Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0000808

Physical Location & Seq

Genomic Coordinates Reverse (-)

2130352 .. 2131581

Gene Structure 1230 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000022500

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGAACAACAACAACGAAGATGTTAATTATTTGATCAATAGCGGCAGTACAGTCTACAAGAAGATTACGCGCGAGTGGAAAATTTTGGAGAATGGCCTTCCGGACACCATCTACGTGCGCGGTTATGAGACGCGCGTCGACCTCATGAGGGCTGTGAATTTCCCGCCTGATTATCCGAACTACCCGCCACAAGTCCATTACCAGTCGCACGGGTTGAGAATAAACCCGAACATAGGCCCGGAAGGACACATATGCTTGAGCCTTCTCAACACATGGATTGGCTGGGGAAAGGAGCGGTGGATCCCATCTCAGTCGACGATCCTACAAGTTCTGGTTTCCATCCAGGCGCTCGTTCTCAATGAGAAGCCATGCTTTAATGAAATGGGCGTAGGTTTCTTGGATTGGATTTCGGGTGTGGATTTGATGCACAACCCTTACAATGAAAAGGTGTTTATAACAACGTGCCAGTCAATGCTCTATTTGCTTCGAAATCCACCAAAGAATTTCGAGGCTTTCATTGTCGAGTATTTTCGTCAGAGAGCGAGTCATATACTGAGAGCGTGCTTCGCTTATGCAAACGGAGGAGGAGTTAATTGTGAGAGGAAACCAGCAATGTCGTTTTCATGGCGTAAACTTTATTTAGTTTGTTGTATACCATGGGTGAATGATGATGATCGTGATTGTGATCGTGATCGTGATGTGTCTTTATTGAAAAACAAAGGCGAAGTAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0031625 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044424 GO:0044444 GO:0044464 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

245

Amino Acids

28.26

Weight (kDa)

6.94

Isoelectric Point (pI)

