Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0000808

Physical Location & Seq

Genomic Coordinates Reverse (-)

32971820 .. 32974372

Gene Structure 2553 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG190000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGACCGAACCAGCCTTCAAGCAATTCGACATCGTTTCCGATCACTCAGACCACAACTACAGTAACGAGGAAAAGCAAGGGCAGGGGAAGAAGAACAACAAAAGCGGAGATGGAGATTGTTTCACCAACAGTGGCAGTACTGTCTACAAGAAGATCATGCGTGAGTGGAAAATTTTGGAGAATGGTCTCCCGGACACCATCTATGTGCGCGTGTACGAGAAGCGCGTCGACCTGATGAGGGCGGTGATTGTCGGAGCAGCCGGCACACCTTACCACGATGGCCTCTATTTCTTTGACATTAAGTTTCCGACTAACTATCCGAACCGCCCGCCCCAAGTCCATTACCTGTCGCACGGGTTAAGTACGAACGAGCACCTATGGGTGTCCGGACATTTCTGCTTGAGCCTTCTCAACACCTGGATTGGTTGGGGGAAGGAGCGGTGGGTTCCATCTCAGTCGACGATTCTCCAAGTTCTTGTGTCAATCCAGGCGCTCGTTCTCAATGCCAAGGCCAAGTACCTCTCTTACAACGAGGTTGCTTTTATAAACAAATGCATATCGACGGTGTATTTGCTCCGAAATCCTCCAAAGAATTTTGAGGGATTCATTGCTGGACATTTTCGTAGTAAAGCACCTGACATATTGAGAGCCTACATCGCTTATGCAAATGGGCGCGTGCTTGTAGGGCACTACAACAATGAGACTGAGGTGGCGTGCCTTACTGCGGAAAATAATTCACGTTACTATGTTTCCGAGATGTTCAAGGACCGGATGGAGGAGCTGTACCCAGTACTCGTCCAGGCTTTTAAAAAGAATGGGTTTTCTGCAGAAGATTGGGTGGAGGAGGACTTGATTGTGGAGAGGAAACCCCAGAAGCCCTTCTCATGGCACGCGCATAAAATCAAGCAAGATCATTCAATTGAAATCATTCTCTTCATCTCTATCAGATTTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0031625 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044424 GO:0044444 GO:0044464 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

318

Amino Acids

36.71

Weight (kDa)

8.19

Isoelectric Point (pI)

