Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0000808

Physical Location & Seq

Genomic Coordinates Reverse (-)

47317031 .. 47318282

Gene Structure 1252 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG192100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGACCGAACCAACCTTCAAGCAATTCGACATCGTTTCCGATCACTCAGACCACAACTACAGTAAGGAGGAAAAGCAAGGGCAGGGGAAGAAGAACAACAAAAGCGGAGATGGAGATTGTTTCACCAACAGTGGCAGTTCTGTATACAAGAAGATCATGCGTGAGTGGAAAATTTTGGAGAATGGTCTCCCGGACACAATCTATGTGCGCGTGTACGAGAAGCGCGTCGACCTGATGAGGGCGGTGATTGTCGGAGCAGCCGGCACACCTTACCACGATGGCCTCTATTTCTTTGACATTAAGTTTCCGACTAACTATCCGAACCGCCCGCCTCAAGTCCATTACCGGTCGCACGGGTTAAGTACGAACGAGCACCTAGGGGTGAACGGACATATCTGCTTGAGCCTTCTCAACACCTGGATTGGTTGGGGGAAGGAGCGGTGGGTTCCATCTCAGTCGACGATTCTCCAAGTTCTTGTGTCAATCCAGGCGTTCGTTCTCAATGCCAAGGCCGAGTACCTCTCTGACAATGAGGTTGTTTTTATAAACAAATGCATATCGACGGTGCATTTGCTCCGAAATCCTCCAAAGAATTTTGAGGGATTCATTGCTGGACATTTTCGTAGTAAAGCACCTGACATATTGAGAGCCTACATCGCTTATGCAAATGGGCGCGTGCTTGTAGGGCACTACAACAATGAGACTGAGGTGGCATGCCTTACTGCGGAAAATAATTCACGTTACTATGTTACCGAGACGTTCAAGGACCGGATGGAGGAGCTGTACCCAGAAATTGAGCATCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0031625 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044424 GO:0044444 GO:0044464 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

268

Amino Acids

30.7

Weight (kDa)

6.83

Isoelectric Point (pI)

