Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0000808

Physical Location & Seq

Genomic Coordinates Reverse (-)

54107590 .. 54109718

Gene Structure 2129 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG236000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGGCCGAACCTGCGTTCAAGAAATTTGACATCGTTTCGGACCACTCAGACCACTACTACAGCACCGTGAAAAAGCATGGGAAAGGAAAGAACAACAACGGAGATGGACATAGTTTCATCAATGGCAGTACAGTCTACAAGAATATCATGCGCGAGTGGAAAATCTTGGAGAAGAACCTCCCAGACACCATCTACGTGCGCGCGTACGAGACCCGTGTCGACCTTATGAGGGCTGTGATTATCGGAGCAGCTGACACACCTTATCAGGATGGACTCTTCTTCTTTGACATCAAGTTTCCGCCGGACTACCCTGACCACCCGCCCCATGTCTACTACCGATCGCATGGTCTGTCTCTCAACCCAAACCTAGGATCAAATGGATACATCTGTTTAAGCCTTCTCAACACGTGGATTGGGTGGAGGAGTGAGCGGTGGCACTTATCTAGGTCGACGATCCTCCAAGTTTTGGTGTCGATTCAGGGACTCGTTCTCAACGAGAGACCCTATTATAACGAGGCGGGTCTGGGTTTTTTTGACAGGAATATCCTTAGACATCTTACAGAGTATCGATACAAAACTTACAACGCAAAGGCGTTTGTATTAACGTGCCAGTCGACGCTGTATTTACTAAAGAATCCACCAAAGAATTTTGAGTCTTTCATCGCCGAACACTTTCGTCAGAGAGCCAGTGGCATACTGAGAGCGAGTGGTTTGTTAGAAGGATATTATGTGACCATGCGCTTGCGTTTTTCAAATGGGACTTCACAGTATACTTCAATGGAGCTTTTGTACCCGGAACTCGTCGAGGCTTTTAGAAAGAATGGTTGGGTGGAGGAGGACTTGCAGGTGGTAGAGGAGAGTTCAACGCAGTTGGCGGATCAAGTGGAGAGGAAAGCTAAGCTGCCCTTTTCATGGCTGTTTTGTTGTTTACCTTGGTTATCCTGGGCCGCTAATAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0031625 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044424 GO:0044444 GO:0044464 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

319

Amino Acids

37.06

Weight (kDa)

8.49

Isoelectric Point (pI)

