, 631
BstACI GRCGYC 1 cut(s) 42
BstAPI GCANNNNNTGC 1 cut(s) 322
BstBAI YACGTR 4 cut(s) 169, 177, 188, 381
BstC8I GCNNGC 4 cut(s) 314, 661, 709, 897
BstDEI CTNAG 5 cut(s) 58, 200, 653, 702, 891
BstF5I GGATG 2 cut(s) 417, 526
BstFNI CGCG 3 cut(s) 124, 126, 548
BstH2I RGCGCY 1 cut(s) 449
BstHHI GCGC 3 cut(s) 126, 174, 448
BstKTI GATC 4 cut(s) 120, 151, 441, 874
BstMAI GTCTC 4 cut(s) 176, 341, 692, 943
BstMBI GATC 4 cut(s) 117, 148, 438, 871
BstMCI CGRYCG 1 cut(s) 502
BstMWI GCNNNNNNNGC 5 cut(s) 322, 617, 665, 690, 896
BstNI CCWGG 1 cut(s) 742
BstNSI RCATGY 2 cut(s) 359, 564
BstPAI GACNNNNGTC 1 cut(s) 188
BstSCI CCNGG 7 cut(s) 153, 270, 390, 391, 481, 740, 907
BstSFI CTRYAG 1 cut(s) 942
BstUI CGCG 3 cut(s) 124, 126, 548
BstV2I GAAGAC 2 cut(s) 708, 915
BstX2I RGATCY 1 cut(s) 148
BstXI CCANNNNNNTGG 1 cut(s) 632
BstYI RGATCY 1 cut(s) 148
Bsu36I CCTNAGG 1 cut(s) 200
BsuRI GGCC 5 cut(s) 5, 63, 390, 899, 912
BtsCI GGATG 2 cut(s) 417, 526
BtsI GCAGTG 1 cut(s) 615
BtsIMutI CAGTG 2 cut(s) 544, 615
Cac8I GCNNGC 4 cut(s) 314, 661, 709, 897
CfoI GCGC 3 cut(s) 126, 174, 448
Cfr10I RCCGGY 3 cut(s) 501, 895, 912
Cfr13I GGNCC 3 cut(s) 52, 389, 910
Cfr9I CCCGGG 1 cut(s) 391
CseI GACGC 1 cut(s) 554
Csp6I GTAC 5 cut(s) 102, 178, 343, 486, 772
CspAI ACCGGT 1 cut(s) 501
CviAII CATG 3 cut(s) 356, 514, 561
CviQI GTAC 5 cut(s) 102, 178, 343, 486, 772
DdeI CTNAG 5 cut(s) 58, 200, 653, 702, 891
DpnI GATC 4 cut(s) 119, 150, 440, 873
DpnII GATC 4 cut(s) 117, 148, 438, 871
DraI TTTAAA 1 cut(s) 796
DrdI GACNNNNNNGTC 1 cut(s) 104
DseDI GACNNNNNNGTC 1 cut(s) 104
Eam1104I CTCTTC 2 cut(s) 254, 631
EarI CTCTTC 2 cut(s) 254, 631
EciI GGCGGA 1 cut(s) 258
Eco31I GGTCTC 1 cut(s) 943
Eco47I GGWCC 1 cut(s) 52
Eco47III AGCGCT 1 cut(s) 447
Eco72I CACGTG 2 cut(s) 188, 381
Eco81I CCTNAGG 1 cut(s) 200
Eco88I CYCGRG 1 cut(s) 391
EcoRII CCWGG 1 cut(s) 740
FaeI CATG 3 cut(s) 359, 517, 564
FaiI YATR 9 cut(s) 50, 111, 164, 166, 357, 515, 562, 672, 967
FalI AAGNNNNNCTT 6 cut(s) 455, 487, 700, 732, 884, 916
FaqI GGGAC 3 cut(s) 413, 511, 557
FatI CATG 3 cut(s) 355, 513, 560
FblI GTMKAC 1 cut(s) 192
Fnu4HI GCNGC 1 cut(s) 326
FokI GGATG 2 cut(s) 404, 533
Fsp4HI GCNGC 1 cut(s) 326
FspAI RTGCGCAY 1 cut(s) 173
