Rroxscaffold_5G00371110

Belongs to the ubiquitin-conjugating enzyme family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
Physical Location & Seq
Reverse (-)
52751720 .. 52752772
1053 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00371110.1

Sequence Viewer

Length: 1053 bp
ATGGCCCTCTCGGTTACCAAACCTGTGTCACCTGCCTTCAAGCAATTCGACGTCGTTTCCGACCACTCAGACCACCACTACAGCTACGTGAATATGCAAGGGCAGGGGATGAACAACAGCAACGAAGATGTTAAGTATTTGATCAATAGCGGCAGTACAGTCTACAAGAAGATTATGCGCGAGTGGAAAATTTTGGAGAATGGCCTTCCGGACACCATCTACGTGCGCGGGTATGAGACACGCGTCGACCTCATGAGGGCGGTGATTGTTGGAGCAGCCGGCACACCTTACCACGAAGGCCTCTTTTTCTTCGACATCAAGTTCCCGCCTGATTATCCGAACCACCCGCCACAAGTCCATTACCGGTCGCACGGGTTGACAATAAACCCGTACATAGGCCCGAAAGGACACATATGCTTGAGCCTTCTCAACACATGGATTGGCTGGGGAAAGGAGCGGTGGGTCCCATCTCAGTCGACGATCCTACAAGTTCTGGTTTCCATCCAGGCGCTCGTTTTCAATGAGAAGCCATGCTTTAATGAAATAGGTGTAGGTTTCTTGGATTGGATTTCGGGTGTGGATGTGATGCACAACCCTTACAATGAAAAGGTGTTCATAACAACGTGCCAGTCAATGCTCTATTTGCTTCGAAATCCACCAAAGAATTTCGAGGCTTTCGTTGTCGAGTATTTTCGTCAGAGAGCGAGTCACATACTGAGAGCGTGCTTCGCTTATGCAAACGGGCACGCGGTGGTCGGGTACTACAACAACGAGATTGAGGCAAAAAATAAATCACGTCGTCACTTTGTTTGCGAGATGTTCAAGGGGTCGATGGAGAAACTGTACCCACTTCTCGTACAGGCTTTTAAAAAGAATGGGATTTCTACTGAACATTGGGTGGAGGAGGAGTTAATTGTGGAGAGGAAACCAGCAATGCCGTTTTCATGGCGTAAACTTTATTTAGTTTGTTGTTGTATACCATGGGCGAATGATGATGATGATGATCGTGATCGTGATGTGTCTTTATTGAAAAACAAAGGCGAATTAAATTGA

Protein Analysis

350

Amino Acids

40.42

Weight (kDa)

7.2

Isoelectric Point (pI)