37.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	21 - 120	4.1e-14	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000808)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g01260 FvH4_4g19890 FvH4_4g19900 FvH4_4g19910 FvH4_4g23111
malus_domestica	MD16G1152700.v1.1
prunus_persica	Prupe.1G115900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0415111 RchiOBHm_Chr4g0421801 RchiOBHm_Chr4g0425521 RchiOBHm_Chr4g0425551
rosa_laevigata	RLG00000007355 RLG00000007357 RLG00000007358 RLG00000007360 RLG00000007361 RLG00000007364 RLG00000007366 RLG00000007640 RLG00000008097 RLG00000022500
rosa_multiflora	Rmu_co8278857.1_g000001 Rmu_sc0000635.1_g000001 Rmu_sc0000709.1_g000009 Rmu_sc0001900.1_g000008 Rmu_sc0001900.1_g000009 Rmu_sc0003748.1_g000014 Rmu_sc0008440.1_g000003 Rmu_sc0010306.1_g000005 Rmu_sc0012856.1_g000010 Rmu_sc0032188.1_g000001
rosa_roxburghii	Rroxscaffold_5G00364100 Rroxscaffold_5G00367460 Rroxscaffold_5G00367480 Rroxscaffold_5G00367490 Rroxscaffold_5G00367510 Rroxscaffold_5G00371110
rosa_rugosa	Rorug04G0176300 Rorug04G0203700 Rorug04G0203800 Rorug04G0203800 Rorug04G0203900 Rorug06G0289400
rosa_samantha	Rh4AG192100 Rh4AG235200 Rh4AG236000 Rh4AG260700 Rh4AG260900 Rh4BG190000 Rh4BG238700 Rh4BG266400 Rh4BG266600 Rh4BG266700 Rh4CG202900 Rh4CG250700 Rh4CG277700 Rh4CG277900 Rh4CG278000 Rh4DG235300 Rh4DG262700 Rh4DG262900 Rh4DG263100 Rh6BG409300 Rh6DG401700
rosa_wichuraiana	Rw4G016340 Rw4G019840 Rw4G022570 Rw4G022580 Rw4G022590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	455
AccBSI	CCGCTC	1 cut(s)	295
AccI	GTMKAC	4 cut(s)	54, 138, 314, 652
AccII	CGCG	5 cut(s)	70, 72, 120, 133, 135
AccIII	TCCGGA	1 cut(s)	100
AciI	CCGC	5 cut(s)	42, 120, 164, 185, 295
AclWI	GGATC	3 cut(s)	295, 308, 313
AcsI	RAATTY	3 cut(s)	81, 157, 502
AfaI	GTAC	1 cut(s)	49
AfiI	CCNNNNNNNGG	2 cut(s)	148, 233
AgsI	TTSAA	1 cut(s)	712
AjnI	CCWGG	1 cut(s)	342
Alw26I	GTCTC	1 cut(s)	122
AlwI	GGATC	3 cut(s)	295, 308, 313
Aor13HI	TCCGGA	1 cut(s)	100
AoxI	GGCC	2 cut(s)	94, 235
ApoI	RAATTY	3 cut(s)	81, 157, 502
AspLEI	GCGC	4 cut(s)	72, 120, 135, 349
AspS9I	GGNCC	1 cut(s)	236
AsuC2I	CCSGG	1 cut(s)	239
AsuHPI	GGTGA	1 cut(s)	673
AsuII	TTCGAA	1 cut(s)	487
BamHI	GGATCC	1 cut(s)	300
BccI	CCATC	3 cut(s)	116, 313, 347
BciT130I	CCWGG	1 cut(s)	344
BclI	TGATCA	1 cut(s)	33
BcnI	CCSGG	1 cut(s)	239
