Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0000808

Physical Location & Seq

Genomic Coordinates Forward (+)

23386606 .. 23387462

Gene Structure 857 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g19900.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGGAGAGTTTCTCCAGATTCAACGTTGTCTCGGACCACTCTGACCACCACTACACCTCCACTAAGGGCACCGACGGTGGCAAAACAGCCATTACTGATATCATGCGCGAGTGGAAAATACTAAGCAAGAACCTCCCGGTCTCGACCTATGTGCGTGTGTACAGCACTCGCATCGACCTAATGAGGGCCGTGATCGTCGGAGCCGCCGGCACGCCCTACCACGACGGACTGTTCTTCTTCGACATCAAGTTCCCGCTCAACTACCCCTTGCAACCGCCACTTGTCCATTACCATTCCCATGGGTTGAGACTCAACCCTAATCTTTATGAGAACGGCAAAGAGGCGAAGTCCCGTCATTACAACGAGGAAGCGTTCATCAAAACGTGCCGGACGACGATTTATTTGCTCCAAAAACCACCGAAGAATTTCGAGCTCTTCACCGCCGAGCATTTTCGACTGAGAGCAAATCGGATACTGAGAGCTTGTAATGCGTGCGCTAACAGTCGTGTGGGAGTCGGTCACTGCAGGGATGACAATGATGATGCAACTAAGGATGATAGTAAAGTACTCTCTGCAATTTCAGGTCACCGTGTTTCGGCCACGTTTATAAACTCGATGGAACAGTTGTACCCGAAGCTTGTGGCTGTTTTTACACATAACATGGCCTCAAATTTGGTGGAGCACTACTTTAGAGGACGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0031625 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044424 GO:0044444 GO:0044464 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

234

Amino Acids

26.64

Weight (kDa)

9.23

Isoelectric Point (pI)