34.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UQ_con PF00179 58 - 173 5.8e-21 Ubiquitin-conjugating enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 40
AatII GACGTC 1 cut(s) 54
Acc36I ACCTGC 1 cut(s) 40
AccBSI CCGCTC 1 cut(s) 457
AccI GTMKAC 4 cut(s) 162, 246, 476, 976
AccII CGCG 4 cut(s) 180, 228, 243, 749
AccIII TCCGGA 1 cut(s) 208
AciI CCGC 7 cut(s) 150, 228, 260, 326, 347, 457, 749
AclWI GGATC 1 cut(s) 475
AcsI RAATTY 2 cut(s) 189, 664
AcyI GRCGYC 1 cut(s) 51
AdeI CACNNNGTG 1 cut(s) 751
AfaI GTAC 5 cut(s) 157, 392, 761, 845, 858
AfiI CCNNNNNNNGG 2 cut(s) 256, 395
AflIII ACRYGT 1 cut(s) 241
AgeI ACCGGT 1 cut(s) 363
AgsI TTSAA 4 cut(s) 40, 520, 823, 1030
AjiI CACGTC 1 cut(s) 797
AjnI CCWGG 1 cut(s) 504
AluBI AGCT 1 cut(s) 84
AluI AGCT 1 cut(s) 84
Alw26I GTCTC 1 cut(s) 230
AlwI GGATC 1 cut(s) 475
Aor13HI TCCGGA 1 cut(s) 208
AoxI GGCC 4 cut(s) 3, 202, 298, 397
ApeKI GCWGC 1 cut(s) 275
ApoI RAATTY 2 cut(s) 189, 664
AsiGI ACCGGT 1 cut(s) 363
AspLEI GCGC 3 cut(s) 180, 228, 511
AspS9I GGNCC 3 cut(s) 4, 398, 463
AsuHPI GGTGA 2 cut(s) 21, 274
AsuII TTCGAA 1 cut(s) 649
AvaII GGWCC 1 cut(s) 463
BaeGI GKGCMC 1 cut(s) 747
BbvI GCAGC 1 cut(s) 287
BccI CCATC 4 cut(s) 224, 475, 509, 826
BceAI ACGGC 1 cut(s) 922
BciT130I CCWGG 1 cut(s) 506
BclI TGATCA 1 cut(s) 141
BcoDI GTCTC 1 cut(s) 230
BfmI CTRYAG 1 cut(s) 79
BfoI RGCGCY 1 cut(s) 512
BfuAI ACCTGC 1 cut(s) 40
BisI GCNGC 2 cut(s) 151, 276
BlsI GCNGC 2 cut(s) 152, 277
Bme1390I CCNGG 1 cut(s) 506
Bme18I GGWCC 1 cut(s) 463
BmgBI CACGTC 1 cut(s) 797
BmgT120I GGNCC 3 cut(s) 4, 398, 463
BmiI GGNNCC 2 cut(s) 464, 465
BmrFI CCNGG 1 cut(s) 506
BmsI GCATC 1 cut(s) 576
BoxI GACNNNNGTC 1 cut(s) 242
Bpu14I TTCGAA 1 cut(s) 649
BpuEI CTTGAG 1 cut(s) 439
BsaAI YACGTR 2 cut(s) 88, 223
BsaBI GATNNNNATC 2 cut(s) 1002, 1008
BsaHI GRCGYC 1 cut(s) 51
BsaJI CCNNGG 1 cut(s) 980
BsaWI WCCGGW 2 cut(s) 208, 363
BsaXI ACNNNNNCTCC 4 cut(s) 827, 857, 893, 923
Bsc4I CCNNNNNNNGG 2 cut(s) 256, 395
Bse118I RCCGGY 2 cut(s) 278, 363
Bse1I ACTGG 1 cut(s) 628
Bse3DI GCAATG 1 cut(s) 939
Bse8I GATNNNNATC 2 cut(s) 1002, 1008
BseAI TCCGGA 1 cut(s) 208
BseBI CCWGG 1 cut(s) 506
BseDI CCNNGG 1 cut(s) 980
BseGI GGATG 3 cut(s) 114, 501, 586
BseJI GATNNNNATC 2 cut(s) 1002, 1008
BseLI CCNNNNNNNGG 2 cut(s) 256, 395
BseMI GCAATG 1 cut(s) 939
BseMII CTCAG 3 cut(s) 81, 485, 707
BseNI ACTGG 1 cut(s) 628
BseRI GAGGAG 2 cut(s) 917, 920
BseSI GKGCMC 1 cut(s) 747
BseXI GCAGC 1 cut(s) 287
BseYI CCCAGC 1 cut(s) 444
Bsh1236I CGCG 4 cut(s) 180, 228, 243, 749
