FvH4_4g19910

Belongs to the ubiquitin-conjugating enzyme family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Forward (+)
23396368 .. 23398095
1728 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g19910.t1

Sequence Viewer

Length: 1077 bp
ATGACCCAAAACGGCGACGCCCCTACTCCCTTCCCCCGATTCGACGTCGTTCCGGACCACTCGGACCACGCCTACGCCGCCGTCTCCAGCAAGAAACAAAACTACGACGGATCAGTCCACAAGACCATCATGAAAGAGTGGCGGGTCCTCGAGAACAACCTCCCGGACTCCATCTTCGTGCGCGTGTACGACACGCGCATCGAGCTTCTCCGCGCCGTCATCGTCGGCGCCGCCGGGACTCCCTACCACGACGCGCTCTTCTTCTTCGACATTAAGTTCCCGCCCGATTACCCGACCCGGCCCCCCATTGTGCACTACCGGTCATACGGGTTGCGGGTCAACCCGAATCTCTACGCGAGCGGGTACGTCTGCCTCAGCCTGCTCAACACCTGGATCGGGAAGAAGCGGGAGAAGTGGGACCCGGCCCAGTCCACGGTTCTCCAGGTTCTGCTCTCGATCCAGGCGCTGGTTCTGAACGAGAAGCCGTATTTCAACGAACCGGGTACCGGGTCGCCGGGCGGGTCGGGTGTAGAGAAGCGGTCGCGGGCGTACAATGAGGACGCGTTTGTCTTGACGTGCAAGACGACGCTGTATTCGCTCCGGAATCCGCCCAGGAATTTCGAGGCGTTTACGGCGGTGTTTTTCCGGGAGAGGGGGAGTCGGATTCTGAGAGCGTGCGGCGCGTACGTGAACGCGCGAGTGGGAGTTGGGTGCTACAGAGATGAAGGCGAGCTTGAAACTTCTACGCAGAAGCCGAGGGTAGTTTGGGACGTTTCGAAGAAATTTAAGGCGTCAATGCAGGAGCTGTATCCGCAACTTGTACAAGTTTTCAAGAAGAATGGGGCTCTTGATTTGGTTGAGGTGTTGGAGGTGGAGGCTAAAACGACGCCGGTTAAGGTGGAGGCTAAAACAAAGACGGTGAAGGTTCGAGTTGACAAGAAAGCTAAGATTGGCATTGCTAAGAAGGTTATTGGGAAATTGAGGAAGTTTTTGGGACTGAGCAAGAAGAAGAATCAGAAGATGGAAAAGAGTGATGAGAAGAAGGATGTCAATGCTGGAGTGGCTGTGGGATGTTGA

Protein Analysis

359

Amino Acids

40.26

Weight (kDa)

9.62

Isoelectric Point (pI)