37.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	52 - 172	3.3e-19	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000808)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g01260 FvH4_4g19890 FvH4_4g19900 FvH4_4g19910 FvH4_4g23111
malus_domestica	MD16G1152700.v1.1
prunus_persica	Prupe.1G115900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0415111 RchiOBHm_Chr4g0421801 RchiOBHm_Chr4g0425521 RchiOBHm_Chr4g0425551
rosa_laevigata	RLG00000007355 RLG00000007357 RLG00000007358 RLG00000007360 RLG00000007361 RLG00000007364 RLG00000007366 RLG00000007640 RLG00000008097 RLG00000022500
rosa_multiflora	Rmu_co8278857.1_g000001 Rmu_sc0000635.1_g000001 Rmu_sc0000709.1_g000009 Rmu_sc0001900.1_g000008 Rmu_sc0001900.1_g000009 Rmu_sc0003748.1_g000014 Rmu_sc0008440.1_g000003 Rmu_sc0010306.1_g000005 Rmu_sc0012856.1_g000010 Rmu_sc0032188.1_g000001
rosa_roxburghii	Rroxscaffold_5G00364100 Rroxscaffold_5G00367460 Rroxscaffold_5G00367480 Rroxscaffold_5G00367490 Rroxscaffold_5G00367510 Rroxscaffold_5G00371110
rosa_rugosa	Rorug04G0176300 Rorug04G0203700 Rorug04G0203800 Rorug04G0203800 Rorug04G0203900 Rorug06G0289400
rosa_samantha	Rh4AG192100 Rh4AG235200 Rh4AG236000 Rh4AG260700 Rh4AG260900 Rh4BG190000 Rh4BG238700 Rh4BG266400 Rh4BG266600 Rh4BG266700 Rh4CG202900 Rh4CG250700 Rh4CG277700 Rh4CG277900 Rh4CG278000 Rh4DG235300 Rh4DG262700 Rh4DG262900 Rh4DG263100 Rh6BG409300 Rh6DG401700
rosa_wichuraiana	Rw4G016340 Rw4G019840 Rw4G022570 Rw4G022580 Rw4G022590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	545
AccBSI	CCGCTC	1 cut(s)	439
AccI	GTMKAC	3 cut(s)	144, 228, 458
AccII	CGCG	4 cut(s)	210, 225, 675, 893
AccIII	TCCGGA	1 cut(s)	386
AciI	CCGC	6 cut(s)	105, 242, 325, 329, 439, 725
AcsI	RAATTY	2 cut(s)	171, 592
AfaI	GTAC	6 cut(s)	139, 215, 364, 518, 785, 792
AfiI	CCNNNNNNNGG	4 cut(s)	238, 724, 775, 885
AgsI	TTSAA	4 cut(s)	19, 763, 918, 923
AjnI	CCWGG	3 cut(s)	416, 486, 798
AluBI	AGCT	1 cut(s)	781
AluI	AGCT	1 cut(s)	781
Alw21I	GWGCWC	1 cut(s)	375
Alw26I	GTCTC	2 cut(s)	191, 695
Aor13HI	TCCGGA	1 cut(s)	386
AoxI	GGCC	2 cut(s)	280, 510
ApeKI	GCWGC	1 cut(s)	257
ApoI	RAATTY	2 cut(s)	171, 592
ArsI	GACNNNNNNTTYG	2 cut(s)	553, 585
Asp700I	GAANNNNTTC	2 cut(s)	878, 927
AspLEI	GCGC	5 cut(s)	210, 225, 493, 675, 895
AspS9I	GGNCC	1 cut(s)	766
AsuC2I	CCSGG	1 cut(s)	191
AsuHPI	GGTGA	2 cut(s)	115, 256
AvaII	GGWCC	1 cut(s)	766
BaeGI	GKGCMC	1 cut(s)	690
Bbv12I	GWGCWC	1 cut(s)	375
BbvI	GCAGC	1 cut(s)	269
BccI	CCATC	5 cut(s)	104, 206, 272, 457, 766