Bsh1285I CGRYCG 1 cut(s) 368
BshFI GGCC 4 cut(s) 5, 204, 300, 399
BshTI ACCGGT 1 cut(s) 363
BsiEI CGRYCG 1 cut(s) 368
BsiSI CCGG 3 cut(s) 209, 279, 364
BslFI GGGAC 1 cut(s) 449
BslI CCNNNNNNNGG 2 cut(s) 256, 395
BsmAI GTCTC 1 cut(s) 230
BsmFI GGGAC 1 cut(s) 449
BsnI GGCC 4 cut(s) 5, 204, 300, 399
Bsp119I TTCGAA 1 cut(s) 649
Bsp1286I GDGCHC 1 cut(s) 747
Bsp13I TCCGGA 1 cut(s) 208
Bsp143I GATC 4 cut(s) 141, 480, 1003, 1009
Bsp19I CCATGG 1 cut(s) 980
BspACI CCGC 7 cut(s) 150, 228, 260, 326, 347, 457, 749
BspANI GGCC 4 cut(s) 5, 204, 300, 399
BspCNI CTCAG 3 cut(s) 80, 484, 708
BspEI TCCGGA 1 cut(s) 208
BspFNI CGCG 4 cut(s) 180, 228, 243, 749
BspHI TCATGA 1 cut(s) 252
BspLI GGNNCC 2 cut(s) 464, 465
BspMI ACCTGC 1 cut(s) 40
BspPI GGATC 1 cut(s) 475
BspT104I TTCGAA 1 cut(s) 649
BsrBI CCGCTC 1 cut(s) 457
BsrDI GCAATG 1 cut(s) 939
BsrFI RCCGGY 2 cut(s) 278, 363
BsrI ACTGG 1 cut(s) 628
BssAI RCCGGY 2 cut(s) 278, 363
BssECI CCNNGG 1 cut(s) 980
BssMI GATC 4 cut(s) 141, 480, 1003, 1009
BssNAI GTATAC 1 cut(s) 977
BssNI GRCGYC 1 cut(s) 51
BssT1I CCWWGG 1 cut(s) 980
Bst1107I GTATAC 1 cut(s) 977
Bst2UI CCWGG 1 cut(s) 506
Bst4CI ACNGT 2 cut(s) 160, 843
BstACI GRCGYC 1 cut(s) 51
BstBAI YACGTR 2 cut(s) 88, 223
BstBI TTCGAA 1 cut(s) 649
BstC8I GCNNGC 3 cut(s) 280, 724, 747
BstDEI CTNAG 3 cut(s) 67, 471, 716
BstDSI CCRYGG 1 cut(s) 980
BstEII GGTNACC 1 cut(s) 13
BstF5I GGATG 3 cut(s) 114, 501, 586
BstFNI CGCG 4 cut(s) 180, 228, 243, 749
BstH2I RGCGCY 1 cut(s) 512
BstHHI GCGC 3 cut(s) 180, 228, 511
BstKTI GATC 4 cut(s) 144, 483, 1006, 1012
BstMAI GTCTC 1 cut(s) 230
BstMBI GATC 4 cut(s) 141, 480, 1003, 1009
BstMCI CGRYCG 1 cut(s) 368
BstMWI GCNNNNNNNGC 2 cut(s) 643, 728
BstNI CCWGG 1 cut(s) 506
BstPAI GACNNNNGTC 1 cut(s) 242
BstPI GGTNACC 1 cut(s) 13
BstSCI CCNGG 1 cut(s) 504
BstSFI CTRYAG 1 cut(s) 79
BstSLI GKGCMC 1 cut(s) 747
BstUI CGCG 4 cut(s) 180, 228, 243, 749
BstV1I GCAGC 1 cut(s) 287
BstZ17I GTATAC 1 cut(s) 977
BsuRI GGCC 4 cut(s) 5, 204, 300, 399
BtgI CCRYGG 1 cut(s) 980
BtrI CACGTC 1 cut(s) 797
BtsCI GGATG 3 cut(s) 114, 501, 586
BveI ACCTGC 1 cut(s) 40
Cac8I GCNNGC 3 cut(s) 280, 724, 747
CciI TCATGA 1 cut(s) 252
CfoI GCGC 3 cut(s) 180, 228, 511
Cfr10I RCCGGY 2 cut(s) 278, 363
Cfr13I GGNCC 3 cut(s) 4, 398, 463
CseI GACGC 1 cut(s) 232
Csp6I GTAC 5 cut(s) 156, 391, 760, 844, 857
CspAI ACCGGT 1 cut(s) 363
CviAII CATG 5 cut(s) 253, 435, 531, 945, 981
CviQI GTAC 5 cut(s) 156, 391, 760, 844, 857
DdeI CTNAG 3 cut(s) 67, 471, 716
DpnI GATC 4 cut(s) 143, 482, 1005, 1011
DpnII GATC 4 cut(s) 141, 480, 1003, 1009