BcoDI	GTCTC	1 cut(s)	122
BfoI	RGCGCY	1 cut(s)	350
BisI	GCNGC	1 cut(s)	43
BlsI	GCNGC	1 cut(s)	44
Bme1390I	CCNGG	2 cut(s)	239, 344
BmgT120I	GGNCC	1 cut(s)	236
BmiI	GGNNCC	1 cut(s)	302
BmrFI	CCNGG	2 cut(s)	239, 344
BmsI	GCATC	1 cut(s)	414
BoxI	GACNNNNGTC	1 cut(s)	134
Bpu14I	TTCGAA	1 cut(s)	487
BpuEI	CTTGAG	1 cut(s)	277
BpuMI	CCSGG	1 cut(s)	239
BsaAI	YACGTR	1 cut(s)	115
BsaBI	GATNNNNATC	3 cut(s)	672, 684, 690
BsaJI	CCNNGG	1 cut(s)	656
BsaWI	WCCGGW	1 cut(s)	100
BsaXI	ACNNNNNCTCC	2 cut(s)	573, 603
Bsc4I	CCNNNNNNNGG	2 cut(s)	148, 233
Bse1I	ACTGG	2 cut(s)	202, 466
Bse3DI	GCAATG	1 cut(s)	618
Bse8I	GATNNNNATC	3 cut(s)	672, 684, 690
BseAI	TCCGGA	1 cut(s)	100
BseBI	CCWGG	1 cut(s)	344
BseDI	CCNNGG	1 cut(s)	656
BseGI	GGATG	1 cut(s)	339
BseJI	GATNNNNATC	3 cut(s)	672, 684, 690
BseLI	CCNNNNNNNGG	2 cut(s)	148, 233
BseMI	GCAATG	1 cut(s)	618
BseMII	CTCAG	2 cut(s)	323, 545
BseNI	ACTGG	2 cut(s)	202, 466
BseRI	GAGGAG	2 cut(s)	597, 600
BseYI	CCCAGC	1 cut(s)	282
Bsh1236I	CGCG	5 cut(s)	70, 72, 120, 133, 135
BshFI	GGCC	2 cut(s)	96, 237
BsiSI	CCGG	2 cut(s)	101, 239
BslI	CCNNNNNNNGG	2 cut(s)	148, 233
BsmAI	GTCTC	1 cut(s)	122
BsmBI	CGTCTC	1 cut(s)	122
BsnI	GGCC	2 cut(s)	96, 237
Bsp119I	TTCGAA	1 cut(s)	487
Bsp13I	TCCGGA	1 cut(s)	100
Bsp143I	GATC	6 cut(s)	33, 300, 318, 673, 685, 691
Bsp19I	CCATGG	1 cut(s)	656
BspACI	CCGC	5 cut(s)	42, 120, 164, 185, 295
BspANI	GGCC	2 cut(s)	96, 237
BspCNI	CTCAG	2 cut(s)	322, 546
BspEI	TCCGGA	1 cut(s)	100
BspFNI	CGCG	5 cut(s)	70, 72, 120, 133, 135
BspHI	TCATGA	1 cut(s)	144
BspLI	GGNNCC	1 cut(s)	302
BspPI	GGATC	3 cut(s)	295, 308, 313
BspT104I	TTCGAA	1 cut(s)	487
BsrBI	CCGCTC	1 cut(s)	295
BsrDI	GCAATG	1 cut(s)	618
BsrI	ACTGG	2 cut(s)	202, 466
BssECI	CCNNGG	1 cut(s)	656
BssMI	GATC	6 cut(s)	33, 300, 318, 673, 685, 691
BssNAI	GTATAC	1 cut(s)	653
BssT1I	CCWWGG	1 cut(s)	656
Bst1107I	GTATAC	1 cut(s)	653
Bst2UI	CCWGG	1 cut(s)	344
Bst4CI	ACNGT	1 cut(s)	52
BstBAI	YACGTR	1 cut(s)	115
BstBI	TTCGAA	1 cut(s)	487
BstC8I	GCNNGC	1 cut(s)	562
BstDEI	CTNAG	2 cut(s)	309, 554
BstDSI	CCRYGG	1 cut(s)	656
BstF5I	GGATG	1 cut(s)	339
BstFNI	CGCG	5 cut(s)	70, 72, 120, 133, 135
BstH2I	RGCGCY	1 cut(s)	350
BstHHI	GCGC	4 cut(s)	72, 120, 135, 349
BstKTI	GATC	6 cut(s)	36, 303, 321, 676, 688, 694
BstMAI	GTCTC	1 cut(s)	122
BstMBI	GATC	6 cut(s)	33, 300, 318, 673, 685, 691
