Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000808

Physical Location & Seq

Genomic Coordinates Reverse (-)

47447473 .. 47448000

Gene Structure 528 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ39143

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGGCTGTCTTGATTACCAAGCCTGCGTTTAATCAATTTGATGTCGTTTCTAACCATTCAGACCACCACTTCAGCTGCGTGGAAAAGCAGGGAAAGGGGAAGAATAATAACATCGGAGATGAAGATTGTTTCACCAACATCGGCAGTACCATCTACAAGACGATCATGCGTGAATGGAAAATTCTAGAGAAGGACCTTCCGGACACTATCTACGTGCGGGTGTACGATACACGCATTGACCTCCTCAGGGCTGTGATTATCGGAGCTGCCGGCACACCTTACCACGATGGTCTCTTTTTCTTCGACATTAAATTCCCACCTGACTACCCAAAGCACCCCCCAAAGGTCCATTACCGGTCACATGGGTTATGTCTCAACCCAAACCTCGGCGCTGGTGGACACGTCTGCTTAAGCATTCTCAATACATGGATTGGCTGGAGATATGAGCGGTGGAACCCAGCTCAGTCGACAATCCTCCAAGTTTTGGTGTCTATACAGGCGCTCGTTCTCAACGAGAAGCCCTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0031625 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044424 GO:0044444 GO:0044464 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

175

Amino Acids

19.97

Weight (kDa)

7.73

Isoelectric Point (pI)