DraI TTTAAA 1 cut(s) 868
DraIII CACNNNGTG 1 cut(s) 751
Eco130I CCWWGG 1 cut(s) 980
Eco147I AGGCCT 1 cut(s) 300
Eco47I GGWCC 1 cut(s) 463
Eco91I GGTNACC 1 cut(s) 13
EcoO109I RGGNCCY 1 cut(s) 463
EcoO65I GGTNACC 1 cut(s) 13
EcoRII CCWGG 1 cut(s) 504
EcoT14I CCWWGG 1 cut(s) 980
ErhI CCWWGG 1 cut(s) 980
FaeI CATG 5 cut(s) 256, 438, 534, 948, 984
FalI AAGNNNNNCTT 2 cut(s) 518, 550
FaqI GGGAC 1 cut(s) 449
FatI CATG 5 cut(s) 252, 434, 530, 944, 980
FauI CCCGC 3 cut(s) 221, 333, 354
FauNDI CATATG 1 cut(s) 413
FbaI TGATCA 1 cut(s) 141
FblI GTMKAC 4 cut(s) 162, 246, 476, 976
Fnu4HI GCNGC 2 cut(s) 151, 276
FokI GGATG 3 cut(s) 121, 488, 593
Fsp4HI GCNGC 2 cut(s) 151, 276
GlaI GCGC 3 cut(s) 179, 227, 510
GluI GCNGC 2 cut(s) 151, 276
GsaI CCCAGC 1 cut(s) 448
HaeII RGCGCY 1 cut(s) 512
HaeIII GGCC 4 cut(s) 5, 204, 300, 399
HapII CCGG 3 cut(s) 209, 279, 364
HgaI GACGC 1 cut(s) 232
HhaI GCGC 3 cut(s) 180, 228, 511
Hin1I GRCGYC 1 cut(s) 51
Hin1II CATG 5 cut(s) 256, 438, 534, 948, 984
Hin6I GCGC 3 cut(s) 178, 226, 509
HinP1I GCGC 3 cut(s) 178, 226, 509
HincII GTYRAC 3 cut(s) 247, 378, 477
HindII GTYRAC 3 cut(s) 247, 378, 477
HinfI GANTC 1 cut(s) 706
HpaII CCGG 3 cut(s) 209, 279, 364
HphI GGTGA 2 cut(s) 21, 274
Hpy166II GTNNAC 6 cut(s) 163, 247, 378, 477, 953, 977
Hpy188I TCNGA 4 cut(s) 61, 70, 339, 699
Hpy188III TCNNGA 4 cut(s) 209, 253, 1007, 1013
Hpy8I GTNNAC 6 cut(s) 163, 247, 378, 477, 953, 977
Hpy99I CGWCG 5 cut(s) 53, 56, 248, 481, 801
HpyAV CCTTC 4 cut(s) 46, 215, 290, 434
HpyCH4III ACNGT 2 cut(s) 160, 843
HpyCH4IV ACGT 5 cut(s) 51, 87, 222, 623, 796
HpyCH4V TGCA 3 cut(s) 97, 589, 737
HpyF10VI GCNNNNNNNGC 2 cut(s) 643, 728
HpyF3I CTNAG 3 cut(s) 67, 471, 716
HpySE526I ACGT 5 cut(s) 51, 87, 222, 623, 796
Hsp92I GRCGYC 1 cut(s) 51
Hsp92II CATG 5 cut(s) 256, 438, 534, 948, 984
HspAI GCGC 3 cut(s) 178, 226, 509
KflI GGGWCCC 1 cut(s) 463
Kpn2I TCCGGA 1 cut(s) 208
KroI GCCGGC 1 cut(s) 278
KroNI GCCGGC 1 cut(s) 280
Ksp22I TGATCA 1 cut(s) 141
Kzo9I GATC 4 cut(s) 141, 480, 1003, 1009
LmnI GCTCC 2 cut(s) 272, 454
Lsp1109I GCAGC 1 cut(s) 287
LweI GCATC 1 cut(s) 576
MaeII ACGT 5 cut(s) 51, 87, 222, 623, 796
MaeIII GTNAC 4 cut(s) 13, 27, 707, 800
MalI GATC 4 cut(s) 143, 482, 1005, 1011
MbiI CCGCTC 1 cut(s) 457
MboI GATC 4 cut(s) 141, 480, 1003, 1009
MboII GAAGA 3 cut(s) 137, 181, 301
MhlI GDGCHC 1 cut(s) 747
MluCI AATT 6 cut(s) 44, 189, 664, 912, 1043, 1048
MluI ACGCGT 1 cut(s) 241
MlyI GAGTC 1 cut(s) 715
MmeI TCCRAC 2 cut(s) 84, 250
MnlI CCTC 9 cut(s) 17, 249, 260, 311, 664, 772, 895, 898, 915
