Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0000808

Physical Location & Seq

Genomic Coordinates Forward (+)

25584021 .. 25584590

Gene Structure 570 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000008097

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGACCGAACCAACCTTCAAGCAATTCGACATCGTTTCCGATCACTCAGACCACAACTACAGTAAGGAGGAAAAGCAAGGGCAGGGGAAGAAGAACAACAAAAGCGGAGATGGAGATTGTTTCACCAACAGTGGCAGTACTGTATACAAGAAGATCATGCGTGAGTGGAAAAATTTGGAGAATGGTCTCCCAGACACCATCTATGTGCGCGTGTACGAGAAGCGCGTCGACCTGATGAGGGCGGTGATTGTCGGAGCAGCCGGCACACCTTACCACGATGGCCTCTGTTTCTTTGACAATAAGTTTCCGACAAACTATCCGAACCGCCCGCCCCAAGAGCGGTGGGTTTCATCTCAGTCGACGATTCTCCAAGTTCTTGTGTCAATCCAGGCGCTCGTTCTCAATGCCAAGGCCAAGTACCTCTCTTACAACGAGGTTGCTTTTATAAACAAATGCATATCGACGGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0031625 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044424 GO:0044444 GO:0044464 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

157

Amino Acids

17.76

Weight (kDa)

8.69

Isoelectric Point (pI)