BciT130I	CCWGG	3 cut(s)	418, 488, 800
BcnI	CCSGG	1 cut(s)	191
BcoDI	GTCTC	2 cut(s)	191, 695
BfmI	CTRYAG	2 cut(s)	58, 825
BfoI	RGCGCY	1 cut(s)	494
BisI	GCNGC	1 cut(s)	258
BlsI	GCNGC	1 cut(s)	259
BmcAI	AGTACT	2 cut(s)	139, 792
Bme1390I	CCNGG	4 cut(s)	191, 418, 488, 800
Bme18I	GGWCC	1 cut(s)	766
BmgT120I	GGNCC	1 cut(s)	766
BmiI	GGNNCC	1 cut(s)	447
BmrFI	CCNGG	4 cut(s)	191, 418, 488, 800
BmrI	ACTGGG	1 cut(s)	782
BmuI	ACTGGG	1 cut(s)	782
BpuEI	CTTGAG	1 cut(s)	421
BpuMI	CCSGG	1 cut(s)	191
BsaI	GGTCTC	1 cut(s)	191
BsaJI	CCNNGG	1 cut(s)	507
BsaWI	WCCGGW	2 cut(s)	386, 768
BsaXI	ACNNNNNCTCC	2 cut(s)	767, 797
Bsc4I	CCNNNNNNNGG	4 cut(s)	238, 724, 775, 885
Bse118I	RCCGGY	1 cut(s)	260
Bse1I	ACTGG	1 cut(s)	788
Bse3DI	GCAATG	1 cut(s)	606
BseAI	TCCGGA	1 cut(s)	386
BseBI	CCWGG	3 cut(s)	418, 488, 800
BseDI	CCNNGG	1 cut(s)	507
BseGI	GGATG	1 cut(s)	777
BseLI	CCNNNNNNNGG	4 cut(s)	238, 724, 775, 885
BseMI	GCAATG	1 cut(s)	606
BseMII	CTCAG	3 cut(s)	60, 467, 696
BseNI	ACTGG	1 cut(s)	788
BseRI	GAGGAG	2 cut(s)	791, 857
BseSI	GKGCMC	1 cut(s)	690
BseXI	GCAGC	1 cut(s)	269
Bsh1236I	CGCG	4 cut(s)	210, 225, 675, 893
BshFI	GGCC	2 cut(s)	282, 512
BsiHKAI	GWGCWC	1 cut(s)	375
BsiSI	CCGG	4 cut(s)	191, 261, 387, 769
BslI	CCNNNNNNNGG	4 cut(s)	238, 724, 775, 885
BsmAI	GTCTC	2 cut(s)	191, 695
BsnI	GGCC	2 cut(s)	282, 512
Bso31I	GGTCTC	1 cut(s)	191
Bsp1286I	GDGCHC	2 cut(s)	375, 690
Bsp13I	TCCGGA	1 cut(s)	386
Bsp143I	GATC	3 cut(s)	40, 153, 910
BspACI	CCGC	6 cut(s)	105, 242, 325, 329, 439, 725
BspANI	GGCC	2 cut(s)	282, 512
BspCNI	CTCAG	3 cut(s)	59, 466, 697
BspEI	TCCGGA	1 cut(s)	386
BspFNI	CGCG	4 cut(s)	210, 225, 675, 893
BspLI	GGNNCC	1 cut(s)	447
BspMAI	CTGCAG	1 cut(s)	829
BspTNI	GGTCTC	1 cut(s)	191
BsrBI	CCGCTC	1 cut(s)	439
BsrDI	GCAATG	1 cut(s)	606
BsrFI	RCCGGY	1 cut(s)	260
BsrI	ACTGG	1 cut(s)	788
BssAI	RCCGGY	1 cut(s)	260
BssECI	CCNNGG	1 cut(s)	507
BssMI	GATC	3 cut(s)	40, 153, 910
BssT1I	CCWWGG	1 cut(s)	507
Bst2UI	CCWGG	3 cut(s)	418, 488, 800
Bst4CI	ACNGT	4 cut(s)	62, 131, 142, 565
Bst6I	CTCTTC	1 cut(s)	938
BstC8I	GCNNGC	5 cut(s)	262, 329, 677, 715, 891
BstDEI	CTNAG	3 cut(s)	46, 453, 705
BstF5I	GGATG	1 cut(s)	777
BstFNI	CGCG	4 cut(s)	210, 225, 675, 893
BstH2I	RGCGCY	1 cut(s)	494
BstHHI	GCGC	5 cut(s)	210, 225, 493, 675, 895
BstKTI	GATC	3 cut(s)	43, 156, 913
BstMAI	GTCTC	2 cut(s)	191, 695
BstMBI	GATC	3 cut(s)	40, 153, 910
BstMWI	GCNNNNNNNGC	2 cut(s)	656, 685
BstNI	CCWGG	3 cut(s)	418, 488, 800
BstSCI	CCNGG	4 cut(s)	189, 416, 486, 798
BstSFI	CTRYAG	2 cut(s)	58, 825