FspI TGCGCA 1 cut(s) 173
GlaI GCGC 3 cut(s) 125, 173, 447
GluI GCNGC 1 cut(s) 326
HaeII RGCGCY 1 cut(s) 449
HaeIII GGCC 5 cut(s) 5, 63, 390, 899, 912
HapII CCGG 9 cut(s) 155, 272, 392, 482, 502, 827, 896, 908, 913
HgaI GACGC 1 cut(s) 554
HhaI GCGC 3 cut(s) 126, 174, 448
Hin1I GRCGYC 1 cut(s) 42
Hin1II CATG 3 cut(s) 359, 517, 564
Hin6I GCGC 3 cut(s) 124, 172, 446
HinP1I GCGC 3 cut(s) 124, 172, 446
HincII GTYRAC 3 cut(s) 13, 193, 570
HindII GTYRAC 3 cut(s) 13, 193, 570
HinfI GANTC 5 cut(s) 246, 401, 524, 649, 755
HpaII CCGG 9 cut(s) 155, 272, 392, 482, 502, 827, 896, 908, 913
Hpy166II GTNNAC 4 cut(s) 13, 193, 570, 724
Hpy188I TCNGA 5 cut(s) 76, 218, 285, 587, 654
Hpy188III TCNNGA 1 cut(s) 813
Hpy8I GTNNAC 4 cut(s) 13, 193, 570, 724
Hpy99I CGWCG 3 cut(s) 28, 47, 862
HpyAV CCTTC 2 cut(s) 218, 511
HpyCH4III ACNGT 5 cut(s) 24, 80, 101, 106, 539
HpyCH4IV ACGT 6 cut(s) 42, 168, 176, 187, 380, 572
HpyCH4V TGCA 4 cut(s) 564, 663, 869, 929
HpyF10VI GCNNNNNNNGC 5 cut(s) 322, 617, 665, 690, 896
HpyF3I CTNAG 5 cut(s) 58, 200, 653, 702, 891
HpySE526I ACGT 6 cut(s) 42, 168, 176, 187, 380, 572
Hsp92I GRCGYC 1 cut(s) 42
Hsp92II CATG 3 cut(s) 359, 517, 564
HspAI GCGC 3 cut(s) 124, 172, 446
KroI GCCGGC 1 cut(s) 895
KroNI GCCGGC 1 cut(s) 897
Kzo9I GATC 4 cut(s) 117, 148, 438, 871
LguI GCTCTTC 1 cut(s) 631
LmnI GCTCC 4 cut(s) 142, 218, 588, 763
MaeII ACGT 6 cut(s) 42, 168, 176, 187, 380, 572
MalI GATC 4 cut(s) 119, 150, 440, 873
MbiI CCGCTC 1 cut(s) 312
MboI GATC 4 cut(s) 117, 148, 438, 871
MboII GAAGA 9 cut(s) 127, 241, 244, 247, 648, 708, 892, 895, 915
MflI RGATCY 1 cut(s) 148
MluCI AATT 3 cut(s) 135, 601, 836
MluI ACGCGT 1 cut(s) 546
MlyI GAGTC 4 cut(s) 240, 395, 533, 764
MmeI TCCRAC 1 cut(s) 196
MroNI GCCGGC 1 cut(s) 895
MseI TTAA 3 cut(s) 330, 474, 795
MslI CAYNNNNRTG 2 cut(s) 167, 630
MspA1I CMGCKG 1 cut(s) 781
MspI CCGG 9 cut(s) 155, 272, 392, 482, 502, 827, 896, 908, 913
MspR9I CCNGG 7 cut(s) 155, 272, 392, 393, 483, 742, 909
MvaI CCWGG 1 cut(s) 742
MvnI CGCG 3 cut(s) 124, 126, 548
MwoI GCNNNNNNNGC 5 cut(s) 322, 617, 665, 690, 896
NaeI GCCGGC 1 cut(s) 897
NciI CCSGG 6 cut(s) 155, 272, 392, 393, 483, 909
NdeII GATC 4 cut(s) 117, 148, 438, 871
NgoMIV GCCGGC 1 cut(s) 895
