Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0000808

Physical Location & Seq

Genomic Coordinates Forward (+)

49313784 .. 49315953

Gene Structure 2170 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00367480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGAGAGAGATATCAGCCGGTGAAGGAAGAGCAGCTCGGGCGAATTCCAGCTCGAGCTGTGCAGCTTCTCGGCCTCCTAGCACCTTCCACGACCACCACTACTCCGACAGTAATTGTCGTTTCGTCGACAGTACGGTCTATAAGAAGATCACGCGCGAGTGGAGAATTTTGGAGAAGGATCTCCAGGAAACCATAAACGTGCGAACGTACGAGACACGTGTCGACCTCGTCAGGGCTGTGATTGTCGGAGCAGAAGGCACACCCTACGAGGACGGACTCTTCTTCTTCGACATCAAGTTCCCGGACAACTATCCGAACCAACCACCAGAGGTTCATTATCGCTCGCACGGATTGCAGGATGAGTCCCAAAAATACAATGGGGAAGCGTTTATTTCAACATGCAAGTCAACGTTGTATTTGCTCCAAAATCCACCCAAGAATTTTGAGGCTTTCACTGCCGACCATTTTCGTGGAAGAGCGAGTGGGATTCTGAGAGCGTGCAAGGCTTATGCGAAAGTCGGCTATTACAACAAGGAGACTGAGGCGCTTCTCAAGGTTTCCAGGAAGTTCAAGGAGTCGATGGAGCAGTTGTACCCACAACTGGTCGAGGCTTTTAAAATGAATGAGCCTTCTCCAAAGAACAATCCGGTCAAGAAATTGATGGCGGAGAGGAGTTCGACAAAGTTCGCAGATCAAGTGAAGAAGAAAGCTGAGCCGGCGGCCTTTACTGCATTTCGGTTATTGTCTGCAGGCTGGTTATTGTCTGCTGCATTTTTGGTCTATGTAGCTTTTGTAGTAGTACTTGGAAACTACGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0031625 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044424 GO:0044444 GO:0044464 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

272

Amino Acids

30.89

Weight (kDa)

9.09

Isoelectric Point (pI)