40.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	52 - 175	3e-20	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000808)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g01260 FvH4_4g19890 FvH4_4g19900 FvH4_4g19910 FvH4_4g23111
malus_domestica	MD16G1152700.v1.1
prunus_persica	Prupe.1G115900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0415111 RchiOBHm_Chr4g0421801 RchiOBHm_Chr4g0425521 RchiOBHm_Chr4g0425551
rosa_laevigata	RLG00000007355 RLG00000007357 RLG00000007358 RLG00000007360 RLG00000007361 RLG00000007364 RLG00000007366 RLG00000007640 RLG00000008097 RLG00000022500
rosa_multiflora	Rmu_co8278857.1_g000001 Rmu_sc0000635.1_g000001 Rmu_sc0000709.1_g000009 Rmu_sc0001900.1_g000008 Rmu_sc0001900.1_g000009 Rmu_sc0003748.1_g000014 Rmu_sc0008440.1_g000003 Rmu_sc0010306.1_g000005 Rmu_sc0012856.1_g000010 Rmu_sc0032188.1_g000001
rosa_roxburghii	Rroxscaffold_5G00364100 Rroxscaffold_5G00367460 Rroxscaffold_5G00367480 Rroxscaffold_5G00367490 Rroxscaffold_5G00367510 Rroxscaffold_5G00371110
rosa_rugosa	Rorug04G0176300 Rorug04G0203700 Rorug04G0203800 Rorug04G0203800 Rorug04G0203900 Rorug06G0289400
rosa_samantha	Rh4AG192100 Rh4AG235200 Rh4AG236000 Rh4AG260700 Rh4AG260900 Rh4BG190000 Rh4BG238700 Rh4BG266400 Rh4BG266600 Rh4BG266700 Rh4CG202900 Rh4CG250700 Rh4CG277700 Rh4CG277900 Rh4CG278000 Rh4DG235300 Rh4DG262700 Rh4DG262900 Rh4DG263100 Rh6BG409300 Rh6DG401700
rosa_wichuraiana	Rw4G016340 Rw4G019840 Rw4G022570 Rw4G022580 Rw4G022590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	545
AccBSI	CCGCTC	1 cut(s)	439
AccI	GTMKAC	3 cut(s)	144, 228, 458
AccII	CGCG	3 cut(s)	210, 225, 675
AciI	CCGC	6 cut(s)	105, 242, 325, 329, 439, 725
AcsI	RAATTY	2 cut(s)	171, 592
AfaI	GTAC	4 cut(s)	215, 364, 518, 785
AfiI	CCNNNNNNNGG	3 cut(s)	238, 724, 775
AgeI	ACCGGT	1 cut(s)	345
AgsI	TTSAA	2 cut(s)	19, 763
AjnI	CCWGG	2 cut(s)	416, 486
AluBI	AGCT	1 cut(s)	781
AluI	AGCT	1 cut(s)	781
Alw21I	GWGCWC	1 cut(s)	375
Alw26I	GTCTC	3 cut(s)	191, 695, 749
AoxI	GGCC	2 cut(s)	280, 510
ApeKI	GCWGC	1 cut(s)	257
ApoI	RAATTY	2 cut(s)	171, 592
ArsI	GACNNNNNNTTYG	2 cut(s)	553, 585
AsiGI	ACCGGT	1 cut(s)	345
AspA2I	CCTAGG	1 cut(s)	376
AspLEI	GCGC	3 cut(s)	210, 225, 675
AspS9I	GGNCC	1 cut(s)	766
AsuC2I	CCSGG	1 cut(s)	191
AsuHPI	GGTGA	3 cut(s)	115, 256, 394
AvaII	GGWCC	1 cut(s)	766
AvrII	CCTAGG	1 cut(s)	376
BaeGI	GKGCMC	1 cut(s)	690