34.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	34 - 113	4.3e-13	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000808)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g01260 FvH4_4g19890 FvH4_4g19900 FvH4_4g19910 FvH4_4g23111
malus_domestica	MD16G1152700.v1.1
prunus_persica	Prupe.1G115900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0415111 RchiOBHm_Chr4g0421801 RchiOBHm_Chr4g0425521 RchiOBHm_Chr4g0425551
rosa_laevigata	RLG00000007355 RLG00000007357 RLG00000007358 RLG00000007360 RLG00000007361 RLG00000007364 RLG00000007366 RLG00000007640 RLG00000008097 RLG00000022500
rosa_multiflora	Rmu_co8278857.1_g000001 Rmu_sc0000635.1_g000001 Rmu_sc0000709.1_g000009 Rmu_sc0001900.1_g000008 Rmu_sc0001900.1_g000009 Rmu_sc0003748.1_g000014 Rmu_sc0008440.1_g000003 Rmu_sc0010306.1_g000005 Rmu_sc0012856.1_g000010 Rmu_sc0032188.1_g000001
rosa_roxburghii	Rroxscaffold_5G00364100 Rroxscaffold_5G00367460 Rroxscaffold_5G00367480 Rroxscaffold_5G00367490 Rroxscaffold_5G00367510 Rroxscaffold_5G00371110
rosa_rugosa	Rorug04G0176300 Rorug04G0203700 Rorug04G0203800 Rorug04G0203800 Rorug04G0203900 Rorug06G0289400
rosa_samantha	Rh4AG192100 Rh4AG235200 Rh4AG236000 Rh4AG260700 Rh4AG260900 Rh4BG190000 Rh4BG238700 Rh4BG266400 Rh4BG266600 Rh4BG266700 Rh4CG202900 Rh4CG250700 Rh4CG277700 Rh4CG277900 Rh4CG278000 Rh4DG235300 Rh4DG262700 Rh4DG262900 Rh4DG263100 Rh6BG409300 Rh6DG401700
rosa_wichuraiana	Rw4G016340 Rw4G019840 Rw4G022570 Rw4G022580 Rw4G022590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	608
AccB1I	GGYRCC	1 cut(s)	68
AccBSI	CCGCTC	1 cut(s)	256
AccII	CGCG	1 cut(s)	108
AciI	CCGC	4 cut(s)	204, 254, 275, 441
AclI	AACGTT	1 cut(s)	24
AcoI	YGGCCR	1 cut(s)	597
AcsI	RAATTY	2 cut(s)	424, 670
AfaI	GTAC	3 cut(s)	161, 567, 629
AfiI	CCNNNNNNNGG	2 cut(s)	184, 595
AgsI	TTSAA	1 cut(s)	22
AluBI	AGCT	3 cut(s)	433, 482, 637
AluI	AGCT	3 cut(s)	433, 482, 637
Alw21I	GWGCWC	2 cut(s)	435, 684
Alw26I	GTCTC	3 cut(s)	34, 145, 301
AoxI	GGCC	3 cut(s)	186, 597, 663
ApoI	RAATTY	2 cut(s)	424, 670
ArsI	GACNNNNNNTTYG	2 cut(s)	385, 417
Asp700I	GAANNNNTTC	1 cut(s)	425
AspLEI	GCGC	2 cut(s)	108, 497
AspS9I	GGNCC	2 cut(s)	34, 186
AsuC2I	CCSGG	1 cut(s)	137
AsuHPI	GGTGA	2 cut(s)	430, 578
AvaII	GGWCC	1 cut(s)	34
BaeGI	GKGCMC	1 cut(s)	71
BaeI	ACNNNNGTAYC	2 cut(s)	611, 644
BanI	GGYRCC	1 cut(s)	68
BanII	GRGCYC	1 cut(s)	435
Bbv12I	GWGCWC	2 cut(s)	435, 684
BccI	CCATC	1 cut(s)	610
BceAI	ACGGC	2 cut(s)	173, 349