28.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UQ_con PF00179 43 - 162 5.6e-22 Ubiquitin-conjugating enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 113, 566
AatII GACGTC 1 cut(s) 48
Acc65I GGTACC 1 cut(s) 503
AccB1I GGYRCC 2 cut(s) 227, 503
AccB7I CCANNNNNTGG 1 cut(s) 466
AccBSI CCGCTC 1 cut(s) 360
AccIII TCCGGA 2 cut(s) 52, 600
AclWI GGATC 3 cut(s) 118, 401, 451
AcsI RAATTY 2 cut(s) 616, 782
AcyI GRCGYC 5 cut(s) 18, 45, 228, 791, 887
AfaI GTAC 6 cut(s) 188, 365, 505, 551, 686, 822
AfiI CCNNNNNNNGG 5 cut(s) 396, 433, 466, 506, 652
AflIII ACRYGT 1 cut(s) 561
AgeI ACCGGT 1 cut(s) 318
AgsI TTSAA 3 cut(s) 493, 737, 832
AjiI CACGTC 1 cut(s) 576
AjnI CCWGG 4 cut(s) 389, 441, 459, 611
AluBI AGCT 4 cut(s) 205, 733, 805, 944
AluI AGCT 4 cut(s) 205, 733, 805, 944
Alw21I GWGCWC 1 cut(s) 315
Alw26I GTCTC 1 cut(s) 88
Alw44I GTGCAC 1 cut(s) 311
AlwI GGATC 3 cut(s) 118, 401, 451
AlwNI CAGNNNCTG 3 cut(s) 448, 466, 805
Ama87I CYCGRG 1 cut(s) 149
Aor13HI TCCGGA 2 cut(s) 52, 600
AoxI GGCC 2 cut(s) 299, 423
ApaLI GTGCAC 1 cut(s) 311
ApoI RAATTY 2 cut(s) 616, 782
ArsI GACNNNNNNTTYG 4 cut(s) 158, 190, 577, 609
AsiGI ACCGGT 1 cut(s) 318
Asp718I GGTACC 1 cut(s) 503
AspLEI GCGC 8 cut(s) 183, 198, 215, 230, 256, 466, 683, 697
AspS9I GGNCC 6 cut(s) 55, 64, 145, 300, 418, 424
AsuC2I CCSGG 8 cut(s) 164, 235, 298, 422, 501, 508, 516, 647
AsuHPI GGTGA 1 cut(s) 931
AsuII TTCGAA 1 cut(s) 776
AvaI CYCGRG 1 cut(s) 149
AvaII GGWCC 4 cut(s) 55, 64, 145, 418
BaeGI GKGCMC 1 cut(s) 315
BanI GGYRCC 2 cut(s) 227, 503
BanII GRGCYC 1 cut(s) 847
Bbv12I GWGCWC 1 cut(s) 315
BbvCI CCTCAGC 1 cut(s) 374
BccI CCATC 3 cut(s) 134, 179, 1015
BceAI ACGGC 5 cut(s) 28, 65, 200, 469, 648
BciT130I CCWGG 4 cut(s) 391, 443, 461, 613
BciVI GTATCC 1 cut(s) 819
BcnI CCSGG 8 cut(s) 164, 235, 298, 422, 501, 508, 516, 647
BcoDI GTCTC 1 cut(s) 88
BfmI CTRYAG 1 cut(s) 715
BfoI RGCGCY 2 cut(s) 231, 467
BfuI GTATCC 1 cut(s) 819
BisI GCNGC 3 cut(s) 78, 231, 679
BlsI GCNGC 3 cut(s) 79, 232, 680
Bme18I GGWCC 4 cut(s) 55, 64, 145, 418
BmeT110I CYCGRG 1 cut(s) 149
BmgBI CACGTC 1 cut(s) 576
BmgT120I GGNCC 6 cut(s) 55, 64, 145, 300, 418, 424
BmiI GGNNCC 6 cut(s) 146, 229, 302, 419, 420, 505