34.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	52 - 114	9e-09	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000808)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g01260 FvH4_4g19890 FvH4_4g19900 FvH4_4g19910 FvH4_4g23111
malus_domestica	MD16G1152700.v1.1
prunus_persica	Prupe.1G115900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0415111 RchiOBHm_Chr4g0421801 RchiOBHm_Chr4g0425521 RchiOBHm_Chr4g0425551
rosa_laevigata	RLG00000007355 RLG00000007357 RLG00000007358 RLG00000007360 RLG00000007361 RLG00000007364 RLG00000007366 RLG00000007640 RLG00000008097 RLG00000022500
rosa_multiflora	Rmu_co8278857.1_g000001 Rmu_sc0000635.1_g000001 Rmu_sc0000709.1_g000009 Rmu_sc0001900.1_g000008 Rmu_sc0001900.1_g000009 Rmu_sc0003748.1_g000014 Rmu_sc0008440.1_g000003 Rmu_sc0010306.1_g000005 Rmu_sc0012856.1_g000010 Rmu_sc0032188.1_g000001
rosa_roxburghii	Rroxscaffold_5G00364100 Rroxscaffold_5G00367460 Rroxscaffold_5G00367480 Rroxscaffold_5G00367490 Rroxscaffold_5G00367510 Rroxscaffold_5G00371110
rosa_rugosa	Rorug04G0176300 Rorug04G0203700 Rorug04G0203800 Rorug04G0203800 Rorug04G0203900 Rorug06G0289400
rosa_samantha	Rh4AG192100 Rh4AG235200 Rh4AG236000 Rh4AG260700 Rh4AG260900 Rh4BG190000 Rh4BG238700 Rh4BG266400 Rh4BG266600 Rh4BG266700 Rh4CG202900 Rh4CG250700 Rh4CG277700 Rh4CG277900 Rh4CG278000 Rh4DG235300 Rh4DG262700 Rh4DG262900 Rh4DG263100 Rh6BG409300 Rh6DG401700
rosa_wichuraiana	Rw4G016340 Rw4G019840 Rw4G022570 Rw4G022580 Rw4G022590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	446
AccBSI	CCGCTC	1 cut(s)	340
AccI	GTMKAC	3 cut(s)	144, 228, 359
AccII	CGCG	2 cut(s)	210, 225
AciI	CCGC	5 cut(s)	105, 242, 325, 329, 340
AcsI	RAATTY	1 cut(s)	172
AfaI	GTAC	3 cut(s)	139, 215, 419
AfiI	CCNNNNNNNGG	2 cut(s)	238, 339
AgsI	TTSAA	1 cut(s)	19
AjnI	CCWGG	1 cut(s)	387
Alw26I	GTCTC	1 cut(s)	191
AoxI	GGCC	2 cut(s)	280, 411
ApeKI	GCWGC	1 cut(s)	257
ApoI	RAATTY	1 cut(s)	172
AspLEI	GCGC	3 cut(s)	210, 225, 394
AsuHPI	GGTGA	2 cut(s)	115, 256
BbvI	GCAGC	1 cut(s)	269
BccI	CCATC	3 cut(s)	104, 206, 272
BciT130I	CCWGG	1 cut(s)	389
BcoDI	GTCTC	1 cut(s)	191
BfmI	CTRYAG	1 cut(s)	58
BfoI	RGCGCY	1 cut(s)	395
BisI	GCNGC	1 cut(s)	258
BlsI	GCNGC	1 cut(s)	259
BmcAI	AGTACT	1 cut(s)	139
Bme1390I	CCNGG	1 cut(s)	389
BmrFI	CCNGG	1 cut(s)	389
BsaI	GGTCTC	1 cut(s)	191
BsaJI	CCNNGG	1 cut(s)	408
Bsc4I	CCNNNNNNNGG	2 cut(s)	238, 339
Bse118I	RCCGGY	1 cut(s)	260
BseBI	CCWGG	1 cut(s)	389
BseDI	CCNNGG	1 cut(s)	408
BseLI	CCNNNNNNNGG	2 cut(s)	238, 339
BseMII	CTCAG	2 cut(s)	60, 368
BseXI	GCAGC	1 cut(s)	269
Bsh1236I	CGCG	2 cut(s)	210, 225
BshFI	GGCC	2 cut(s)	282, 413
BsiSI	CCGG	1 cut(s)	261
BslI	CCNNNNNNNGG	2 cut(s)	238, 339
BsmAI	GTCTC	1 cut(s)	191
BsnI	GGCC	2 cut(s)	282, 413
Bso31I	GGTCTC	1 cut(s)	191
Bsp143I	GATC	2 cut(s)	40, 153
BspACI	CCGC	5 cut(s)	105, 242, 325, 329, 340
BspANI	GGCC	2 cut(s)	282, 413
BspCNI	CTCAG	2 cut(s)	59, 367
BspFNI	CGCG	2 cut(s)	210, 225
BspTNI	GGTCTC	1 cut(s)	191
BsrBI	CCGCTC	1 cut(s)	340
BsrFI	RCCGGY	1 cut(s)	260
BssAI	RCCGGY	1 cut(s)	260
BssECI	CCNNGG	1 cut(s)	408
BssMI	GATC	2 cut(s)	40, 153
BssNAI	GTATAC	1 cut(s)	145
BssT1I	CCWWGG	1 cut(s)	408
Bst1107I	GTATAC	1 cut(s)	145
Bst2UI	CCWGG	1 cut(s)	389
Bst4CI	ACNGT	4 cut(s)	62, 131, 142, 466
BstC8I	GCNNGC	2 cut(s)	262, 329
BstDEI	CTNAG	2 cut(s)	46, 354
BstFNI	CGCG	2 cut(s)	210, 225
BstH2I	RGCGCY	1 cut(s)	395
BstHHI	GCGC	3 cut(s)	210, 225, 394
BstKTI	GATC	2 cut(s)	43, 156
BstMAI	GTCTC	1 cut(s)	191
BstMBI	GATC	2 cut(s)	40, 153
BstMWI	GCNNNNNNNGC	1 cut(s)	337
BstNI	CCWGG	1 cut(s)	389
BstSCI	CCNGG	1 cut(s)	387
BstSFI	CTRYAG	1 cut(s)	58