BcgI	CGANNNNNNTGC	6 cut(s)	133, 154, 167, 188, 385, 419
BciVI	GTATCC	1 cut(s)	465
BcnI	CCSGG	1 cut(s)	137
BcoDI	GTCTC	3 cut(s)	34, 145, 301
BfmI	CTRYAG	1 cut(s)	523
BfuI	GTATCC	1 cut(s)	465
BisI	GCNGC	1 cut(s)	204
BlsI	GCNGC	1 cut(s)	205
BmcAI	AGTACT	1 cut(s)	567
Bme1390I	CCNGG	1 cut(s)	137
Bme18I	GGWCC	1 cut(s)	34
BmgT120I	GGNCC	2 cut(s)	34, 186
BmiI	GGNNCC	2 cut(s)	70, 202
BmrFI	CCNGG	1 cut(s)	137
BmsI	GCATC	2 cut(s)	180, 532
BplI	GAGNNNNNCTC	1 cut(s)	28
BpuMI	CCSGG	1 cut(s)	137
BsaI	GGTCTC	1 cut(s)	145
BsaJI	CCNNGG	1 cut(s)	298
BsaXI	ACNNNNNCTCC	2 cut(s)	41, 71
Bsc4I	CCNNNNNNNGG	2 cut(s)	184, 595
Bse118I	RCCGGY	1 cut(s)	206
BseDI	CCNNGG	1 cut(s)	298
BseGI	GGATG	2 cut(s)	535, 559
BseLI	CCNNNNNNNGG	2 cut(s)	184, 595
BseMII	CTCAG	2 cut(s)	449, 467
BseSI	GKGCMC	1 cut(s)	71
Bsh1236I	CGCG	1 cut(s)	108
BshFI	GGCC	3 cut(s)	188, 599, 665
BshNI	GGYRCC	1 cut(s)	68
BsiHKAI	GWGCWC	2 cut(s)	435, 684
BsiSI	CCGG	3 cut(s)	137, 207, 388
BslFI	GGGAC	1 cut(s)	334
BslI	CCNNNNNNNGG	2 cut(s)	184, 595
BsmAI	GTCTC	3 cut(s)	34, 145, 301
BsmFI	GGGAC	1 cut(s)	334
BsnI	GGCC	3 cut(s)	188, 599, 665
Bso31I	GGTCTC	1 cut(s)	145
Bsp1286I	GDGCHC	3 cut(s)	71, 435, 684
Bsp1407I	TGTACA	1 cut(s)	159
Bsp143I	GATC	1 cut(s)	192
Bsp19I	CCATGG	1 cut(s)	298
BspACI	CCGC	4 cut(s)	204, 254, 275, 441
BspANI	GGCC	3 cut(s)	188, 599, 665
BspCNI	CTCAG	2 cut(s)	450, 468
BspFNI	CGCG	1 cut(s)	108
BspLI	GGNNCC	2 cut(s)	70, 202
BspMAI	CTGCAG	1 cut(s)	527
BspQI	GCTCTTC	1 cut(s)	440
BspT107I	GGYRCC	1 cut(s)	68
BspTNI	GGTCTC	1 cut(s)	145
BsrBI	CCGCTC	1 cut(s)	256
BsrFI	RCCGGY	1 cut(s)	206
BsrGI	TGTACA	1 cut(s)	159
BssAI	RCCGGY	1 cut(s)	206
BssECI	CCNNGG	1 cut(s)	298
BssMI	GATC	1 cut(s)	192
BssT1I	CCWWGG	1 cut(s)	298
Bst4CI	ACNGT	5 cut(s)	77, 231, 503, 590, 624
Bst6I	CTCTTC	1 cut(s)	440
BstAUI	TGTACA	1 cut(s)	159
BstC8I	GCNNGC	3 cut(s)	208, 212, 493
BstDEI	CTNAG	5 cut(s)	63, 122, 458, 476, 549
BstDSI	CCRYGG	1 cut(s)	298
BstEII	GGTNACC	1 cut(s)	584
BstF5I	GGATG	2 cut(s)	535, 559
BstFNI	CGCG	1 cut(s)	108
BstHHI	GCGC	2 cut(s)	108, 497
BstKTI	GATC	1 cut(s)	195
BstMAI	GTCTC	3 cut(s)	34, 145, 301
BstMBI	GATC	1 cut(s)	192
BstMWI	GCNNNNNNNGC	1 cut(s)	488
BstPI	GGTNACC	1 cut(s)	584
BstSCI	CCNGG	1 cut(s)	135
BstSFI	CTRYAG	1 cut(s)	523
BstSLI	GKGCMC	1 cut(s)	71
BstUI	CGCG	1 cut(s)	108
BstXI	CCANNNNNNTGG	1 cut(s)	299
BsuI	GTATCC	1 cut(s)	465
BsuRI	GGCC	3 cut(s)	188, 599, 665
BtgI	CCRYGG	1 cut(s)	298
BtsCI	GGATG	2 cut(s)	535, 559