33.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	49 - 165	7.7e-21	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000808)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g01260 FvH4_4g19890 FvH4_4g19900 FvH4_4g19910 FvH4_4g23111
malus_domestica	MD16G1152700.v1.1
prunus_persica	Prupe.1G115900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0415111 RchiOBHm_Chr4g0421801 RchiOBHm_Chr4g0425521 RchiOBHm_Chr4g0425551
rosa_laevigata	RLG00000007355 RLG00000007357 RLG00000007358 RLG00000007360 RLG00000007361 RLG00000007364 RLG00000007366 RLG00000007640 RLG00000008097 RLG00000022500
rosa_multiflora	Rmu_co8278857.1_g000001 Rmu_sc0000635.1_g000001 Rmu_sc0000709.1_g000009 Rmu_sc0001900.1_g000008 Rmu_sc0001900.1_g000009 Rmu_sc0003748.1_g000014 Rmu_sc0008440.1_g000003 Rmu_sc0010306.1_g000005 Rmu_sc0012856.1_g000010 Rmu_sc0032188.1_g000001
rosa_roxburghii	Rroxscaffold_5G00364100 Rroxscaffold_5G00367460 Rroxscaffold_5G00367480 Rroxscaffold_5G00367490 Rroxscaffold_5G00367510 Rroxscaffold_5G00371110
rosa_rugosa	Rorug04G0176300 Rorug04G0203700 Rorug04G0203800 Rorug04G0203800 Rorug04G0203900 Rorug06G0289400
rosa_samantha	Rh4AG192100 Rh4AG235200 Rh4AG236000 Rh4AG260700 Rh4AG260900 Rh4BG190000 Rh4BG238700 Rh4BG266400 Rh4BG266600 Rh4BG266700 Rh4CG202900 Rh4CG250700 Rh4CG277700 Rh4CG277900 Rh4CG278000 Rh4DG235300 Rh4DG262700 Rh4DG262900 Rh4DG263100 Rh6BG409300 Rh6DG401700
rosa_wichuraiana	Rw4G016340 Rw4G019840 Rw4G022570 Rw4G022580 Rw4G022590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	510
AarI	CACCTGC	1 cut(s)	835
Acc36I	ACCTGC	2 cut(s)	19, 835
AccB7I	CCANNNNNTGG	1 cut(s)	466
AccBSI	CCGCTC	1 cut(s)	430
AccI	GTMKAC	6 cut(s)	135, 219, 330, 449, 614, 770
AccII	CGCG	3 cut(s)	153, 201, 203
AciI	CCGC	6 cut(s)	299, 320, 430, 518, 875, 948
AclWI	GGATC	3 cut(s)	379, 448, 885
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	2 cut(s)	23, 646
AcvI	CACGTG	1 cut(s)	408
AfaI	GTAC	3 cut(s)	130, 206, 791
AfiI	CCNNNNNNNGG	4 cut(s)	229, 368, 466, 912
AflIII	ACRYGT	1 cut(s)	405
AgsI	TTSAA	4 cut(s)	19, 753, 777, 864
AjnI	CCWGG	1 cut(s)	941
AjuI	GAANNNNNNNTTGG	2 cut(s)	808, 840
AluBI	AGCT	4 cut(s)	251, 784, 896, 901
AluI	AGCT	4 cut(s)	251, 784, 896, 901
Alw26I	GTCTC	3 cut(s)	203, 357, 493
AlwI	GGATC	3 cut(s)	379, 448, 885
AoxI	GGCC	2 cut(s)	3, 945
ApeKI	GCWGC	2 cut(s)	248, 901
ApoI	RAATTY	2 cut(s)	23, 646
Asp700I	GAANNNNTTC	1 cut(s)	672
AspA2I	CCTAGG	1 cut(s)	367
AspLEI	GCGC	4 cut(s)	153, 201, 203, 741
AspS9I	GGNCC	2 cut(s)	40, 945
AsuC2I	CCSGG	1 cut(s)	794
AvaII	GGWCC	1 cut(s)	40
AvrII	CCTAGG	1 cut(s)	367
BaeI	ACNNNNGTAYC	2 cut(s)	373, 406
BbrPI	CACGTG	1 cut(s)	408
BbvI	GCAGC	2 cut(s)	260, 888