41.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	50 - 115	3.2e-12	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000808)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g01260 FvH4_4g19890 FvH4_4g19900 FvH4_4g19910 FvH4_4g23111
malus_domestica	MD16G1152700.v1.1
prunus_persica	Prupe.1G115900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0415111 RchiOBHm_Chr4g0421801 RchiOBHm_Chr4g0425521 RchiOBHm_Chr4g0425551
rosa_laevigata	RLG00000007355 RLG00000007357 RLG00000007358 RLG00000007360 RLG00000007361 RLG00000007364 RLG00000007366 RLG00000007640 RLG00000008097 RLG00000022500
rosa_multiflora	Rmu_co8278857.1_g000001 Rmu_sc0000635.1_g000001 Rmu_sc0000709.1_g000009 Rmu_sc0001900.1_g000008 Rmu_sc0001900.1_g000009 Rmu_sc0003748.1_g000014 Rmu_sc0008440.1_g000003 Rmu_sc0010306.1_g000005 Rmu_sc0012856.1_g000010 Rmu_sc0032188.1_g000001
rosa_roxburghii	Rroxscaffold_5G00364100 Rroxscaffold_5G00367460 Rroxscaffold_5G00367480 Rroxscaffold_5G00367490 Rroxscaffold_5G00367510 Rroxscaffold_5G00371110
rosa_rugosa	Rorug04G0176300 Rorug04G0203700 Rorug04G0203800 Rorug04G0203800 Rorug04G0203900 Rorug06G0289400
rosa_samantha	Rh4AG192100 Rh4AG235200 Rh4AG236000 Rh4AG260700 Rh4AG260900 Rh4BG190000 Rh4BG238700 Rh4BG266400 Rh4BG266600 Rh4BG266700 Rh4CG202900 Rh4CG250700 Rh4CG277700 Rh4CG277900 Rh4CG278000 Rh4DG235300 Rh4DG262700 Rh4DG262900 Rh4DG263100 Rh6BG409300 Rh6DG401700
rosa_wichuraiana	Rw4G016340 Rw4G019840 Rw4G022570 Rw4G022580 Rw4G022590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	134
AccI	GTMKAC	2 cut(s)	126, 222
AccII	CGCG	2 cut(s)	154, 156
AciI	CCGC	2 cut(s)	665, 719
AclI	AACGTT	1 cut(s)	410
AclWI	GGATC	1 cut(s)	186
AcsI	RAATTY	3 cut(s)	43, 165, 439
AcvI	CACGTG	1 cut(s)	218
AfaI	GTAC	4 cut(s)	133, 209, 593, 801
AfiI	CCNNNNNNNGG	2 cut(s)	232, 601
AflIII	ACRYGT	2 cut(s)	215, 217
AgsI	TTSAA	2 cut(s)	396, 571
AjnI	CCWGG	2 cut(s)	183, 560
AluBI	AGCT	6 cut(s)	35, 51, 57, 65, 710, 788
AluI	AGCT	6 cut(s)	35, 51, 57, 65, 710, 788
Alw26I	GTCTC	2 cut(s)	206, 530
AlwI	GGATC	1 cut(s)	186
Ama87I	CYCGRG	2 cut(s)	36, 52
AoxI	GGCC	2 cut(s)	71, 720
ApeKI	GCWGC	3 cut(s)	32, 62, 767
ApoI	RAATTY	3 cut(s)	43, 165, 439
AspLEI	GCGC	2 cut(s)	156, 547
AsuC2I	CCSGG	1 cut(s)	302
AsuHPI	GGTGA	1 cut(s)	32
AvaI	CYCGRG	2 cut(s)	36, 52
BbrPI	CACGTG	1 cut(s)	218
BbvI	GCAGC	3 cut(s)	44, 74, 754
BccI	CCATC	2 cut(s)	574, 655
BciT130I	CCWGG	2 cut(s)	185, 562
BcnI	CCSGG	1 cut(s)	302
BcoDI	GTCTC	2 cut(s)	206, 530
BfaI	CTAG	1 cut(s)	78
BfmI	CTRYAG	1 cut(s)	747