BtsI	GCAGTG	1 cut(s)	520
BtsIMutI	CAGTG	1 cut(s)	520
Cac8I	GCNNGC	3 cut(s)	208, 212, 493
CfoI	GCGC	2 cut(s)	108, 497
Cfr10I	RCCGGY	1 cut(s)	206
Cfr13I	GGNCC	2 cut(s)	34, 186
Csp6I	GTAC	3 cut(s)	160, 566, 628
CspCI	CAANNNNNGTGG	2 cut(s)	657, 692
CviAII	CATG	3 cut(s)	103, 299, 661
CviJI	RGCY	9 cut(s)	89, 188, 203, 433, 482, 599, 637, 644, 665
CviKI_1	RGCY	9 cut(s)	89, 188, 203, 433, 482, 599, 637, 644, 665
CviQI	GTAC	3 cut(s)	160, 566, 628
DdeI	CTNAG	5 cut(s)	63, 122, 458, 476, 549
DpnI	GATC	1 cut(s)	194
DpnII	GATC	1 cut(s)	192
EaeI	YGGCCR	1 cut(s)	597
Eam1104I	CTCTTC	1 cut(s)	440
EarI	CTCTTC	1 cut(s)	440
Ecl136II	GAGCTC	1 cut(s)	433
Eco130I	CCWWGG	1 cut(s)	298
Eco24I	GRGCYC	1 cut(s)	435
Eco31I	GGTCTC	1 cut(s)	145
Eco32I	GATATC	1 cut(s)	100
Eco47I	GGWCC	1 cut(s)	34
Eco53kI	GAGCTC	1 cut(s)	433
Eco91I	GGTNACC	1 cut(s)	584
EcoICRI	GAGCTC	1 cut(s)	433
EcoO65I	GGTNACC	1 cut(s)	584
EcoRV	GATATC	1 cut(s)	100
EcoT14I	CCWWGG	1 cut(s)	298
EcoT38I	GRGCYC	1 cut(s)	435
ErhI	CCWWGG	1 cut(s)	298
FaeI	CATG	3 cut(s)	106, 302, 664
FaiI	YATR	7 cut(s)	104, 150, 300, 327, 608, 657, 662
FaqI	GGGAC	1 cut(s)	334
FatI	CATG	3 cut(s)	102, 298, 660
FauI	CCCGC	1 cut(s)	261
Fnu4HI	GCNGC	1 cut(s)	204
FokI	GGATG	2 cut(s)	542, 566
FriOI	GRGCYC	1 cut(s)	435
Fsp4HI	GCNGC	1 cut(s)	204
GlaI	GCGC	2 cut(s)	107, 496
GluI	GCNGC	1 cut(s)	204
HaeIII	GGCC	3 cut(s)	188, 599, 665
HapII	CCGG	3 cut(s)	137, 207, 388
HhaI	GCGC	2 cut(s)	108, 497
Hin1II	CATG	3 cut(s)	106, 302, 664
Hin6I	GCGC	2 cut(s)	106, 495
HinP1I	GCGC	2 cut(s)	106, 495
HindIII	AAGCTT	1 cut(s)	635
HinfI	GANTC	3 cut(s)	18, 309, 513
HpaII	CCGG	3 cut(s)	137, 207, 388
HphI	GGTGA	2 cut(s)	430, 578
Hpy166II	GTNNAC	1 cut(s)	160
Hpy188I	TCNGA	4 cut(s)	34, 43, 200, 471
Hpy188III	TCNNGA	2 cut(s)	15, 142
Hpy8I	GTNNAC	1 cut(s)	160
Hpy99I	CGWCG	4 cut(s)	77, 200, 227, 397
HpyCH4III	ACNGT	5 cut(s)	77, 231, 503, 590, 624
HpyCH4IV	ACGT	4 cut(s)	24, 383, 602, 697
HpyCH4V	TGCA	4 cut(s)	271, 525, 545, 575
HpyF10VI	GCNNNNNNNGC	1 cut(s)	488
HpyF3I	CTNAG	5 cut(s)	63, 122, 458, 476, 549
HpySE526I	ACGT	4 cut(s)	24, 383, 602, 697
Hsp92II	CATG	3 cut(s)	106, 302, 664
HspAI	GCGC	2 cut(s)	106, 495
KroI	GCCGGC	1 cut(s)	206
KroNI	GCCGGC	1 cut(s)	208
Kzo9I	GATC	1 cut(s)	192
LguI	GCTCTTC	1 cut(s)	440
LmnI	GCTCC	3 cut(s)	200, 411, 679
LpnPI	CCDG	6 cut(s)	28, 150, 220, 401, 511, 567
LweI	GCATC	2 cut(s)	180, 532
MaeII	ACGT	4 cut(s)	24, 383, 602, 697
MaeIII	GTNAC	2 cut(s)	518, 584
MalI	GATC	1 cut(s)	194