BstSLI	GKGCMC	1 cut(s)	690
BstUI	CGCG	4 cut(s)	210, 225, 675, 893
BstV1I	GCAGC	1 cut(s)	269
BsuRI	GGCC	2 cut(s)	282, 512
BtgZI	GCGATG	1 cut(s)	640
BtsCI	GGATG	1 cut(s)	777
BtsIMutI	CAGTG	1 cut(s)	136
Cac8I	GCNNGC	5 cut(s)	262, 329, 677, 715, 891
CfoI	GCGC	5 cut(s)	210, 225, 493, 675, 895
Cfr10I	RCCGGY	1 cut(s)	260
Cfr13I	GGNCC	1 cut(s)	766
CseI	GACGC	1 cut(s)	214
Csp6I	GTAC	6 cut(s)	138, 214, 363, 517, 784, 791
CviAII	CATG	2 cut(s)	157, 885
CviJI	RGCY	9 cut(s)	14, 260, 282, 405, 512, 650, 781, 803, 877
CviKI_1	RGCY	9 cut(s)	14, 260, 282, 405, 512, 650, 781, 803, 877
CviQI	GTAC	6 cut(s)	138, 214, 363, 517, 784, 791
DdeI	CTNAG	3 cut(s)	46, 453, 705
DpnI	GATC	3 cut(s)	42, 155, 912
DpnII	GATC	3 cut(s)	40, 153, 910
DraI	TTTAAA	1 cut(s)	808
Eam1104I	CTCTTC	1 cut(s)	938
EarI	CTCTTC	1 cut(s)	938
Eco130I	CCWWGG	1 cut(s)	507
Eco31I	GGTCTC	1 cut(s)	191
Eco47I	GGWCC	1 cut(s)	766
EcoRII	CCWGG	3 cut(s)	416, 486, 798
EcoT14I	CCWWGG	1 cut(s)	507
EcoT22I	ATGCAT	1 cut(s)	557
ErhI	CCWWGG	1 cut(s)	507
FaeI	CATG	2 cut(s)	160, 888
FatI	CATG	2 cut(s)	156, 884
FauI	CCCGC	1 cut(s)	336
FblI	GTMKAC	3 cut(s)	144, 228, 458
Fnu4HI	GCNGC	1 cut(s)	258
FokI	GGATG	1 cut(s)	784
Fsp4HI	GCNGC	1 cut(s)	258
GlaI	GCGC	5 cut(s)	209, 224, 492, 674, 894
GluI	GCNGC	1 cut(s)	258
HaeII	RGCGCY	1 cut(s)	494
HaeIII	GGCC	2 cut(s)	282, 512
HapII	CCGG	4 cut(s)	191, 261, 387, 769
HgaI	GACGC	1 cut(s)	214
HhaI	GCGC	5 cut(s)	210, 225, 493, 675, 895
Hin1II	CATG	2 cut(s)	160, 888
Hin6I	GCGC	5 cut(s)	208, 223, 491, 673, 893
HinP1I	GCGC	5 cut(s)	208, 223, 491, 673, 893
HincII	GTYRAC	2 cut(s)	229, 459
HindII	GTYRAC	2 cut(s)	229, 459
HinfI	GANTC	2 cut(s)	463, 603
HpaII	CCGG	4 cut(s)	191, 261, 387, 769
HphI	GGTGA	2 cut(s)	115, 256
Hpy166II	GTNNAC	4 cut(s)	145, 214, 229, 459
Hpy188I	TCNGA	8 cut(s)	40, 49, 254, 309, 321, 578, 754, 947
Hpy188III	TCNNGA	1 cut(s)	387
Hpy8I	GTNNAC	4 cut(s)	145, 214, 229, 459
Hpy99I	CGWCG	3 cut(s)	230, 463, 565
HpyAV	CCTTC	4 cut(s)	25, 416, 427, 889
HpyCH4III	ACNGT	4 cut(s)	62, 131, 142, 565
HpyCH4IV	ACGT	1 cut(s)	739
HpyCH4V	TGCA	3 cut(s)	555, 665, 827
HpyF10VI	GCNNNNNNNGC	2 cut(s)	656, 685
HpyF3I	CTNAG	3 cut(s)	46, 453, 705
HpySE526I	ACGT	1 cut(s)	739
Hsp92II	CATG	2 cut(s)	160, 888
HspAI	GCGC	5 cut(s)	208, 223, 491, 673, 893
Kpn2I	TCCGGA	1 cut(s)	386
KroI	GCCGGC	1 cut(s)	260
KroNI	GCCGGC	1 cut(s)	262
Kzo9I	GATC	3 cut(s)	40, 153, 910
LmnI	GCTCC	4 cut(s)	254, 436, 579, 778
Lsp1109I	GCAGC	1 cut(s)	269
MaeII	ACGT	1 cut(s)	739
MaeIII	GTNAC	2 cut(s)	62, 740