BccI	CCATC	3 cut(s)	98, 197, 263
BciT130I	CCWGG	1 cut(s)	943
BciVI	GTATCC	1 cut(s)	374
BcnI	CCSGG	1 cut(s)	794
BcoDI	GTCTC	3 cut(s)	203, 357, 493
BfaI	CTAG	2 cut(s)	368, 444
BfmI	CTRYAG	1 cut(s)	58
BfuAI	ACCTGC	2 cut(s)	19, 835
BfuI	GTATCC	1 cut(s)	374
BisI	GCNGC	3 cut(s)	249, 902, 948
BlnI	CCTAGG	1 cut(s)	367
BlpI	GCTNAGC	1 cut(s)	897
BlsI	GCNGC	3 cut(s)	250, 903, 949
Bme1390I	CCNGG	2 cut(s)	794, 943
Bme18I	GGWCC	1 cut(s)	40
BmgT120I	GGNCC	2 cut(s)	40, 945
BmrFI	CCNGG	2 cut(s)	794, 943
BoxI	GACNNNNGTC	1 cut(s)	215
Bpu1102I	GCTNAGC	1 cut(s)	897
BpuMI	CCSGG	1 cut(s)	794
Bsa29I	ATCGAT	1 cut(s)	568
BsaAI	YACGTR	2 cut(s)	196, 408
BsaI	GGTCTC	2 cut(s)	203, 493
BsaJI	CCNNGG	3 cut(s)	367, 932, 942
BsaXI	ACNNNNNCTCC	2 cut(s)	773, 803
Bsc4I	CCNNNNNNNGG	4 cut(s)	229, 368, 466, 912
Bse1I	ACTGG	2 cut(s)	610, 687
BseBI	CCWGG	1 cut(s)	943
BseCI	ATCGAT	1 cut(s)	568
BseDI	CCNNGG	3 cut(s)	367, 932, 942
BseGI	GGATG	1 cut(s)	274
BseLI	CCNNNNNNNGG	4 cut(s)	229, 368, 466, 912
BseMII	CTCAG	2 cut(s)	60, 689
BseNI	ACTGG	2 cut(s)	610, 687
BsePI	GCGCGC	1 cut(s)	199
BseRI	GAGGAG	3 cut(s)	436, 848, 869
BseXI	GCAGC	2 cut(s)	260, 888
Bsh1236I	CGCG	3 cut(s)	153, 201, 203
Bsh1285I	CGRYCG	1 cut(s)	341
BshFI	GGCC	2 cut(s)	5, 947
BshVI	ATCGAT	1 cut(s)	568
BsiEI	CGRYCG	1 cut(s)	341
BsiSI	CCGG	2 cut(s)	302, 794
BsiWI	CGTACG	1 cut(s)	204
BslFI	GGGAC	2 cut(s)	495, 772
BslI	CCNNNNNNNGG	4 cut(s)	229, 368, 466, 912
BsmAI	GTCTC	3 cut(s)	203, 357, 493
BsmFI	GGGAC	2 cut(s)	495, 772
BsnI	GGCC	2 cut(s)	5, 947
Bso31I	GGTCTC	2 cut(s)	203, 493
Bsp143I	GATC	4 cut(s)	338, 371, 453, 877
Bsp1720I	GCTNAGC	1 cut(s)	897
BspACI	CCGC	6 cut(s)	299, 320, 430, 518, 875, 948
BspANI	GGCC	2 cut(s)	5, 947
BspCNI	CTCAG	2 cut(s)	59, 690
BspDI	ATCGAT	1 cut(s)	568
BspFNI	CGCG	3 cut(s)	153, 201, 203
BspMI	ACCTGC	2 cut(s)	19, 835
BspPI	GGATC	3 cut(s)	379, 448, 885
BspTNI	GGTCTC	2 cut(s)	203, 493
BsrBI	CCGCTC	1 cut(s)	430
BsrI	ACTGG	2 cut(s)	610, 687
BssECI	CCNNGG	3 cut(s)	367, 932, 942
BssHII	GCGCGC	1 cut(s)	199
BssMI	GATC	4 cut(s)	338, 371, 453, 877
BssNAI	GTATAC	1 cut(s)	771
BssT1I	CCWWGG	2 cut(s)	367, 932
Bst1107I	GTATAC	1 cut(s)	771
Bst2UI	CCWGG	1 cut(s)	943
Bst4CI	ACNGT	3 cut(s)	67, 133, 768
Bst6I	CTCTTC	1 cut(s)	281
BstBAI	YACGTR	2 cut(s)	196, 408
BstC8I	GCNNGC	2 cut(s)	201, 743
BstDEI	CTNAG	4 cut(s)	46, 548, 698, 897
BstF5I	GGATG	1 cut(s)	274
BstFNI	CGCG	3 cut(s)	153, 201, 203
BstHHI	GCGC	4 cut(s)	153, 201, 203, 741
BstKTI	GATC	4 cut(s)	341, 374, 456, 880
BstMAI	GTCTC	3 cut(s)	203, 357, 493
BstMBI	GATC	4 cut(s)	338, 371, 453, 877
BstMCI	CGRYCG	1 cut(s)	341
BstMWI	GCNNNNNNNGC	1 cut(s)	11
BstNI	CCWGG	1 cut(s)	943
BstPAI	GACNNNNGTC	1 cut(s)	215