BstMWI	GCNNNNNNNGC	2 cut(s)	481, 566
BstNI	CCWGG	1 cut(s)	344
BstPAI	GACNNNNGTC	1 cut(s)	134
BstSCI	CCNGG	2 cut(s)	237, 342
BstUI	CGCG	5 cut(s)	70, 72, 120, 133, 135
BstX2I	RGATCY	1 cut(s)	300
BstYI	RGATCY	1 cut(s)	300
BstZ17I	GTATAC	1 cut(s)	653
BsuRI	GGCC	2 cut(s)	96, 237
BtgI	CCRYGG	1 cut(s)	656
BtsCI	GGATG	1 cut(s)	339
Cac8I	GCNNGC	1 cut(s)	562
CciI	TCATGA	1 cut(s)	144
CfoI	GCGC	4 cut(s)	72, 120, 135, 349
Cfr13I	GGNCC	1 cut(s)	236
CseI	GACGC	2 cut(s)	124, 139
Csp6I	GTAC	1 cut(s)	48
CviAII	CATG	5 cut(s)	145, 273, 369, 624, 657
CviJI	RGCY	7 cut(s)	96, 152, 237, 261, 282, 367, 512
CviKI_1	RGCY	7 cut(s)	96, 152, 237, 261, 282, 367, 512
CviQI	GTAC	1 cut(s)	48
DdeI	CTNAG	2 cut(s)	309, 554
DpnI	GATC	6 cut(s)	35, 302, 320, 675, 687, 693
DpnII	GATC	6 cut(s)	33, 300, 318, 673, 685, 691
Eco130I	CCWWGG	1 cut(s)	656
EcoRII	CCWGG	1 cut(s)	342
EcoT14I	CCWWGG	1 cut(s)	656
ErhI	CCWWGG	1 cut(s)	656
Esp3I	CGTCTC	1 cut(s)	122
FaeI	CATG	5 cut(s)	148, 276, 372, 627, 660
FalI	AAGNNNNNCTT	2 cut(s)	356, 388
FatI	CATG	5 cut(s)	144, 272, 368, 623, 656
FauI	CCCGC	2 cut(s)	171, 192
FauNDI	CATATG	1 cut(s)	251
FbaI	TGATCA	1 cut(s)	33
FblI	GTMKAC	4 cut(s)	54, 138, 314, 652
Fnu4HI	GCNGC	1 cut(s)	43
FokI	GGATG	1 cut(s)	326
Fsp4HI	GCNGC	1 cut(s)	43
GlaI	GCGC	4 cut(s)	71, 119, 134, 348
GluI	GCNGC	1 cut(s)	43
GsaI	CCCAGC	1 cut(s)	286
HaeII	RGCGCY	1 cut(s)	350
HaeIII	GGCC	2 cut(s)	96, 237
HapII	CCGG	2 cut(s)	101, 239
HgaI	GACGC	2 cut(s)	124, 139
HhaI	GCGC	4 cut(s)	72, 120, 135, 349
Hin1II	CATG	5 cut(s)	148, 276, 372, 627, 660
Hin6I	GCGC	4 cut(s)	70, 118, 133, 347
HinP1I	GCGC	4 cut(s)	70, 118, 133, 347
HincII	GTYRAC	2 cut(s)	139, 315
HindII	GTYRAC	2 cut(s)	139, 315
HinfI	GANTC	1 cut(s)	544
HpaII	CCGG	2 cut(s)	101, 239
HphI	GGTGA	1 cut(s)	673
Hpy166II	GTNNAC	5 cut(s)	55, 139, 315, 632, 653
Hpy188I	TCNGA	2 cut(s)	177, 537
Hpy188III	TCNNGA	5 cut(s)	101, 145, 677, 689, 695
Hpy8I	GTNNAC	5 cut(s)	55, 139, 315, 632, 653
Hpy99I	CGWCG	2 cut(s)	140, 319
HpyAV	CCTTC	3 cut(s)	107, 236, 272
HpyCH4III	ACNGT	1 cut(s)	52
HpyCH4IV	ACGT	2 cut(s)	114, 461
HpyCH4V	TGCA	2 cut(s)	427, 575
HpyF10VI	GCNNNNNNNGC	2 cut(s)	481, 566
HpyF3I	CTNAG	2 cut(s)	309, 554
HpySE526I	ACGT	2 cut(s)	114, 461
Hsp92II	CATG	5 cut(s)	148, 276, 372, 627, 660
HspAI	GCGC	4 cut(s)	70, 118, 133, 347
Kpn2I	TCCGGA	1 cut(s)	100