BfoI	RGCGCY	1 cut(s)	548
BisI	GCNGC	4 cut(s)	33, 63, 720, 768
BlpI	GCTNAGC	1 cut(s)	711
BlsI	GCNGC	4 cut(s)	34, 64, 721, 769
BmcAI	AGTACT	1 cut(s)	801
Bme1390I	CCNGG	3 cut(s)	185, 302, 562
BmeT110I	CYCGRG	2 cut(s)	36, 52
BmrFI	CCNGG	3 cut(s)	185, 302, 562
BoxI	GACNNNNGTC	1 cut(s)	218
BpmI	CTGGAG	1 cut(s)	167
Bpu1102I	GCTNAGC	1 cut(s)	711
BpuEI	CTTGAG	1 cut(s)	536
BpuMI	CCSGG	1 cut(s)	302
BsaAI	YACGTR	1 cut(s)	218
BsaWI	WCCGGW	1 cut(s)	646
BsaXI	ACNNNNNCTCC	4 cut(s)	86, 116, 575, 605
Bsc4I	CCNNNNNNNGG	2 cut(s)	232, 601
Bse118I	RCCGGY	2 cut(s)	17, 715
Bse1I	ACTGG	1 cut(s)	606
BseBI	CCWGG	2 cut(s)	185, 562
BseGI	GGATG	1 cut(s)	364
BseLI	CCNNNNNNNGG	2 cut(s)	232, 601
BseMII	CTCAG	3 cut(s)	482, 531, 702
BseNI	ACTGG	1 cut(s)	606
BseRI	GAGGAG	1 cut(s)	685
BseXI	GCAGC	3 cut(s)	44, 74, 754
BsgI	GTGCAG	1 cut(s)	81
Bsh1236I	CGCG	2 cut(s)	154, 156
BshFI	GGCC	2 cut(s)	73, 722
BsiHKCI	CYCGRG	2 cut(s)	36, 52
BsiSI	CCGG	4 cut(s)	18, 302, 647, 716
BsiWI	CGTACG	1 cut(s)	207
BslFI	GGGAC	1 cut(s)	349
BslI	CCNNNNNNNGG	2 cut(s)	232, 601
BsmAI	GTCTC	2 cut(s)	206, 530
BsmFI	GGGAC	1 cut(s)	349
BsnI	GGCC	2 cut(s)	73, 722
BsoBI	CYCGRG	2 cut(s)	36, 52
Bsp143I	GATC	3 cut(s)	147, 178, 691
Bsp1720I	GCTNAGC	1 cut(s)	711
BspACI	CCGC	2 cut(s)	665, 719
BspANI	GGCC	2 cut(s)	73, 722
BspCNI	CTCAG	3 cut(s)	483, 532, 703
BspFNI	CGCG	2 cut(s)	154, 156
BspMAI	CTGCAG	1 cut(s)	751
BspPI	GGATC	1 cut(s)	186
BspQI	GCTCTTC	2 cut(s)	22, 469
BsrFI	RCCGGY	2 cut(s)	17, 715
BsrI	ACTGG	1 cut(s)	606
BssAI	RCCGGY	2 cut(s)	17, 715
BssMI	GATC	3 cut(s)	147, 178, 691
Bst2UI	CCWGG	2 cut(s)	185, 562
Bst4CI	ACNGT	3 cut(s)	110, 131, 136
Bst6I	CTCTTC	3 cut(s)	22, 284, 469
BstAPI	GCANNNNNTGC	1 cut(s)	352
BstBAI	YACGTR	1 cut(s)	218
BstC8I	GCNNGC	4 cut(s)	344, 499, 717, 751
BstDEI	CTNAG	3 cut(s)	491, 540, 711
BstF5I	GGATG	1 cut(s)	364
BstFNI	CGCG	2 cut(s)	154, 156
BstH2I	RGCGCY	1 cut(s)	548
BstHHI	GCGC	2 cut(s)	156, 547
BstKTI	GATC	3 cut(s)	150, 181, 694
BstMAI	GTCTC	2 cut(s)	206, 530
BstMBI	GATC	3 cut(s)	147, 178, 691
BstMWI	GCNNNNNNNGC	6 cut(s)	38, 352, 455, 503, 716, 728
BstNI	CCWGG	2 cut(s)	185, 562
BstNSI	RCATGY	1 cut(s)	402
BstPAI	GACNNNNGTC	1 cut(s)	218
BstSCI	CCNGG	3 cut(s)	183, 300, 560
BstSFI	CTRYAG	1 cut(s)	747
BstUI	CGCG	2 cut(s)	154, 156
BstV1I	GCAGC	3 cut(s)	44, 74, 754
BstX2I	RGATCY	1 cut(s)	178
BstXI	CCANNNNNNTGG	1 cut(s)	470
BstYI	RGATCY	1 cut(s)	178
BsuRI	GGCC	2 cut(s)	73, 722
BtsCI	GGATG	1 cut(s)	364
BtsI	GCAGTG	1 cut(s)	453
BtsIMutI	CAGTG	1 cut(s)	453
Cac8I	GCNNGC	4 cut(s)	344, 499, 717, 751