BstSCI	CCNGG	2 cut(s)	792, 941
BstSFI	CTRYAG	1 cut(s)	58
BstUI	CGCG	3 cut(s)	153, 201, 203
BstV1I	GCAGC	2 cut(s)	260, 888
BstZ17I	GTATAC	1 cut(s)	771
Bsu15I	ATCGAT	1 cut(s)	568
BsuI	GTATCC	1 cut(s)	374
BsuRI	GGCC	2 cut(s)	5, 947
BsuTUI	ATCGAT	1 cut(s)	568
BtgZI	GCGATG	1 cut(s)	646
BtsCI	GGATG	1 cut(s)	274
BtsIMutI	CAGTG	1 cut(s)	694
BveI	ACCTGC	2 cut(s)	19, 835
Cac8I	GCNNGC	2 cut(s)	201, 743
CfoI	GCGC	4 cut(s)	153, 201, 203, 741
Cfr13I	GGNCC	2 cut(s)	40, 945
ClaI	ATCGAT	1 cut(s)	568
CseI	GACGC	1 cut(s)	625
Csp6I	GTAC	3 cut(s)	129, 205, 790
CviAII	CATG	6 cut(s)	77, 148, 326, 344, 736, 912
CviQI	GTAC	3 cut(s)	129, 205, 790
DdeI	CTNAG	4 cut(s)	46, 548, 698, 897
DpnI	GATC	4 cut(s)	340, 373, 455, 879
DpnII	GATC	4 cut(s)	338, 371, 453, 877
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	281
EarI	CTCTTC	1 cut(s)	281
EciI	GGCGGA	2 cut(s)	288, 890
Eco130I	CCWWGG	2 cut(s)	367, 932
Eco31I	GGTCTC	2 cut(s)	203, 493
Eco47I	GGWCC	1 cut(s)	40
Eco72I	CACGTG	1 cut(s)	408
EcoRII	CCWGG	1 cut(s)	941
EcoT14I	CCWWGG	2 cut(s)	367, 932
ErhI	CCWWGG	2 cut(s)	367, 932
FaeI	CATG	6 cut(s)	80, 151, 329, 347, 739, 915
FalI	AAGNNNNNCTT	2 cut(s)	890, 922
FaqI	GGGAC	2 cut(s)	495, 772
FatI	CATG	6 cut(s)	76, 147, 325, 343, 735, 911
FauI	CCCGC	2 cut(s)	327, 511
FblI	GTMKAC	6 cut(s)	135, 219, 330, 449, 614, 770
Fnu4HI	GCNGC	3 cut(s)	249, 902, 948
FokI	GGATG	1 cut(s)	281
Fsp4HI	GCNGC	3 cut(s)	249, 902, 948
FspBI	CTAG	2 cut(s)	368, 444
GlaI	GCGC	4 cut(s)	152, 200, 202, 740
GluI	GCNGC	3 cut(s)	249, 902, 948
HaeIII	GGCC	2 cut(s)	5, 947
HapII	CCGG	2 cut(s)	302, 794
HgaI	GACGC	1 cut(s)	625
HhaI	GCGC	4 cut(s)	153, 201, 203, 741
Hin1II	CATG	6 cut(s)	80, 151, 329, 347, 739, 915
Hin6I	GCGC	4 cut(s)	151, 199, 201, 739
HinP1I	GCGC	4 cut(s)	151, 199, 201, 739
HincII	GTYRAC	3 cut(s)	220, 450, 615
HindII	GTYRAC	3 cut(s)	220, 450, 615
HinfI	GANTC	5 cut(s)	273, 475, 483, 634, 653
HpaII	CCGG	2 cut(s)	302, 794
Hpy166II	GTNNAC	7 cut(s)	136, 220, 331, 450, 615, 771, 929
Hpy188I	TCNGA	4 cut(s)	40, 49, 245, 681
Hpy188III	TCNNGA	2 cut(s)	19, 266
Hpy8I	GTNNAC	7 cut(s)	136, 220, 331, 450, 615, 771, 929
Hpy99I	CGWCG	3 cut(s)	454, 619, 806
HpyAV	CCTTC	2 cut(s)	407, 713
HpyCH4III	ACNGT	3 cut(s)	67, 133, 768
HpyCH4IV	ACGT	3 cut(s)	195, 407, 605
HpyCH4V	TGCA	1 cut(s)	844
HpyF10VI	GCNNNNNNNGC	1 cut(s)	11
HpyF3I	CTNAG	4 cut(s)	46, 548, 698, 897
HpySE526I	ACGT	3 cut(s)	195, 407, 605
Hsp92II	CATG	6 cut(s)	80, 151, 329, 347, 739, 915
HspAI	GCGC	4 cut(s)	151, 199, 201, 739
Kzo9I	GATC	4 cut(s)	338, 371, 453, 877
LmnI	GCTCC	2 cut(s)	245, 781
Lsp1109I	GCAGC	2 cut(s)	260, 888
MaeI	CTAG	2 cut(s)	368, 444
MaeII	ACGT	3 cut(s)	195, 407, 605