Ksp22I	TGATCA	1 cut(s)	33
Kzo9I	GATC	6 cut(s)	33, 300, 318, 673, 685, 691
LmnI	GCTCC	1 cut(s)	292
LweI	GCATC	1 cut(s)	414
MaeII	ACGT	2 cut(s)	114, 461
MalI	GATC	6 cut(s)	35, 302, 320, 675, 687, 693
MbiI	CCGCTC	1 cut(s)	295
MboI	GATC	6 cut(s)	33, 300, 318, 673, 685, 691
MboII	GAAGA	2 cut(s)	29, 73
MflI	RGATCY	1 cut(s)	300
MluCI	AATT	6 cut(s)	25, 81, 157, 502, 592, 730
MlyI	GAGTC	1 cut(s)	553
MnlI	CCTC	6 cut(s)	141, 152, 502, 575, 578, 594
MroI	TCCGGA	1 cut(s)	100
MseI	TTAA	3 cut(s)	24, 375, 591
MslI	CAYNNNNRTG	1 cut(s)	113
MspI	CCGG	2 cut(s)	101, 239
MspR9I	CCNGG	2 cut(s)	239, 344
MvaI	CCWGG	1 cut(s)	344
MvnI	CGCG	5 cut(s)	70, 72, 120, 133, 135
MwoI	GCNNNNNNNGC	2 cut(s)	481, 566
NciI	CCSGG	1 cut(s)	239
NcoI	CCATGG	1 cut(s)	656
NdeI	CATATG	1 cut(s)	251
NdeII	GATC	6 cut(s)	33, 300, 318, 673, 685, 691
NlaIII	CATG	5 cut(s)	148, 276, 372, 627, 660
NlaIV	GGNNCC	1 cut(s)	302
NspV	TTCGAA	1 cut(s)	487
PagI	TCATGA	1 cut(s)	144
PkrI	GCNGC	1 cut(s)	44
PleI	GAGTC	1 cut(s)	552
PpsI	GAGTC	1 cut(s)	552
Ppu21I	YACGTR	1 cut(s)	115
PshAI	GACNNNNGTC	1 cut(s)	134
PsiI	TTATAA	1 cut(s)	455
Psp6I	CCWGG	1 cut(s)	342
PspFI	CCCAGC	1 cut(s)	282
PspGI	CCWGG	1 cut(s)	342
PspN4I	GGNNCC	1 cut(s)	302
PspPI	GGNCC	1 cut(s)	236
PsuI	RGATCY	1 cut(s)	300
RsaI	GTAC	1 cut(s)	49
RsaNI	GTAC	1 cut(s)	48
RseI	CAYNNNNRTG	1 cut(s)	113
SalI	GTCGAC	2 cut(s)	137, 313
SaqAI	TTAA	3 cut(s)	24, 375, 591
SatI	GCNGC	1 cut(s)	43
Sau3AI	GATC	6 cut(s)	33, 300, 318, 673, 685, 691
Sau96I	GGNCC	1 cut(s)	236
SchI	GAGTC	1 cut(s)	553
ScrFI	CCNGG	2 cut(s)	239, 344
SetI	ASST	5 cut(s)	117, 144, 394, 450, 464
SfaNI	GCATC	1 cut(s)	414
SfuI	TTCGAA	1 cut(s)	487
SmiMI	CAYNNNNRTG	1 cut(s)	113
SmlI	CTYRAG	1 cut(s)	256
SmoI	CTYRAG	1 cut(s)	256
Sse9I	AATT	6 cut(s)	25, 81, 157, 502, 592, 730
SsiI	CCGC	5 cut(s)	42, 120, 164, 185, 295
StyD4I	CCNGG	2 cut(s)	237, 342
StyI	CCWWGG	1 cut(s)	656
TaaI	ACNGT	1 cut(s)	52
TaiI	ACGT	2 cut(s)	117, 464
TaqI	TCGA	5 cut(s)	138, 314, 487, 507, 522
TasI	AATT	6 cut(s)	25, 81, 157, 502, 592, 730
TatI	WGTACW	1 cut(s)	47
TauI	GCSGC	1 cut(s)	45
Tru1I	TTAA	3 cut(s)	24, 375, 591
Tru9I	TTAA	3 cut(s)	24, 375, 591
TspDTI	ATGAA	5 cut(s)	17, 393, 456, 505, 612
TspGWI	ACGGA	1 cut(s)	594
XapI	RAATTY	3 cut(s)	81, 157, 502
XmiI	GTMKAC	4 cut(s)	54, 138, 314, 652

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.