Bbv12I	GWGCWC	1 cut(s)	375
BbvI	GCAGC	1 cut(s)	269
BccI	CCATC	4 cut(s)	104, 272, 457, 766
BciT130I	CCWGG	2 cut(s)	418, 488
BcnI	CCSGG	1 cut(s)	191
BcoDI	GTCTC	3 cut(s)	191, 695, 749
BfaI	CTAG	1 cut(s)	377
BfmI	CTRYAG	1 cut(s)	58
BisI	GCNGC	1 cut(s)	258
BlnI	CCTAGG	1 cut(s)	376
BlsI	GCNGC	1 cut(s)	259
Bme1390I	CCNGG	3 cut(s)	191, 418, 488
Bme18I	GGWCC	1 cut(s)	766
BmgT120I	GGNCC	1 cut(s)	766
BmiI	GGNNCC	1 cut(s)	447
BmrFI	CCNGG	3 cut(s)	191, 418, 488
BplI	GAGNNNNNCTC	2 cut(s)	506, 538
BpuEI	CTTGAG	2 cut(s)	318, 421
BpuMI	CCSGG	1 cut(s)	191
BsaI	GGTCTC	1 cut(s)	191
BsaJI	CCNNGG	2 cut(s)	376, 507
BsaWI	WCCGGW	2 cut(s)	345, 768
BsaXI	ACNNNNNCTCC	2 cut(s)	767, 797
Bsc4I	CCNNNNNNNGG	3 cut(s)	238, 724, 775
Bse118I	RCCGGY	2 cut(s)	260, 345
Bse3DI	GCAATG	1 cut(s)	606
BseBI	CCWGG	2 cut(s)	418, 488
BseDI	CCNNGG	2 cut(s)	376, 507
BseGI	GGATG	2 cut(s)	777, 799
BseLI	CCNNNNNNNGG	3 cut(s)	238, 724, 775
BseMI	GCAATG	1 cut(s)	606
BseMII	CTCAG	3 cut(s)	60, 467, 696
BseRI	GAGGAG	1 cut(s)	791
BseSI	GKGCMC	1 cut(s)	690
BseXI	GCAGC	1 cut(s)	269
Bsh1236I	CGCG	3 cut(s)	210, 225, 675
Bsh1285I	CGRYCG	1 cut(s)	350
BshFI	GGCC	2 cut(s)	282, 512
BshTI	ACCGGT	1 cut(s)	345
BsiEI	CGRYCG	1 cut(s)	350
BsiHKAI	GWGCWC	1 cut(s)	375
BsiSI	CCGG	4 cut(s)	191, 261, 346, 769
BslI	CCNNNNNNNGG	3 cut(s)	238, 724, 775
BsmAI	GTCTC	3 cut(s)	191, 695, 749
BsmBI	CGTCTC	1 cut(s)	749
BsnI	GGCC	2 cut(s)	282, 512
Bso31I	GGTCTC	1 cut(s)	191
Bsp1286I	GDGCHC	2 cut(s)	375, 690
Bsp143I	GATC	2 cut(s)	40, 153
BspACI	CCGC	6 cut(s)	105, 242, 325, 329, 439, 725
BspANI	GGCC	2 cut(s)	282, 512
BspCNI	CTCAG	3 cut(s)	59, 466, 697
BspFNI	CGCG	3 cut(s)	210, 225, 675
BspLI	GGNNCC	1 cut(s)	447
BspTNI	GGTCTC	1 cut(s)	191
BsrBI	CCGCTC	1 cut(s)	439
BsrDI	GCAATG	1 cut(s)	606
BsrFI	RCCGGY	2 cut(s)	260, 345
BssAI	RCCGGY	2 cut(s)	260, 345
BssECI	CCNNGG	2 cut(s)	376, 507
BssMI	GATC	2 cut(s)	40, 153
BssNAI	GTATAC	1 cut(s)	145
BssT1I	CCWWGG	2 cut(s)	376, 507
Bst1107I	GTATAC	1 cut(s)	145
Bst2UI	CCWGG	2 cut(s)	418, 488
Bst4CI	ACNGT	3 cut(s)	62, 131, 565
BstC8I	GCNNGC	4 cut(s)	262, 329, 677, 715
BstDEI	CTNAG	3 cut(s)	46, 453, 705
BstF5I	GGATG	2 cut(s)	777, 799
BstFNI	CGCG	3 cut(s)	210, 225, 675
BstHHI	GCGC	3 cut(s)	210, 225, 675
BstKTI	GATC	2 cut(s)	43, 156
BstMAI	GTCTC	3 cut(s)	191, 695, 749
BstMBI	GATC	2 cut(s)	40, 153
BstMCI	CGRYCG	1 cut(s)	350
BstMWI	GCNNNNNNNGC	2 cut(s)	656, 685
BstNI	CCWGG	2 cut(s)	418, 488