BmrI ACTGGG 1 cut(s) 421
BmsI GCATC 1 cut(s) 207
BmuI ACTGGG 1 cut(s) 421
BpmI CTGGAG 3 cut(s) 70, 425, 1077
Bpu10I CCTNAGC 1 cut(s) 374
Bpu14I TTCGAA 1 cut(s) 776
BpuMI CCSGG 8 cut(s) 164, 235, 298, 422, 501, 508, 516, 647
BsaAI YACGTR 1 cut(s) 688
BsaHI GRCGYC 5 cut(s) 18, 45, 228, 791, 887
BsaJI CCNNGG 3 cut(s) 432, 611, 755
BsaWI WCCGGW 3 cut(s) 52, 318, 600
BsaXI ACNNNNNCTCC 1 cut(s) 1050
Bsc4I CCNNNNNNNGG 5 cut(s) 396, 433, 466, 506, 652
Bse118I RCCGGY 2 cut(s) 318, 889
Bse1I ACTGG 1 cut(s) 427
Bse3DI GCAATG 1 cut(s) 954
BseAI TCCGGA 2 cut(s) 52, 600
BseBI CCWGG 4 cut(s) 391, 443, 461, 613
BseDI CCNNGG 3 cut(s) 432, 611, 755
BseGI GGATG 2 cut(s) 1051, 1076
BseLI CCNNNNNNNGG 5 cut(s) 396, 433, 466, 506, 652
BseMI GCAATG 1 cut(s) 954
BseMII CTCAG 3 cut(s) 388, 659, 989
BseNI ACTGG 1 cut(s) 427
BseSI GKGCMC 1 cut(s) 315
Bsh1285I CGRYCG 1 cut(s) 542
BshFI GGCC 2 cut(s) 301, 425
BshNI GGYRCC 2 cut(s) 227, 503
BshTI ACCGGT 1 cut(s) 318
BsiEI CGRYCG 1 cut(s) 542
BsiHKAI GWGCWC 1 cut(s) 315
BsiHKCI CYCGRG 1 cut(s) 149
BsiWI CGTACG 1 cut(s) 684
BslFI GGGAC 4 cut(s) 250, 431, 782, 1008
BslI CCNNNNNNNGG 5 cut(s) 396, 433, 466, 506, 652
BsmAI GTCTC 1 cut(s) 88
BsmBI CGTCTC 1 cut(s) 88
BsmFI GGGAC 4 cut(s) 250, 431, 782, 1008
BsnI GGCC 2 cut(s) 301, 425
BsoBI CYCGRG 1 cut(s) 149
Bsp119I TTCGAA 1 cut(s) 776
Bsp1286I GDGCHC 2 cut(s) 315, 847
Bsp13I TCCGGA 2 cut(s) 52, 600
Bsp1407I TGTACA 1 cut(s) 820
Bsp143I GATC 3 cut(s) 110, 393, 456
BspANI GGCC 2 cut(s) 301, 425
BspCNI CTCAG 3 cut(s) 387, 660, 990
BspEI TCCGGA 2 cut(s) 52, 600
BspHI TCATGA 1 cut(s) 129
BspLI GGNNCC 6 cut(s) 146, 229, 302, 419, 420, 505
BspPI GGATC 3 cut(s) 118, 401, 451
BspQI GCTCTTC 1 cut(s) 263
BspT104I TTCGAA 1 cut(s) 776
BspT107I GGYRCC 2 cut(s) 227, 503
BsrBI CCGCTC 1 cut(s) 360
BsrDI GCAATG 1 cut(s) 954
BsrFI RCCGGY 2 cut(s) 318, 889
BsrGI TGTACA 1 cut(s) 820
BsrI ACTGG 1 cut(s) 427
BssAI RCCGGY 2 cut(s) 318, 889
BssECI CCNNGG 3 cut(s) 432, 611, 755
BssMI GATC 3 cut(s) 110, 393, 456
BssNI GRCGYC 5 cut(s) 18, 45, 228, 791, 887
Bst2UI CCWGG 4 cut(s) 391, 443, 461, 613
Bst4CI ACNGT 2 cut(s) 436, 919
Bst6I CTCTTC 1 cut(s) 263
BstACI GRCGYC 5 cut(s) 18, 45, 228, 791, 887