35.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	55 - 171	4.4e-25	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000808)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g01260 FvH4_4g19890 FvH4_4g19900 FvH4_4g19910 FvH4_4g23111
malus_domestica	MD16G1152700.v1.1
prunus_persica	Prupe.1G115900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0415111 RchiOBHm_Chr4g0421801 RchiOBHm_Chr4g0425521 RchiOBHm_Chr4g0425551
rosa_laevigata	RLG00000007355 RLG00000007357 RLG00000007358 RLG00000007360 RLG00000007361 RLG00000007364 RLG00000007366 RLG00000007640 RLG00000008097 RLG00000022500
rosa_multiflora	Rmu_co8278857.1_g000001 Rmu_sc0000635.1_g000001 Rmu_sc0000709.1_g000009 Rmu_sc0001900.1_g000008 Rmu_sc0001900.1_g000009 Rmu_sc0003748.1_g000014 Rmu_sc0008440.1_g000003 Rmu_sc0010306.1_g000005 Rmu_sc0012856.1_g000010 Rmu_sc0032188.1_g000001
rosa_roxburghii	Rroxscaffold_5G00364100 Rroxscaffold_5G00367460 Rroxscaffold_5G00367480 Rroxscaffold_5G00367490 Rroxscaffold_5G00367510 Rroxscaffold_5G00371110
rosa_rugosa	Rorug04G0176300 Rorug04G0203700 Rorug04G0203800 Rorug04G0203800 Rorug04G0203900 Rorug06G0289400
rosa_samantha	Rh4AG192100 Rh4AG235200 Rh4AG236000 Rh4AG260700 Rh4AG260900 Rh4BG190000 Rh4BG238700 Rh4BG266400 Rh4BG266600 Rh4BG266700 Rh4CG202900 Rh4CG250700 Rh4CG277700 Rh4CG277900 Rh4CG278000 Rh4DG235300 Rh4DG262700 Rh4DG262900 Rh4DG263100 Rh6BG409300 Rh6DG401700
rosa_wichuraiana	Rw4G016340 Rw4G019840 Rw4G022570 Rw4G022580 Rw4G022590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	484
AccBSI	CCGCTC	1 cut(s)	448
AccI	GTMKAC	1 cut(s)	467
AccIII	TCCGGA	1 cut(s)	199
AciI	CCGC	2 cut(s)	217, 448
AcsI	RAATTY	2 cut(s)	180, 311
AcuI	CTGAAG	1 cut(s)	55
AfaI	GTAC	2 cut(s)	148, 224
AfiI	CCNNNNNNNGG	4 cut(s)	247, 343, 386, 484
AflII	CTTAAG	1 cut(s)	409
AflIII	ACRYGT	1 cut(s)	400
AgeI	ACCGGT	1 cut(s)	354
AjiI	CACGTC	1 cut(s)	403
AluBI	AGCT	3 cut(s)	75, 266, 461
AluI	AGCT	3 cut(s)	75, 266, 461
Alw26I	GTCTC	2 cut(s)	296, 377
Aor13HI	TCCGGA	1 cut(s)	199
ApeKI	GCWGC	2 cut(s)	75, 266
ApoI	RAATTY	2 cut(s)	180, 311
AsiGI	ACCGGT	1 cut(s)	354
AspLEI	GCGC	2 cut(s)	392, 502
AspS9I	GGNCC	2 cut(s)	193, 346
AsuHPI	GGTGA	1 cut(s)	124
AvaII	GGWCC	2 cut(s)	193, 346
AxyI	CCTNAGG	1 cut(s)	245
BbvI	GCAGC	2 cut(s)	62, 253
BccI	CCATC	2 cut(s)	158, 281
BcoDI	GTCTC	2 cut(s)	296, 377
BfaI	CTAG	1 cut(s)	185
BfoI	RGCGCY	2 cut(s)	393, 503
BfrI	CTTAAG	1 cut(s)	409
BisI	GCNGC	2 cut(s)	76, 267
BlsI	GCNGC	2 cut(s)	77, 268
Bme18I	GGWCC	2 cut(s)	193, 346
BmgBI	CACGTC	1 cut(s)	403
BmgT120I	GGNCC	2 cut(s)	193, 346