BstNSI	RCATGY	1 cut(s)	717
BstSCI	CCNGG	3 cut(s)	189, 416, 486
BstSFI	CTRYAG	1 cut(s)	58
BstSLI	GKGCMC	1 cut(s)	690
BstUI	CGCG	3 cut(s)	210, 225, 675
BstV1I	GCAGC	1 cut(s)	269
BstZ17I	GTATAC	1 cut(s)	145
BsuRI	GGCC	2 cut(s)	282, 512
BtgZI	GCGATG	1 cut(s)	640
BtsCI	GGATG	2 cut(s)	777, 799
BtsIMutI	CAGTG	1 cut(s)	136
Cac8I	GCNNGC	4 cut(s)	262, 329, 677, 715
CfoI	GCGC	3 cut(s)	210, 225, 675
Cfr10I	RCCGGY	2 cut(s)	260, 345
Cfr13I	GGNCC	1 cut(s)	766
CseI	GACGC	1 cut(s)	214
Csp6I	GTAC	4 cut(s)	214, 363, 517, 784
CspAI	ACCGGT	1 cut(s)	345
CviAII	CATG	2 cut(s)	157, 714
CviJI	RGCY	6 cut(s)	260, 282, 405, 512, 650, 781
CviKI_1	RGCY	6 cut(s)	260, 282, 405, 512, 650, 781
CviQI	GTAC	4 cut(s)	214, 363, 517, 784
DdeI	CTNAG	3 cut(s)	46, 453, 705
DpnI	GATC	2 cut(s)	42, 155
DpnII	GATC	2 cut(s)	40, 153
Eco130I	CCWWGG	2 cut(s)	376, 507
Eco31I	GGTCTC	1 cut(s)	191
Eco47I	GGWCC	1 cut(s)	766
EcoRII	CCWGG	2 cut(s)	416, 486
EcoT14I	CCWWGG	2 cut(s)	376, 507
EcoT22I	ATGCAT	1 cut(s)	557
ErhI	CCWWGG	2 cut(s)	376, 507
Esp3I	CGTCTC	1 cut(s)	749
FaeI	CATG	2 cut(s)	160, 717
FatI	CATG	2 cut(s)	156, 713
FauI	CCCGC	1 cut(s)	336
FblI	GTMKAC	3 cut(s)	144, 228, 458
Fnu4HI	GCNGC	1 cut(s)	258
FokI	GGATG	2 cut(s)	784, 786
Fsp4HI	GCNGC	1 cut(s)	258
FspBI	CTAG	1 cut(s)	377
GlaI	GCGC	3 cut(s)	209, 224, 674
GluI	GCNGC	1 cut(s)	258
HaeIII	GGCC	2 cut(s)	282, 512
HapII	CCGG	4 cut(s)	191, 261, 346, 769
HgaI	GACGC	1 cut(s)	214
HhaI	GCGC	3 cut(s)	210, 225, 675
Hin1II	CATG	2 cut(s)	160, 717
Hin6I	GCGC	3 cut(s)	208, 223, 673
HinP1I	GCGC	3 cut(s)	208, 223, 673
HincII	GTYRAC	2 cut(s)	229, 459
HindII	GTYRAC	2 cut(s)	229, 459
HinfI	GANTC	2 cut(s)	463, 603
HpaII	CCGG	4 cut(s)	191, 261, 346, 769
HphI	GGTGA	3 cut(s)	115, 256, 394
Hpy166II	GTNNAC	5 cut(s)	145, 214, 229, 385, 459
Hpy188I	TCNGA	7 cut(s)	40, 49, 254, 309, 321, 526, 578
Hpy8I	GTNNAC	5 cut(s)	145, 214, 229, 385, 459
Hpy99I	CGWCG	3 cut(s)	230, 463, 565
HpyAV	CCTTC	3 cut(s)	25, 416, 427
HpyCH4III	ACNGT	3 cut(s)	62, 131, 565
HpyCH4IV	ACGT	2 cut(s)	739, 758
HpyCH4V	TGCA	3 cut(s)	555, 568, 665
HpyF10VI	GCNNNNNNNGC	2 cut(s)	656, 685
HpyF3I	CTNAG	3 cut(s)	46, 453, 705
HpySE526I	ACGT	2 cut(s)	739, 758
Hsp92II	CATG	2 cut(s)	160, 717
HspAI	GCGC	3 cut(s)	208, 223, 673
KroI	GCCGGC	1 cut(s)	260
KroNI	GCCGGC	1 cut(s)	262
Kzo9I	GATC	2 cut(s)	40, 153
LmnI	GCTCC	4 cut(s)	254, 436, 579, 778
Lsp1109I	GCAGC	1 cut(s)	269