CfoI	GCGC	2 cut(s)	156, 547
Cfr10I	RCCGGY	2 cut(s)	17, 715
Csp6I	GTAC	4 cut(s)	132, 208, 592, 800
CviAII	CATG	1 cut(s)	399
CviQI	GTAC	4 cut(s)	132, 208, 592, 800
DdeI	CTNAG	3 cut(s)	491, 540, 711
DpnI	GATC	3 cut(s)	149, 180, 693
DpnII	GATC	3 cut(s)	147, 178, 691
DraI	TTTAAA	1 cut(s)	616
DrdI	GACNNNNNNGTC	1 cut(s)	134
DseDI	GACNNNNNNGTC	1 cut(s)	134
Eam1104I	CTCTTC	3 cut(s)	22, 284, 469
EarI	CTCTTC	3 cut(s)	22, 284, 469
EciI	GGCGGA	1 cut(s)	680
Eco32I	GATATC	1 cut(s)	12
Eco72I	CACGTG	1 cut(s)	218
Eco88I	CYCGRG	2 cut(s)	36, 52
EcoRI	GAATTC	1 cut(s)	43
EcoRII	CCWGG	2 cut(s)	183, 560
EcoRV	GATATC	1 cut(s)	12
FaeI	CATG	1 cut(s)	402
FaiI	YATR	5 cut(s)	141, 194, 400, 510, 783
FaqI	GGGAC	1 cut(s)	349
FatI	CATG	1 cut(s)	398
FblI	GTMKAC	2 cut(s)	126, 222
Fnu4HI	GCNGC	4 cut(s)	33, 63, 720, 768
FokI	GGATG	1 cut(s)	371
Fsp4HI	GCNGC	4 cut(s)	33, 63, 720, 768
FspBI	CTAG	1 cut(s)	78
GlaI	GCGC	2 cut(s)	155, 546
GluI	GCNGC	4 cut(s)	33, 63, 720, 768
GsuI	CTGGAG	1 cut(s)	167
HaeII	RGCGCY	1 cut(s)	548
HaeIII	GGCC	2 cut(s)	73, 722
HapII	CCGG	4 cut(s)	18, 302, 647, 716
HhaI	GCGC	2 cut(s)	156, 547
Hin1II	CATG	1 cut(s)	402
Hin6I	GCGC	2 cut(s)	154, 545
HinP1I	GCGC	2 cut(s)	154, 545
HincII	GTYRAC	3 cut(s)	127, 223, 408
HindII	GTYRAC	3 cut(s)	127, 223, 408
HinfI	GANTC	4 cut(s)	276, 362, 487, 575
HpaII	CCGG	4 cut(s)	18, 302, 647, 716
HphI	GGTGA	1 cut(s)	32
Hpy166II	GTNNAC	3 cut(s)	127, 223, 408
Hpy188I	TCNGA	4 cut(s)	106, 248, 315, 492
Hpy188III	TCNNGA	1 cut(s)	652
Hpy8I	GTNNAC	3 cut(s)	127, 223, 408
Hpy99I	CGWCG	1 cut(s)	128
HpyAV	CCTTC	5 cut(s)	17, 94, 169, 248, 639
HpyCH4III	ACNGT	3 cut(s)	110, 131, 136
HpyCH4IV	ACGT	5 cut(s)	198, 206, 217, 410, 813
HpyCH4V	TGCA	7 cut(s)	62, 355, 402, 501, 731, 749, 770
HpyF10VI	GCNNNNNNNGC	6 cut(s)	38, 352, 455, 503, 716, 728
HpyF3I	CTNAG	3 cut(s)	491, 540, 711
HpySE526I	ACGT	5 cut(s)	198, 206, 217, 410, 813
Hsp92II	CATG	1 cut(s)	402
HspAI	GCGC	2 cut(s)	154, 545
KroI	GCCGGC	1 cut(s)	715
KroNI	GCCGGC	1 cut(s)	717
Kzo9I	GATC	3 cut(s)	147, 178, 691
LguI	GCTCTTC	2 cut(s)	22, 469
LmnI	GCTCC	3 cut(s)	248, 426, 583
Lsp1109I	GCAGC	3 cut(s)	44, 74, 754
MaeI	CTAG	1 cut(s)	78
MaeII	ACGT	5 cut(s)	198, 206, 217, 410, 813
MalI	GATC	3 cut(s)	149, 180, 693
MboI	GATC	3 cut(s)	147, 178, 691
MboII	GAAGA	8 cut(s)	39, 157, 271, 274, 277, 486, 712, 715
MflI	RGATCY	1 cut(s)	178
MluCI	AATT	5 cut(s)	43, 112, 165, 439, 656
MlyI	GAGTC	3 cut(s)	270, 371, 584
MmeI	TCCRAC	2 cut(s)	129, 226
MnlI	CCTC	8 cut(s)	84, 236, 262, 322, 439, 535, 601, 663