BmiI	GGNNCC	1 cut(s)	455
BpmI	CTGGAG	1 cut(s)	457
BsaAI	YACGTR	1 cut(s)	214
BsaI	GGTCTC	1 cut(s)	296
BsaJI	CCNNGG	1 cut(s)	385
BsaWI	WCCGGW	2 cut(s)	199, 354
Bsc4I	CCNNNNNNNGG	4 cut(s)	247, 343, 386, 484
Bse118I	RCCGGY	2 cut(s)	269, 354
Bse21I	CCTNAGG	1 cut(s)	245
BseAI	TCCGGA	1 cut(s)	199
BseDI	CCNNGG	1 cut(s)	385
BseLI	CCNNNNNNNGG	4 cut(s)	247, 343, 386, 484
BseMII	CTCAG	2 cut(s)	259, 476
BseRI	GAGGAG	1 cut(s)	233
BseXI	GCAGC	2 cut(s)	62, 253
BseYI	CCCAGC	1 cut(s)	457
BshTI	ACCGGT	1 cut(s)	354
BsiSI	CCGG	3 cut(s)	200, 270, 355
BslI	CCNNNNNNNGG	4 cut(s)	247, 343, 386, 484
BsmAI	GTCTC	2 cut(s)	296, 377
BsmI	GAATGC	1 cut(s)	414
Bso31I	GGTCTC	1 cut(s)	296
Bsp13I	TCCGGA	1 cut(s)	199
Bsp143I	GATC	1 cut(s)	162
BspACI	CCGC	2 cut(s)	217, 448
BspCNI	CTCAG	2 cut(s)	258, 475
BspEI	TCCGGA	1 cut(s)	199
BspLI	GGNNCC	1 cut(s)	455
BspTI	CTTAAG	1 cut(s)	409
BspTNI	GGTCTC	1 cut(s)	296
BsrBI	CCGCTC	1 cut(s)	448
BsrFI	RCCGGY	2 cut(s)	269, 354
BssAI	RCCGGY	2 cut(s)	269, 354
BssECI	CCNNGG	1 cut(s)	385
BssMI	GATC	1 cut(s)	162
BstAFI	CTTAAG	1 cut(s)	409
BstBAI	YACGTR	1 cut(s)	214
BstC8I	GCNNGC	2 cut(s)	24, 271
BstDEI	CTNAG	2 cut(s)	245, 462
BstH2I	RGCGCY	2 cut(s)	393, 503
BstHHI	GCGC	2 cut(s)	392, 502
BstKTI	GATC	1 cut(s)	165
BstMAI	GTCTC	2 cut(s)	296, 377
BstMBI	GATC	1 cut(s)	162
BstV1I	GCAGC	2 cut(s)	62, 253
Bsu36I	CCTNAGG	1 cut(s)	245
BtrI	CACGTC	1 cut(s)	403
Cac8I	GCNNGC	2 cut(s)	24, 271
CfoI	GCGC	2 cut(s)	392, 502
Cfr10I	RCCGGY	2 cut(s)	269, 354
Cfr13I	GGNCC	2 cut(s)	193, 346
Csp6I	GTAC	2 cut(s)	147, 223
CspAI	ACCGGT	1 cut(s)	354
CviAII	CATG	3 cut(s)	166, 362, 426
CviJI	RGCY	8 cut(s)	5, 22, 75, 251, 266, 435, 461, 520
CviKI_1	RGCY	8 cut(s)	5, 22, 75, 251, 266, 435, 461, 520
CviQI	GTAC	2 cut(s)	147, 223
DdeI	CTNAG	2 cut(s)	245, 462
DpnI	GATC	1 cut(s)	164
DpnII	GATC	1 cut(s)	162
Eco31I	GGTCTC	1 cut(s)	296
Eco47I	GGWCC	2 cut(s)	193, 346
Eco57I	CTGAAG	1 cut(s)	55
Eco81I	CCTNAGG	1 cut(s)	245
EcoO109I	RGGNCCY	1 cut(s)	193
FaeI	CATG	3 cut(s)	169, 365, 429
FaiI	YATR	6 cut(s)	167, 363, 370, 427, 444, 494
FatI	CATG	3 cut(s)	165, 361, 425
FauI	CCCGC	1 cut(s)	210
FblI	GTMKAC	1 cut(s)	467
Fnu4HI	GCNGC	2 cut(s)	76, 267
Fsp4HI	GCNGC	2 cut(s)	76, 267
FspBI	CTAG	1 cut(s)	185
GlaI	GCGC	2 cut(s)	391, 501
GluI	GCNGC	2 cut(s)	76, 267
GsaI	CCCAGC	1 cut(s)	461
GsuI	CTGGAG	1 cut(s)	457
HaeII	RGCGCY	2 cut(s)	393, 503
HapII	CCGG	3 cut(s)	200, 270, 355
HhaI	GCGC	2 cut(s)	392, 502
Hin1II	CATG	3 cut(s)	169, 365, 429
Hin6I	GCGC	2 cut(s)	390, 500
HinP1I	GCGC	2 cut(s)	390, 500
HincII	GTYRAC	1 cut(s)	468