MroI TCCGGA 1 cut(s) 208
MroNI GCCGGC 1 cut(s) 278
MseI TTAA 5 cut(s) 132, 537, 867, 911, 1046
MslI CAYNNNNRTG 1 cut(s) 221
MspI CCGG 3 cut(s) 209, 279, 364
MspR9I CCNGG 1 cut(s) 506
MvaI CCWGG 1 cut(s) 506
MvnI CGCG 4 cut(s) 180, 228, 243, 749
MwoI GCNNNNNNNGC 2 cut(s) 643, 728
NaeI GCCGGC 1 cut(s) 280
NcoI CCATGG 1 cut(s) 980
NdeI CATATG 1 cut(s) 413
NdeII GATC 4 cut(s) 141, 480, 1003, 1009
NgoMIV GCCGGC 1 cut(s) 278
NlaIII CATG 5 cut(s) 256, 438, 534, 948, 984
NlaIV GGNNCC 2 cut(s) 464, 465
NmuCI GTSAC 3 cut(s) 27, 707, 800
NspV TTCGAA 1 cut(s) 649
PagI TCATGA 1 cut(s) 252
PaqCI CACCTGC 1 cut(s) 40
PceI AGGCCT 1 cut(s) 300
PcsI WCGNNNNNNNCGW 2 cut(s) 57, 675
PdiI GCCGGC 1 cut(s) 280
PinAI ACCGGT 1 cut(s) 363
PkrI GCNGC 2 cut(s) 152, 277
PleI GAGTC 1 cut(s) 714
PpsI GAGTC 1 cut(s) 714
Ppu21I YACGTR 2 cut(s) 88, 223
PpuMI RGGWCCY 1 cut(s) 463
PshAI GACNNNNGTC 1 cut(s) 242
Psp5II RGGWCCY 1 cut(s) 463
Psp6I CCWGG 1 cut(s) 504
PspEI GGTNACC 1 cut(s) 13
PspFI CCCAGC 1 cut(s) 444
PspGI CCWGG 1 cut(s) 504
PspN4I GGNNCC 2 cut(s) 464, 465
PspPI GGNCC 3 cut(s) 4, 398, 463
PspPPI RGGWCCY 1 cut(s) 463
RsaI GTAC 5 cut(s) 157, 392, 761, 845, 858
RsaNI GTAC 5 cut(s) 156, 391, 760, 844, 857
RseI CAYNNNNRTG 1 cut(s) 221
SalI GTCGAC 2 cut(s) 245, 475
SaqAI TTAA 5 cut(s) 132, 537, 867, 911, 1046
SatI GCNGC 2 cut(s) 151, 276
Sau3AI GATC 4 cut(s) 141, 480, 1003, 1009
Sau96I GGNCC 3 cut(s) 4, 398, 463
SchI GAGTC 1 cut(s) 715
ScrFI CCNGG 1 cut(s) 506
SduI GDGCHC 1 cut(s) 747
SfaNI GCATC 1 cut(s) 576
SfcI CTRYAG 1 cut(s) 79
SfuI TTCGAA 1 cut(s) 649
SinI GGWCC 1 cut(s) 463
SmiMI CAYNNNNRTG 1 cut(s) 221
SmlI CTYRAG 1 cut(s) 418
SmoI CTYRAG 1 cut(s) 418
Sse9I AATT 6 cut(s) 44, 189, 664, 912, 1043, 1048
SseBI AGGCCT 1 cut(s) 300
SsiI CCGC 7 cut(s) 150, 228, 260, 326, 347, 457, 749
StuI AGGCCT 1 cut(s) 300
StyD4I CCNGG 1 cut(s) 504
StyI CCWWGG 1 cut(s) 980
TaaI ACNGT 2 cut(s) 160, 843
TaiI ACGT 5 cut(s) 54, 90, 225, 626, 799
TaqI TCGA 8 cut(s) 48, 246, 312, 476, 649, 669, 684, 830
TasI AATT 6 cut(s) 44, 189, 664, 912, 1043, 1048
TatI WGTACW 1 cut(s) 155
TauI GCSGC 1 cut(s) 153
Tru1I TTAA 5 cut(s) 132, 537, 867, 911, 1046
Tru9I TTAA 5 cut(s) 132, 537, 867, 911, 1046
TseFI GTSAC 3 cut(s) 27, 707, 800
TseI GCWGC 1 cut(s) 275
Tsp45I GTSAC 3 cut(s) 27, 707, 800
TspDTI ATGAA 5 cut(s) 125, 555, 604, 618, 933
VpaK11BI GGWCC 1 cut(s) 463
XapI RAATTY 2 cut(s) 189, 664
XmiI GTMKAC 4 cut(s) 162, 246, 476, 976
ZraI GACGTC 1 cut(s) 52
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.