BstAUI TGTACA 1 cut(s) 820
BstBAI YACGTR 1 cut(s) 688
BstBI TTCGAA 1 cut(s) 776
BstC8I GCNNGC 5 cut(s) 358, 380, 546, 676, 731
BstDEI CTNAG 5 cut(s) 374, 668, 945, 960, 998
BstDSI CCRYGG 1 cut(s) 432
BstF5I GGATG 2 cut(s) 1051, 1076
BstH2I RGCGCY 2 cut(s) 231, 467
BstHHI GCGC 8 cut(s) 183, 198, 215, 230, 256, 466, 683, 697
BstKTI GATC 3 cut(s) 113, 396, 459
BstMAI GTCTC 1 cut(s) 88
BstMBI GATC 3 cut(s) 110, 393, 456
BstMCI CGRYCG 1 cut(s) 542
BstMWI GCNNNNNNNGC 7 cut(s) 77, 202, 595, 632, 680, 811, 1061
BstNI CCWGG 4 cut(s) 391, 443, 461, 613
BstSFI CTRYAG 1 cut(s) 715
BstSLI GKGCMC 1 cut(s) 315
BsuI GTATCC 1 cut(s) 819
BsuRI GGCC 2 cut(s) 301, 425
BtgI CCRYGG 1 cut(s) 432
BtrI CACGTC 1 cut(s) 576
BtsCI GGATG 2 cut(s) 1051, 1076
Cac8I GCNNGC 5 cut(s) 358, 380, 546, 676, 731
CaiI CAGNNNCTG 3 cut(s) 448, 466, 805
CciI TCATGA 1 cut(s) 129
CfoI GCGC 8 cut(s) 183, 198, 215, 230, 256, 466, 683, 697
Cfr10I RCCGGY 2 cut(s) 318, 889
Cfr13I GGNCC 6 cut(s) 55, 64, 145, 300, 418, 424
CseI GACGC 6 cut(s) 26, 260, 569, 595, 780, 895
Csp6I GTAC 6 cut(s) 187, 364, 504, 550, 685, 821
CspAI ACCGGT 1 cut(s) 318
CviAII CATG 1 cut(s) 130
CviQI GTAC 6 cut(s) 187, 364, 504, 550, 685, 821
DdeI CTNAG 5 cut(s) 374, 668, 945, 960, 998
DinI GGCGCC 1 cut(s) 229
DpnI GATC 3 cut(s) 112, 395, 458
DpnII GATC 3 cut(s) 110, 393, 456
DrdI GACNNNNNNGTC 2 cut(s) 113, 566
DseDI GACNNNNNNGTC 2 cut(s) 113, 566
Eam1104I CTCTTC 1 cut(s) 263
EarI CTCTTC 1 cut(s) 263
EciI GGCGGA 1 cut(s) 597
Eco24I GRGCYC 1 cut(s) 847
Eco47I GGWCC 4 cut(s) 55, 64, 145, 418
Eco88I CYCGRG 1 cut(s) 149
EcoO109I RGGNCCY 2 cut(s) 145, 418
EcoRII CCWGG 4 cut(s) 389, 441, 459, 611
EcoT38I GRGCYC 1 cut(s) 847
EgeI GGCGCC 1 cut(s) 229
EheI GGCGCC 1 cut(s) 229
Esp3I CGTCTC 1 cut(s) 88
FaeI CATG 1 cut(s) 133
FaiI YATR 2 cut(s) 131, 325
FalI AAGNNNNNCTT 2 cut(s) 717, 749
FaqI GGGAC 4 cut(s) 250, 431, 782, 1008
FatI CATG 1 cut(s) 129
FauI CCCGC 7 cut(s) 135, 288, 327, 353, 399, 512, 537
Fnu4HI GCNGC 3 cut(s) 78, 231, 679
FokI GGATG 1 cut(s) 1058
FriOI GRGCYC 1 cut(s) 847
Fsp4HI GCNGC 3 cut(s) 78, 231, 679
GlaI GCGC 8 cut(s) 182, 197, 214, 229, 255, 465, 682, 696
GluI GCNGC 3 cut(s) 78, 231, 679