HindII	GTYRAC	1 cut(s)	468
HpaII	CCGG	3 cut(s)	200, 270, 355
HphI	GGTGA	1 cut(s)	124
Hpy166II	GTNNAC	3 cut(s)	223, 398, 468
Hpy188I	TCNGA	3 cut(s)	61, 116, 263
Hpy188III	TCNNGA	3 cut(s)	10, 185, 200
Hpy8I	GTNNAC	3 cut(s)	223, 398, 468
HpyAV	CCTTC	2 cut(s)	184, 206
HpyCH4IV	ACGT	2 cut(s)	213, 402
HpyF3I	CTNAG	2 cut(s)	245, 462
HpySE526I	ACGT	2 cut(s)	213, 402
Hsp92II	CATG	3 cut(s)	169, 365, 429
HspAI	GCGC	2 cut(s)	390, 500
Kpn2I	TCCGGA	1 cut(s)	199
KroI	GCCGGC	1 cut(s)	269
KroNI	GCCGGC	1 cut(s)	271
Kzo9I	GATC	1 cut(s)	162
LmnI	GCTCC	1 cut(s)	263
Lsp1109I	GCAGC	2 cut(s)	62, 253
MaeI	CTAG	1 cut(s)	185
MaeII	ACGT	2 cut(s)	213, 402
MaeIII	GTNAC	1 cut(s)	357
MalI	GATC	1 cut(s)	164
MbiI	CCGCTC	1 cut(s)	448
MboI	GATC	1 cut(s)	162
MboII	GAAGA	3 cut(s)	112, 134, 292
MluCI	AATT	3 cut(s)	35, 180, 311
MnlI	CCTC	4 cut(s)	251, 254, 395, 485
MroI	TCCGGA	1 cut(s)	199
MroNI	GCCGGC	1 cut(s)	269
MseI	TTAA	4 cut(s)	30, 309, 410, 526
MspA1I	CMGCKG	1 cut(s)	75
MspCI	CTTAAG	1 cut(s)	409
MspI	CCGG	3 cut(s)	200, 270, 355
Mva1269I	GAATGC	1 cut(s)	414
NaeI	GCCGGC	1 cut(s)	271
NdeII	GATC	1 cut(s)	162
NgoMIV	GCCGGC	1 cut(s)	269
NlaIII	CATG	3 cut(s)	169, 365, 429
NlaIV	GGNNCC	1 cut(s)	455
NmeAIII	GCCGAG	1 cut(s)	366
NmuCI	GTSAC	1 cut(s)	357
PcsI	WCGNNNNNNNCGW	1 cut(s)	510
PctI	GAATGC	1 cut(s)	414
PdiI	GCCGGC	1 cut(s)	271
PflMI	CCANNNNNTGG	1 cut(s)	484
PinAI	ACCGGT	1 cut(s)	354
PkrI	GCNGC	2 cut(s)	77, 268
Ppu21I	YACGTR	1 cut(s)	214
PpuMI	RGGWCCY	1 cut(s)	193
Psp5II	RGGWCCY	1 cut(s)	193
PspFI	CCCAGC	1 cut(s)	457
PspN4I	GGNNCC	1 cut(s)	455
PspPI	GGNCC	2 cut(s)	193, 346
PspPPI	RGGWCCY	1 cut(s)	193
PvuII	CAGCTG	1 cut(s)	75
RsaI	GTAC	2 cut(s)	148, 224
RsaNI	GTAC	2 cut(s)	147, 223
SalI	GTCGAC	1 cut(s)	466
SaqAI	TTAA	4 cut(s)	30, 309, 410, 526
SatI	GCNGC	2 cut(s)	76, 267
Sau3AI	GATC	1 cut(s)	162
Sau96I	GGNCC	2 cut(s)	193, 346
SinI	GGWCC	2 cut(s)	193, 346
SmlI	CTYRAG	1 cut(s)	409
SmoI	CTYRAG	1 cut(s)	409
Sse9I	AATT	3 cut(s)	35, 180, 311
SsiI	CCGC	2 cut(s)	217, 448
SspMI	CTAG	1 cut(s)	185
TaiI	ACGT	2 cut(s)	216, 405
TaqI	TCGA	2 cut(s)	303, 467
TasI	AATT	3 cut(s)	35, 180, 311
Tru1I	TTAA	4 cut(s)	30, 309, 410, 526
Tru9I	TTAA	4 cut(s)	30, 309, 410, 526
TseFI	GTSAC	1 cut(s)	357
TseI	GCWGC	2 cut(s)	75, 266
Tsp45I	GTSAC	1 cut(s)	357
TspDTI	ATGAA	1 cut(s)	135
Van91I	CCANNNNNTGG	1 cut(s)	484
Vha464I	CTTAAG	1 cut(s)	409
VpaK11BI	GGWCC	2 cut(s)	193, 346
XapI	RAATTY	2 cut(s)	180, 311
XbaI	TCTAGA	1 cut(s)	184
XmiI	GTMKAC	1 cut(s)	467
XspI	CTAG	1 cut(s)	185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.