MaeIII	GTNAC	1 cut(s)	730
MalI	GATC	4 cut(s)	340, 373, 455, 879
MbiI	CCGCTC	1 cut(s)	430
MboI	GATC	4 cut(s)	338, 371, 453, 877
MboII	GAAGA	3 cut(s)	184, 268, 271
MluCI	AATT	2 cut(s)	23, 646
MlyI	GAGTC	3 cut(s)	267, 477, 662
MroXI	GAANNNNTTC	1 cut(s)	672
MseI	TTAA	2 cut(s)	392, 602
MslI	CAYNNNNRTG	1 cut(s)	194
MspA1I	CMGCKG	1 cut(s)	251
MspI	CCGG	2 cut(s)	302, 794
MspR9I	CCNGG	2 cut(s)	794, 943
MvaI	CCWGG	1 cut(s)	943
MvnI	CGCG	3 cut(s)	153, 201, 203
MwoI	GCNNNNNNNGC	1 cut(s)	11
NciI	CCSGG	1 cut(s)	794
NdeII	GATC	4 cut(s)	338, 371, 453, 877
NlaIII	CATG	6 cut(s)	80, 151, 329, 347, 739, 915
NmuCI	GTSAC	1 cut(s)	730
PaqCI	CACCTGC	1 cut(s)	835
PauI	GCGCGC	1 cut(s)	199
PcsI	WCGNNNNNNNCGW	2 cut(s)	492, 611
PdmI	GAANNNNTTC	1 cut(s)	672
PfeI	GAWTC	2 cut(s)	475, 634
Pfl23II	CGTACG	1 cut(s)	204
PflMI	CCANNNNNTGG	1 cut(s)	466
PkrI	GCNGC	3 cut(s)	250, 903, 949
Ple19I	CGATCG	1 cut(s)	341
PleI	GAGTC	3 cut(s)	267, 477, 661
PmaCI	CACGTG	1 cut(s)	408
PmlI	CACGTG	1 cut(s)	408
PpsI	GAGTC	3 cut(s)	267, 477, 661
Ppu21I	YACGTR	2 cut(s)	196, 408
PshAI	GACNNNNGTC	1 cut(s)	215
PsiI	TTATAA	1 cut(s)	510
Psp6I	CCWGG	1 cut(s)	941
PspCI	CACGTG	1 cut(s)	408
PspGI	CCWGG	1 cut(s)	941
PspLI	CGTACG	1 cut(s)	204
PspPI	GGNCC	2 cut(s)	40, 945
PteI	GCGCGC	1 cut(s)	199
PvuI	CGATCG	1 cut(s)	341
PvuII	CAGCTG	1 cut(s)	251
RsaI	GTAC	3 cut(s)	130, 206, 791
RsaNI	GTAC	3 cut(s)	129, 205, 790
RseI	CAYNNNNRTG	1 cut(s)	194
SalI	GTCGAC	3 cut(s)	218, 448, 613
SaqAI	TTAA	2 cut(s)	392, 602
SatI	GCNGC	3 cut(s)	249, 902, 948
Sau3AI	GATC	4 cut(s)	338, 371, 453, 877
Sau96I	GGNCC	2 cut(s)	40, 945
SchI	GAGTC	3 cut(s)	267, 477, 662
ScrFI	CCNGG	2 cut(s)	794, 943
SfcI	CTRYAG	1 cut(s)	58
SinI	GGWCC	1 cut(s)	40
SmiMI	CAYNNNNRTG	1 cut(s)	194
Sse9I	AATT	2 cut(s)	23, 646
SsiI	CCGC	6 cut(s)	299, 320, 430, 518, 875, 948
SspMI	CTAG	2 cut(s)	368, 444
StyD4I	CCNGG	2 cut(s)	792, 941
StyI	CCWWGG	2 cut(s)	367, 932
TaaI	ACNGT	3 cut(s)	67, 133, 768
TaiI	ACGT	3 cut(s)	198, 410, 608
TaqI	TCGA	6 cut(s)	219, 449, 473, 568, 614, 804
TasI	AATT	2 cut(s)	23, 646
TatI	WGTACW	1 cut(s)	128
TauI	GCSGC	1 cut(s)	950
TfiI	GAWTC	2 cut(s)	475, 634
Tru1I	TTAA	2 cut(s)	392, 602
Tru9I	TTAA	2 cut(s)	392, 602
TscAI	CASTG	1 cut(s)	694
TseFI	GTSAC	1 cut(s)	730
TseI	GCWGC	2 cut(s)	248, 901
Tsp45I	GTSAC	1 cut(s)	730
TspDTI	ATGAA	3 cut(s)	106, 649, 900
TspGWI	ACGGA	1 cut(s)	114
TspRI	CASTG	1 cut(s)	694
Van91I	CCANNNNNTGG	1 cut(s)	466
VpaK11BI	GGWCC	1 cut(s)	40
XapI	RAATTY	2 cut(s)	23, 646
XmaJI	CCTAGG	1 cut(s)	367
XmiI	GTMKAC	6 cut(s)	135, 219, 330, 449, 614, 770
XmnI	GAANNNNTTC	1 cut(s)	672
XspI	CTAG	2 cut(s)	368, 444

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.