MalI	GATC	3 cut(s)	42, 155, 912
MbiI	CCGCTC	1 cut(s)	439
MboI	GATC	3 cut(s)	40, 153, 910
MboII	GAAGA	5 cut(s)	100, 103, 163, 842, 925
MfeI	CAATTG	1 cut(s)	918
MhlI	GDGCHC	2 cut(s)	375, 690
MluCI	AATT	5 cut(s)	23, 171, 592, 733, 918
MmeI	TCCRAC	2 cut(s)	232, 332
Mph1103I	ATGCAT	1 cut(s)	557
MroI	TCCGGA	1 cut(s)	386
MroNI	GCCGGC	1 cut(s)	260
MroXI	GAANNNNTTC	2 cut(s)	878, 927
MseI	TTAA	3 cut(s)	300, 359, 807
MslI	CAYNNNNRTG	1 cut(s)	203
MspI	CCGG	4 cut(s)	191, 261, 387, 769
MspR9I	CCNGG	4 cut(s)	191, 418, 488, 800
MunI	CAATTG	1 cut(s)	918
MvaI	CCWGG	3 cut(s)	418, 488, 800
MvnI	CGCG	4 cut(s)	210, 225, 675, 893
MwoI	GCNNNNNNNGC	2 cut(s)	656, 685
NaeI	GCCGGC	1 cut(s)	262
NciI	CCSGG	1 cut(s)	191
NdeII	GATC	3 cut(s)	40, 153, 910
NgoMIV	GCCGGC	1 cut(s)	260
NlaIII	CATG	2 cut(s)	160, 888
NlaIV	GGNNCC	1 cut(s)	447
NsiI	ATGCAT	1 cut(s)	557
PcsI	WCGNNNNNNNCGW	1 cut(s)	222
PdiI	GCCGGC	1 cut(s)	262
PdmI	GAANNNNTTC	2 cut(s)	878, 927
PfeI	GAWTC	2 cut(s)	463, 603
PfoI	TCCNGGA	1 cut(s)	189
PkrI	GCNGC	1 cut(s)	259
PsiI	TTATAA	1 cut(s)	545
Psp6I	CCWGG	3 cut(s)	416, 486, 798
PspGI	CCWGG	3 cut(s)	416, 486, 798
PspN4I	GGNNCC	1 cut(s)	447
PspPI	GGNCC	1 cut(s)	766
PstI	CTGCAG	1 cut(s)	829
RsaI	GTAC	6 cut(s)	139, 215, 364, 518, 785, 792
RsaNI	GTAC	6 cut(s)	138, 214, 363, 517, 784, 791
RseI	CAYNNNNRTG	1 cut(s)	203
SalI	GTCGAC	2 cut(s)	227, 457
SaqAI	TTAA	3 cut(s)	300, 359, 807
SatI	GCNGC	1 cut(s)	258
Sau3AI	GATC	3 cut(s)	40, 153, 910
Sau96I	GGNCC	1 cut(s)	766
ScaI	AGTACT	2 cut(s)	139, 792
ScrFI	CCNGG	4 cut(s)	191, 418, 488, 800
SduI	GDGCHC	2 cut(s)	375, 690
SfcI	CTRYAG	2 cut(s)	58, 825
SinI	GGWCC	1 cut(s)	766
SmiMI	CAYNNNNRTG	1 cut(s)	203
SmlI	CTYRAG	1 cut(s)	400
SmoI	CTYRAG	1 cut(s)	400
Sse9I	AATT	5 cut(s)	23, 171, 592, 733, 918
SsiI	CCGC	6 cut(s)	105, 242, 325, 329, 439, 725
StyD4I	CCNGG	4 cut(s)	189, 416, 486, 798
StyI	CCWWGG	1 cut(s)	507
TaaI	ACNGT	4 cut(s)	62, 131, 142, 565
TaiI	ACGT	1 cut(s)	742
TaqI	TCGA	4 cut(s)	27, 228, 458, 560
TaqII	GACCGA	1 cut(s)	20
TasI	AATT	5 cut(s)	23, 171, 592, 733, 918
TatI	WGTACW	2 cut(s)	137, 790
TfiI	GAWTC	2 cut(s)	463, 603
Tru1I	TTAA	3 cut(s)	300, 359, 807
Tru9I	TTAA	3 cut(s)	300, 359, 807
TscAI	CASTG	1 cut(s)	136
TseI	GCWGC	1 cut(s)	257
TspDTI	ATGAA	2 cut(s)	595, 925
TspRI	CASTG	1 cut(s)	136
VpaK11BI	GGWCC	1 cut(s)	766
XapI	RAATTY	2 cut(s)	171, 592
XmiI	GTMKAC	3 cut(s)	144, 228, 458
XmnI	GAANNNNTTC	2 cut(s)	878, 927
ZrmI	AGTACT	2 cut(s)	139, 792
Zsp2I	ATGCAT	1 cut(s)	557

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.