MaeI	CTAG	1 cut(s)	377
MaeII	ACGT	2 cut(s)	739, 758
MaeIII	GTNAC	2 cut(s)	740, 748
MalI	GATC	2 cut(s)	42, 155
MbiI	CCGCTC	1 cut(s)	439
MboI	GATC	2 cut(s)	40, 153
MboII	GAAGA	3 cut(s)	100, 103, 163
MhlI	GDGCHC	2 cut(s)	375, 690
MluCI	AATT	5 cut(s)	23, 171, 592, 733, 792
MmeI	TCCRAC	2 cut(s)	232, 332
Mph1103I	ATGCAT	1 cut(s)	557
MroNI	GCCGGC	1 cut(s)	260
MseI	TTAA	2 cut(s)	300, 359
MspI	CCGG	4 cut(s)	191, 261, 346, 769
MspR9I	CCNGG	3 cut(s)	191, 418, 488
MvaI	CCWGG	2 cut(s)	418, 488
MvnI	CGCG	3 cut(s)	210, 225, 675
MwoI	GCNNNNNNNGC	2 cut(s)	656, 685
NaeI	GCCGGC	1 cut(s)	262
NciI	CCSGG	1 cut(s)	191
NdeII	GATC	2 cut(s)	40, 153
NgoMIV	GCCGGC	1 cut(s)	260
NlaIII	CATG	2 cut(s)	160, 717
NlaIV	GGNNCC	1 cut(s)	447
NmeAIII	GCCGAG	1 cut(s)	538
NsiI	ATGCAT	1 cut(s)	557
NspI	RCATGY	1 cut(s)	717
PaeI	GCATGC	1 cut(s)	717
PcsI	WCGNNNNNNNCGW	1 cut(s)	222
PdiI	GCCGGC	1 cut(s)	262
PfeI	GAWTC	2 cut(s)	463, 603
PfoI	TCCNGGA	1 cut(s)	189
PinAI	ACCGGT	1 cut(s)	345
PkrI	GCNGC	1 cut(s)	259
PsiI	TTATAA	1 cut(s)	545
Psp6I	CCWGG	2 cut(s)	416, 486
PspGI	CCWGG	2 cut(s)	416, 486
PspN4I	GGNNCC	1 cut(s)	447
PspPI	GGNCC	1 cut(s)	766
RsaI	GTAC	4 cut(s)	215, 364, 518, 785
RsaNI	GTAC	4 cut(s)	214, 363, 517, 784
SalI	GTCGAC	2 cut(s)	227, 457
SaqAI	TTAA	2 cut(s)	300, 359
SatI	GCNGC	1 cut(s)	258
Sau3AI	GATC	2 cut(s)	40, 153
Sau96I	GGNCC	1 cut(s)	766
ScrFI	CCNGG	3 cut(s)	191, 418, 488
SduI	GDGCHC	2 cut(s)	375, 690
SfcI	CTRYAG	1 cut(s)	58
SinI	GGWCC	1 cut(s)	766
SmlI	CTYRAG	2 cut(s)	333, 400
SmoI	CTYRAG	2 cut(s)	333, 400
SphI	GCATGC	1 cut(s)	717
Sse9I	AATT	5 cut(s)	23, 171, 592, 733, 792
SsiI	CCGC	6 cut(s)	105, 242, 325, 329, 439, 725
SspMI	CTAG	1 cut(s)	377
StyD4I	CCNGG	3 cut(s)	189, 416, 486
StyI	CCWWGG	2 cut(s)	376, 507
TaaI	ACNGT	3 cut(s)	62, 131, 565
TaiI	ACGT	2 cut(s)	742, 761
TaqI	TCGA	4 cut(s)	27, 228, 458, 560
TaqII	GACCGA	1 cut(s)	20
TasI	AATT	5 cut(s)	23, 171, 592, 733, 792
TfiI	GAWTC	2 cut(s)	463, 603
Tru1I	TTAA	2 cut(s)	300, 359
Tru9I	TTAA	2 cut(s)	300, 359
TscAI	CASTG	1 cut(s)	136
TseI	GCWGC	1 cut(s)	257
TspDTI	ATGAA	1 cut(s)	595
TspGWI	ACGGA	1 cut(s)	402
TspRI	CASTG	1 cut(s)	136
VpaK11BI	GGWCC	1 cut(s)	766
XapI	RAATTY	2 cut(s)	171, 592
XceI	RCATGY	1 cut(s)	717
XmaJI	CCTAGG	1 cut(s)	376
XmiI	GTMKAC	3 cut(s)	144, 228, 458
XspI	CTAG	1 cut(s)	377
Zsp2I	ATGCAT	1 cut(s)	557

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.