MbiI	CCGCTC	1 cut(s)	256
MboI	GATC	1 cut(s)	192
MboII	GAAGA	4 cut(s)	226, 229, 427, 433
MhlI	GDGCHC	3 cut(s)	71, 435, 684
MluCI	AATT	3 cut(s)	424, 576, 670
MlyI	GAGTC	2 cut(s)	303, 522
MmeI	TCCRAC	1 cut(s)	178
MnlI	CCTC	7 cut(s)	67, 143, 177, 334, 358, 676, 686
MroNI	GCCGGC	1 cut(s)	206
MroXI	GAANNNNTTC	1 cut(s)	425
MseI	TTAA	1 cut(s)	700
MslI	CAYNNNNRTG	1 cut(s)	297
MspI	CCGG	3 cut(s)	137, 207, 388
MspR9I	CCNGG	1 cut(s)	137
MvnI	CGCG	1 cut(s)	108
MwoI	GCNNNNNNNGC	1 cut(s)	488
NaeI	GCCGGC	1 cut(s)	208
NciI	CCSGG	1 cut(s)	137
NcoI	CCATGG	1 cut(s)	298
NdeII	GATC	1 cut(s)	192
NgoMIV	GCCGGC	1 cut(s)	206
NlaIII	CATG	3 cut(s)	106, 302, 664
NlaIV	GGNNCC	2 cut(s)	70, 202
NmeAIII	GCCGAG	1 cut(s)	469
NmuCI	GTSAC	2 cut(s)	518, 584
PciSI	GCTCTTC	1 cut(s)	440
PcsI	WCGNNNNNNNCGW	1 cut(s)	389
PdiI	GCCGGC	1 cut(s)	208
PdmI	GAANNNNTTC	1 cut(s)	425
PfeI	GAWTC	1 cut(s)	18
PkrI	GCNGC	1 cut(s)	205
PleI	GAGTC	2 cut(s)	303, 521
PpsI	GAGTC	2 cut(s)	303, 521
PsiI	TTATAA	1 cut(s)	608
Psp124BI	GAGCTC	1 cut(s)	435
Psp1406I	AACGTT	1 cut(s)	24
PspEI	GGTNACC	1 cut(s)	584
PspN4I	GGNNCC	2 cut(s)	70, 202
PspPI	GGNCC	2 cut(s)	34, 186
PstI	CTGCAG	1 cut(s)	527
RsaI	GTAC	3 cut(s)	161, 567, 629
RsaNI	GTAC	3 cut(s)	160, 566, 628
RseI	CAYNNNNRTG	1 cut(s)	297
SacI	GAGCTC	1 cut(s)	435
SapI	GCTCTTC	1 cut(s)	440
SaqAI	TTAA	1 cut(s)	700
SatI	GCNGC	1 cut(s)	204
Sau3AI	GATC	1 cut(s)	192
Sau96I	GGNCC	2 cut(s)	34, 186
ScaI	AGTACT	1 cut(s)	567
SchI	GAGTC	2 cut(s)	303, 522
ScrFI	CCNGG	1 cut(s)	137
SduI	GDGCHC	3 cut(s)	71, 435, 684
SfaNI	GCATC	2 cut(s)	180, 532
SfcI	CTRYAG	1 cut(s)	523
SinI	GGWCC	1 cut(s)	34
SmiMI	CAYNNNNRTG	1 cut(s)	297
Sse9I	AATT	3 cut(s)	424, 576, 670
SsiI	CCGC	4 cut(s)	204, 254, 275, 441
SstI	GAGCTC	1 cut(s)	435
StyD4I	CCNGG	1 cut(s)	135
StyI	CCWWGG	1 cut(s)	298
TaaI	ACNGT	5 cut(s)	77, 231, 503, 590, 624
TaiI	ACGT	4 cut(s)	27, 386, 605, 700
TaqI	TCGA	6 cut(s)	143, 174, 240, 429, 454, 614
TaqII	GACCGA	1 cut(s)	506
TasI	AATT	3 cut(s)	424, 576, 670
TatI	WGTACW	2 cut(s)	159, 565
TauI	GCSGC	1 cut(s)	206
TfiI	GAWTC	1 cut(s)	18
Tru1I	TTAA	1 cut(s)	700
Tru9I	TTAA	1 cut(s)	700
TscAI	CASTG	1 cut(s)	527
TseFI	GTSAC	2 cut(s)	518, 584
Tsp45I	GTSAC	2 cut(s)	518, 584
TspDTI	ATGAA	1 cut(s)	364
TspGWI	ACGGA	1 cut(s)	240
TspRI	CASTG	1 cut(s)	527
VpaK11BI	GGWCC	1 cut(s)	34
XapI	RAATTY	2 cut(s)	424, 670
XmnI	GAANNNNTTC	1 cut(s)	425
ZrmI	AGTACT	1 cut(s)	567

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.