GsuI CTGGAG 3 cut(s) 70, 425, 1077
HaeII RGCGCY 2 cut(s) 231, 467
HaeIII GGCC 2 cut(s) 301, 425
HgaI GACGC 6 cut(s) 26, 260, 569, 595, 780, 895
HhaI GCGC 8 cut(s) 183, 198, 215, 230, 256, 466, 683, 697
Hin1I GRCGYC 5 cut(s) 18, 45, 228, 791, 887
Hin1II CATG 1 cut(s) 133
Hin6I GCGC 8 cut(s) 181, 196, 213, 228, 254, 464, 681, 695
HinP1I GCGC 8 cut(s) 181, 196, 213, 228, 254, 464, 681, 695
HincII GTYRAC 2 cut(s) 340, 934
HindII GTYRAC 2 cut(s) 340, 934
HinfI GANTC 8 cut(s) 39, 167, 238, 346, 604, 658, 664, 1012
HphI GGTGA 1 cut(s) 931
Hpy166II GTNNAC 8 cut(s) 118, 187, 313, 340, 432, 630, 691, 934
Hpy188I TCNGA 5 cut(s) 64, 474, 663, 669, 1017
Hpy188III TCNNGA 9 cut(s) 53, 130, 151, 397, 454, 571, 601, 832, 848
Hpy8I GTNNAC 8 cut(s) 118, 187, 313, 340, 432, 630, 691, 934
Hpy99I CGWCG 8 cut(s) 20, 47, 50, 110, 227, 254, 589, 889
HpyAV CCTTC 5 cut(s) 40, 719, 916, 958, 1036
HpyCH4III ACNGT 2 cut(s) 436, 919
HpyCH4IV ACGT 5 cut(s) 45, 366, 575, 687, 771
HpyCH4V TGCA 3 cut(s) 313, 579, 799
HpyF10VI GCNNNNNNNGC 7 cut(s) 77, 202, 595, 632, 680, 811, 1061
HpyF3I CTNAG 5 cut(s) 374, 668, 945, 960, 998
HpySE526I ACGT 5 cut(s) 45, 366, 575, 687, 771
Hsp92I GRCGYC 5 cut(s) 18, 45, 228, 791, 887
Hsp92II CATG 1 cut(s) 133
HspAI GCGC 8 cut(s) 181, 196, 213, 228, 254, 464, 681, 695
KasI GGCGCC 1 cut(s) 227
KflI GGGWCCC 1 cut(s) 418
Kpn2I TCCGGA 2 cut(s) 52, 600
KpnI GGTACC 1 cut(s) 507
Kzo9I GATC 3 cut(s) 110, 393, 456
LguI GCTCTTC 1 cut(s) 263
LmnI GCTCC 2 cut(s) 603, 802
LweI GCATC 1 cut(s) 207
MaeII ACGT 5 cut(s) 45, 366, 575, 687, 771
MalI GATC 3 cut(s) 112, 395, 458
MbiI CCGCTC 1 cut(s) 360
MboI GATC 3 cut(s) 110, 393, 456
MhlI GDGCHC 2 cut(s) 315, 847
MluCI AATT 3 cut(s) 616, 782, 977
MluI ACGCGT 1 cut(s) 561
Mly113I GGCGCC 1 cut(s) 228
MlyI GAGTC 3 cut(s) 161, 232, 667
MmeI TCCRAC 2 cut(s) 641, 846
MroI TCCGGA 2 cut(s) 52, 600
MseI TTAA 3 cut(s) 273, 786, 894
MslI CAYNNNNRTG 1 cut(s) 176
MvaI CCWGG 4 cut(s) 391, 443, 461, 613
MwoI GCNNNNNNNGC 7 cut(s) 77, 202, 595, 632, 680, 811, 1061
NarI GGCGCC 1 cut(s) 228
NciI CCSGG 8 cut(s) 164, 235, 298, 422, 501, 508, 516, 647
NdeII GATC 3 cut(s) 110, 393, 456
NlaIII CATG 1 cut(s) 133