NlaIII CATG 3 cut(s) 359, 517, 564
NsbI TGCGCA 1 cut(s) 173
NspI RCATGY 2 cut(s) 359, 564
PciI ACATGT 1 cut(s) 355
PciSI GCTCTTC 1 cut(s) 631
PdiI GCCGGC 1 cut(s) 897
PfeI GAWTC 1 cut(s) 649
Pfl23II CGTACG 1 cut(s) 177
PflMI CCANNNNNTGG 1 cut(s) 430
PfoI TCCNGGA 3 cut(s) 153, 270, 740
PinAI ACCGGT 1 cut(s) 501
PkrI GCNGC 1 cut(s) 327
PleI GAGTC 4 cut(s) 240, 395, 532, 763
PmaCI CACGTG 2 cut(s) 188, 381
PmlI CACGTG 2 cut(s) 188, 381
PpsI GAGTC 4 cut(s) 240, 395, 532, 763
Ppu21I YACGTR 4 cut(s) 169, 177, 188, 381
PscI ACATGT 1 cut(s) 355
PshAI GACNNNNGTC 1 cut(s) 188
Psp1406I AACGTT 1 cut(s) 572
Psp6I CCWGG 1 cut(s) 740
PspCI CACGTG 2 cut(s) 188, 381
PspGI CCWGG 1 cut(s) 740
PspLI CGTACG 1 cut(s) 177
PspPI GGNCC 3 cut(s) 52, 389, 910
PsuI RGATCY 1 cut(s) 148
PvuII CAGCTG 1 cut(s) 781
RsaI GTAC 5 cut(s) 103, 179, 344, 487, 773
RsaNI GTAC 5 cut(s) 102, 178, 343, 486, 772
RseI CAYNNNNRTG 2 cut(s) 167, 630
SalI GTCGAC 1 cut(s) 191
SapI GCTCTTC 1 cut(s) 631
SaqAI TTAA 3 cut(s) 330, 474, 795
SatI GCNGC 1 cut(s) 326
Sau3AI GATC 4 cut(s) 117, 148, 438, 871
Sau96I GGNCC 3 cut(s) 52, 389, 910
SchI GAGTC 4 cut(s) 240, 395, 533, 764
ScrFI CCNGG 7 cut(s) 155, 272, 392, 393, 483, 742, 909
SfcI CTRYAG 1 cut(s) 942
SinI GGWCC 1 cut(s) 52
SmaI CCCGGG 1 cut(s) 393
SmiMI CAYNNNNRTG 2 cut(s) 167, 630
SmlI CTYRAG 1 cut(s) 364
SmoI CTYRAG 1 cut(s) 364
Sse9I AATT 3 cut(s) 135, 601, 836
SsiI CCGC 3 cut(s) 243, 310, 325
StyD4I CCNGG 7 cut(s) 153, 270, 390, 391, 481, 740, 907
TaaI ACNGT 5 cut(s) 24, 80, 101, 106, 539
TaiI ACGT 6 cut(s) 45, 171, 179, 190, 383, 575
TaqI TCGA 8 cut(s) 96, 192, 258, 437, 498, 758, 814, 857
TasI AATT 3 cut(s) 135, 601, 836
TauI GCSGC 1 cut(s) 328
TfiI GAWTC 1 cut(s) 649
Tru1I TTAA 3 cut(s) 330, 474, 795
Tru9I TTAA 3 cut(s) 330, 474, 795
TscAI CASTG 2 cut(s) 544, 622
TspDTI ATGAA 4 cut(s) 82, 293, 492, 530
TspGWI ACGGA 1 cut(s) 333
TspMI CCCGGG 1 cut(s) 391
TspRI CASTG 2 cut(s) 544, 622
Van91I CCANNNNNTGG 1 cut(s) 430
VpaK11BI GGWCC 1 cut(s) 52
XapI RAATTY 2 cut(s) 135, 601
XceI RCATGY 2 cut(s) 359, 564
XcmI CCANNNNNNNNNTGG 1 cut(s) 536
XmaI CCCGGG 1 cut(s) 391
XmiI GTMKAC 1 cut(s) 192
ZraI GACGTC 1 cut(s) 43
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.