BstUI	CGCG	2 cut(s)	210, 225
BstV1I	GCAGC	1 cut(s)	269
BstZ17I	GTATAC	1 cut(s)	145
BsuRI	GGCC	2 cut(s)	282, 413
BtsIMutI	CAGTG	1 cut(s)	136
Cac8I	GCNNGC	2 cut(s)	262, 329
CfoI	GCGC	3 cut(s)	210, 225, 394
Cfr10I	RCCGGY	1 cut(s)	260
CseI	GACGC	1 cut(s)	214
Csp6I	GTAC	3 cut(s)	138, 214, 418
CspCI	CAANNNNNGTGG	2 cut(s)	323, 358
CviAII	CATG	1 cut(s)	157
CviJI	RGCY	3 cut(s)	260, 282, 413
CviKI_1	RGCY	3 cut(s)	260, 282, 413
CviQI	GTAC	3 cut(s)	138, 214, 418
DdeI	CTNAG	2 cut(s)	46, 354
DpnI	GATC	2 cut(s)	42, 155
DpnII	GATC	2 cut(s)	40, 153
Eco130I	CCWWGG	1 cut(s)	408
Eco31I	GGTCTC	1 cut(s)	191
EcoRII	CCWGG	1 cut(s)	387
EcoT14I	CCWWGG	1 cut(s)	408
EcoT22I	ATGCAT	1 cut(s)	458
ErhI	CCWWGG	1 cut(s)	408
FaeI	CATG	1 cut(s)	160
FaiI	YATR	5 cut(s)	145, 158, 204, 446, 458
FatI	CATG	1 cut(s)	156
FauI	CCCGC	1 cut(s)	336
FblI	GTMKAC	3 cut(s)	144, 228, 359
Fnu4HI	GCNGC	1 cut(s)	258
Fsp4HI	GCNGC	1 cut(s)	258
GlaI	GCGC	3 cut(s)	209, 224, 393
GluI	GCNGC	1 cut(s)	258
HaeII	RGCGCY	1 cut(s)	395
HaeIII	GGCC	2 cut(s)	282, 413
HapII	CCGG	1 cut(s)	261
HgaI	GACGC	1 cut(s)	214
HhaI	GCGC	3 cut(s)	210, 225, 394
Hin1II	CATG	1 cut(s)	160
Hin6I	GCGC	3 cut(s)	208, 223, 392
HinP1I	GCGC	3 cut(s)	208, 223, 392
HincII	GTYRAC	2 cut(s)	229, 360
HindII	GTYRAC	2 cut(s)	229, 360
HinfI	GANTC	1 cut(s)	364
HpaII	CCGG	1 cut(s)	261
HphI	GGTGA	2 cut(s)	115, 256
Hpy166II	GTNNAC	4 cut(s)	145, 214, 229, 360
Hpy188I	TCNGA	5 cut(s)	40, 49, 254, 309, 321
Hpy8I	GTNNAC	4 cut(s)	145, 214, 229, 360
Hpy99I	CGWCG	3 cut(s)	230, 364, 466
HpyAV	CCTTC	1 cut(s)	25
HpyCH4III	ACNGT	4 cut(s)	62, 131, 142, 466
HpyCH4V	TGCA	1 cut(s)	456
HpyF10VI	GCNNNNNNNGC	1 cut(s)	337
HpyF3I	CTNAG	2 cut(s)	46, 354
Hsp92II	CATG	1 cut(s)	160
HspAI	GCGC	3 cut(s)	208, 223, 392
KroI	GCCGGC	1 cut(s)	260
KroNI	GCCGGC	1 cut(s)	262
Kzo9I	GATC	2 cut(s)	40, 153
LmnI	GCTCC	1 cut(s)	254
LpnPI	CCDG	6 cut(s)	68, 204, 245, 274, 374, 401
Lsp1109I	GCAGC	1 cut(s)	269
MalI	GATC	2 cut(s)	42, 155
MbiI	CCGCTC	1 cut(s)	340
MboI	GATC	2 cut(s)	40, 153
MboII	GAAGA	3 cut(s)	100, 103, 163
MluCI	AATT	2 cut(s)	23, 172
MmeI	TCCRAC	2 cut(s)	232, 332
MnlI	CCTC	5 cut(s)	61, 231, 293, 427, 431
Mph1103I	ATGCAT	1 cut(s)	458
MroNI	GCCGGC	1 cut(s)	260
MslI	CAYNNNNRTG	1 cut(s)	203
MspI	CCGG	1 cut(s)	261
MspR9I	CCNGG	1 cut(s)	389
MvaI	CCWGG	1 cut(s)	389
MvnI	CGCG	2 cut(s)	210, 225
MwoI	GCNNNNNNNGC	1 cut(s)	337
NaeI	GCCGGC	1 cut(s)	262
NdeII	GATC	2 cut(s)	40, 153
NgoMIV	GCCGGC	1 cut(s)	260
NlaIII	CATG	1 cut(s)	160
NsiI	ATGCAT	1 cut(s)	458
PcsI	WCGNNNNNNNCGW	1 cut(s)	222
PdiI	GCCGGC	1 cut(s)	262
PfeI	GAWTC	1 cut(s)	364
PkrI	GCNGC	1 cut(s)	259
PsiI	TTATAA	1 cut(s)	446
Psp6I	CCWGG	1 cut(s)	387
PspGI	CCWGG	1 cut(s)	387
RsaI	GTAC	3 cut(s)	139, 215, 419
RsaNI	GTAC	3 cut(s)	138, 214, 418
RseI	CAYNNNNRTG	1 cut(s)	203
SalI	GTCGAC	2 cut(s)	227, 358
SatI	GCNGC	1 cut(s)	258
Sau3AI	GATC	2 cut(s)	40, 153
ScaI	AGTACT	1 cut(s)	139
ScrFI	CCNGG	1 cut(s)	389
SetI	ASST	5 cut(s)	17, 234, 271, 423, 438
SfcI	CTRYAG	1 cut(s)	58
SmiMI	CAYNNNNRTG	1 cut(s)	203
Sse9I	AATT	2 cut(s)	23, 172
SsiI	CCGC	5 cut(s)	105, 242, 325, 329, 340
StyD4I	CCNGG	1 cut(s)	387
StyI	CCWWGG	1 cut(s)	408
TaaI	ACNGT	4 cut(s)	62, 131, 142, 466
TaqI	TCGA	4 cut(s)	27, 228, 359, 461
TaqII	GACCGA	1 cut(s)	20
TasI	AATT	2 cut(s)	23, 172
TatI	WGTACW	1 cut(s)	137
TfiI	GAWTC	1 cut(s)	364
TscAI	CASTG	1 cut(s)	136
TseI	GCWGC	1 cut(s)	257
TspDTI	ATGAA	1 cut(s)	339
TspRI	CASTG	1 cut(s)	136
XapI	RAATTY	1 cut(s)	172
XmiI	GTMKAC	3 cut(s)	144, 228, 359
ZrmI	AGTACT	1 cut(s)	139
Zsp2I	ATGCAT	1 cut(s)	458

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.