NlaIV GGNNCC 6 cut(s) 146, 229, 302, 419, 420, 505
NmeAIII GCCGAG 1 cut(s) 780
NspV TTCGAA 1 cut(s) 776
PaeR7I CTCGAG 1 cut(s) 149
PagI TCATGA 1 cut(s) 129
PciSI GCTCTTC 1 cut(s) 263
PcsI WCGNNNNNNNCGW 2 cut(s) 581, 752
PfeI GAWTC 5 cut(s) 39, 346, 604, 664, 1012
Pfl23II CGTACG 1 cut(s) 684
PflMI CCANNNNNTGG 1 cut(s) 466
PfoI TCCNGGA 2 cut(s) 162, 645
PinAI ACCGGT 1 cut(s) 318
PkrI GCNGC 3 cut(s) 79, 232, 680
PleI GAGTC 3 cut(s) 161, 232, 666
PluTI GGCGCC 1 cut(s) 231
PpsI GAGTC 3 cut(s) 161, 232, 666
Ppu21I YACGTR 1 cut(s) 688
PpuMI RGGWCCY 2 cut(s) 145, 418
Psp5II RGGWCCY 2 cut(s) 145, 418
Psp6I CCWGG 4 cut(s) 389, 441, 459, 611
PspGI CCWGG 4 cut(s) 389, 441, 459, 611
PspLI CGTACG 1 cut(s) 684
PspN4I GGNNCC 6 cut(s) 146, 229, 302, 419, 420, 505
PspPI GGNCC 6 cut(s) 55, 64, 145, 300, 418, 424
PspPPI RGGWCCY 2 cut(s) 145, 418
PstNI CAGNNNCTG 3 cut(s) 448, 466, 805
RsaI GTAC 6 cut(s) 188, 365, 505, 551, 686, 822
RsaNI GTAC 6 cut(s) 187, 364, 504, 550, 685, 821
RseI CAYNNNNRTG 1 cut(s) 176
SapI GCTCTTC 1 cut(s) 263
SaqAI TTAA 3 cut(s) 273, 786, 894
SatI GCNGC 3 cut(s) 78, 231, 679
Sau3AI GATC 3 cut(s) 110, 393, 456
Sau96I GGNCC 6 cut(s) 55, 64, 145, 300, 418, 424
SchI GAGTC 3 cut(s) 161, 232, 667
SduI GDGCHC 2 cut(s) 315, 847
SfaNI GCATC 1 cut(s) 207
SfcI CTRYAG 1 cut(s) 715
SfoI GGCGCC 1 cut(s) 229
Sfr274I CTCGAG 1 cut(s) 149
SfuI TTCGAA 1 cut(s) 776
SinI GGWCC 4 cut(s) 55, 64, 145, 418
SlaI CTCGAG 1 cut(s) 149
SmiMI CAYNNNNRTG 1 cut(s) 176
SmlI CTYRAG 1 cut(s) 149
SmoI CTYRAG 1 cut(s) 149
Sse9I AATT 3 cut(s) 616, 782, 977
SspDI GGCGCC 1 cut(s) 227
TaaI ACNGT 2 cut(s) 436, 919
TaiI ACGT 5 cut(s) 48, 369, 578, 690, 774
TaqI TCGA 8 cut(s) 42, 150, 201, 267, 455, 621, 776, 928
TasI AATT 3 cut(s) 616, 782, 977
TatI WGTACW 1 cut(s) 820
TauI GCSGC 3 cut(s) 80, 233, 681
TfiI GAWTC 5 cut(s) 39, 346, 604, 664, 1012
Tru1I TTAA 3 cut(s) 273, 786, 894
Tru9I TTAA 3 cut(s) 273, 786, 894
TspDTI ATGAA 2 cut(s) 146, 738
TspGWI ACGGA 1 cut(s) 123
Van91I CCANNNNNTGG 1 cut(s) 466
VneI GTGCAC 1 cut(s) 311
VpaK11BI GGWCC 4 cut(s) 55, 64, 145, 418
XapI RAATTY 2 cut(s) 616, 782
XhoI CTCGAG 1 cut(s) 149
ZraI GACGTC 1 cut(s) 46
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.