MroNI	GCCGGC	1 cut(s)	715
MseI	TTAA	1 cut(s)	615
MslI	CAYNNNNRTG	2 cut(s)	197, 468
MspI	CCGG	4 cut(s)	18, 302, 647, 716
MspR9I	CCNGG	3 cut(s)	185, 302, 562
MvaI	CCWGG	2 cut(s)	185, 562
MvnI	CGCG	2 cut(s)	154, 156
MwoI	GCNNNNNNNGC	6 cut(s)	38, 352, 455, 503, 716, 728
NaeI	GCCGGC	1 cut(s)	717
NciI	CCSGG	1 cut(s)	302
NdeII	GATC	3 cut(s)	147, 178, 691
NgoMIV	GCCGGC	1 cut(s)	715
NlaIII	CATG	1 cut(s)	402
NmeAIII	GCCGAG	1 cut(s)	49
NspI	RCATGY	1 cut(s)	402
PaeR7I	CTCGAG	1 cut(s)	52
PciSI	GCTCTTC	2 cut(s)	22, 469
PdiI	GCCGGC	1 cut(s)	717
PfeI	GAWTC	1 cut(s)	487
Pfl23II	CGTACG	1 cut(s)	207
PflFI	GACNNNGTC	1 cut(s)	227
PfoI	TCCNGGA	3 cut(s)	183, 300, 560
PkrI	GCNGC	4 cut(s)	34, 64, 721, 769
PleI	GAGTC	3 cut(s)	270, 370, 583
PmaCI	CACGTG	1 cut(s)	218
PmlI	CACGTG	1 cut(s)	218
PpsI	GAGTC	3 cut(s)	270, 370, 583
Ppu21I	YACGTR	1 cut(s)	218
PshAI	GACNNNNGTC	1 cut(s)	218
Psp1406I	AACGTT	1 cut(s)	410
Psp6I	CCWGG	2 cut(s)	183, 560
PspCI	CACGTG	1 cut(s)	218
PspGI	CCWGG	2 cut(s)	183, 560
PspLI	CGTACG	1 cut(s)	207
PspXI	VCTCGAGB	1 cut(s)	52
PstI	CTGCAG	1 cut(s)	751
PsuI	RGATCY	1 cut(s)	178
PsyI	GACNNNGTC	1 cut(s)	227
RsaI	GTAC	4 cut(s)	133, 209, 593, 801
RsaNI	GTAC	4 cut(s)	132, 208, 592, 800
RseI	CAYNNNNRTG	2 cut(s)	197, 468
SalI	GTCGAC	2 cut(s)	125, 221
SapI	GCTCTTC	2 cut(s)	22, 469
SaqAI	TTAA	1 cut(s)	615
SatI	GCNGC	4 cut(s)	33, 63, 720, 768
Sau3AI	GATC	3 cut(s)	147, 178, 691
ScaI	AGTACT	1 cut(s)	801
SchI	GAGTC	3 cut(s)	270, 371, 584
ScrFI	CCNGG	3 cut(s)	185, 302, 562
SfcI	CTRYAG	1 cut(s)	747
Sfr274I	CTCGAG	1 cut(s)	52
SlaI	CTCGAG	1 cut(s)	52
SmiMI	CAYNNNNRTG	2 cut(s)	197, 468
SmlI	CTYRAG	2 cut(s)	52, 551
SmoI	CTYRAG	2 cut(s)	52, 551
Sse9I	AATT	5 cut(s)	43, 112, 165, 439, 656
SsiI	CCGC	2 cut(s)	665, 719
SspMI	CTAG	1 cut(s)	78
StyD4I	CCNGG	3 cut(s)	183, 300, 560
TaaI	ACNGT	3 cut(s)	110, 131, 136
TaiI	ACGT	5 cut(s)	201, 209, 220, 413, 816
TaqI	TCGA	7 cut(s)	53, 126, 222, 288, 578, 606, 677
TasI	AATT	5 cut(s)	43, 112, 165, 439, 656
TatI	WGTACW	1 cut(s)	799
TauI	GCSGC	1 cut(s)	722
TfiI	GAWTC	1 cut(s)	487
Tru1I	TTAA	1 cut(s)	615
Tru9I	TTAA	1 cut(s)	615
TscAI	CASTG	1 cut(s)	460
TseI	GCWGC	3 cut(s)	32, 62, 767
TspDTI	ATGAA	2 cut(s)	323, 635
TspGWI	ACGGA	2 cut(s)	288, 363
TspRI	CASTG	1 cut(s)	460
Tth111I	GACNNNGTC	1 cut(s)	227
XapI	RAATTY	3 cut(s)	43, 165, 439
XceI	RCATGY	1 cut(s)	402
XcmI	CCANNNNNNNNNTGG	1 cut(s)	374
XhoI	CTCGAG	1 cut(s)	52
XmiI	GTMKAC	2 cut(s)	126, 222
XspI	CTAG	1 cut(s)	78
ZrmI	AGTACT	1 cut(s)	801

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.