Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0000808

Physical Location & Seq

Genomic Coordinates Reverse (-)

16135512 .. 16136357

Gene Structure 846 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000007361

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGGCCGTCTCCGTCAACACCAAACCGTCGTTCAAGCAGTTTGACATCGTTATGGACCACTCAGACCACCACTACTCCGACAGTAATTGTCGTTTCGTCGACAGTATGGTCTATAAGAAGATCACGCGGGAGTGGACAATTTTGGAGAAGGATCTCCCGGAAACCATATACGTGCGCACGTACGAGACACGTGTCGACCTCTTCAGGGCTGTGATTGTCAGAGCAGAAGGCACACCCTACGAGGGCGGACTCTTCTTCTTCGACATCAAGTTCCCGGACAACTATCCGAACCAACCACAGGAGGTTAACCCTAATCTGTATGCGTCTAGACATGTTTGCTTGAGCCTACTCGACACGTGGTTTGGCCCGGGCTGGGAATCATCCCAATCCACCATCCTCCAAGTGTTGGTGTCGATCCAGGCTCTTGTTCTCAACGGCGAGCCCTTCTTTAGCGAAGATGGGTCCCAAAAATACAATGGGGAAGCGTTCATTTCAACATGCAAGTCAACGTTGTATTTGCTCCAAAATCCACCCAAGAATTTTGAGGCTTTCACTGCTGACCATTTTGGTGGAAGAGCGAGTGGGATTCTGAGAGCGTGCAAGGCTTATGCGAAAGTCGGCTATTACAACAAGGAGACTGAGGCACTTCTCAAGGTTTCCAAGAAGTTCGAGGAGTCGATGGAGAAGTACAACTGGTCGAGGCTTTTGAAAAGAATGAGGCTTCTTCAAAGAACAATCCGGTCGAGGCTTTTCCAAAGAACATTCCGGTCAAGGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0031625 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044424 GO:0044444 GO:0044464 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

260

Amino Acids

30.16

Weight (kDa)

9.03

Isoelectric Point (pI)

40.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	41 - 146	3.1e-16	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000808)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g01260 FvH4_4g19890 FvH4_4g19900 FvH4_4g19910 FvH4_4g23111
malus_domestica	MD16G1152700.v1.1
prunus_persica	Prupe.1G115900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0415111 RchiOBHm_Chr4g0421801 RchiOBHm_Chr4g0425521 RchiOBHm_Chr4g0425551
rosa_laevigata	RLG00000007355 RLG00000007357 RLG00000007358 RLG00000007360 RLG00000007361 RLG00000007364 RLG00000007366 RLG00000007640 RLG00000008097 RLG00000022500
rosa_multiflora	Rmu_co8278857.1_g000001 Rmu_sc0000635.1_g000001 Rmu_sc0000709.1_g000009 Rmu_sc0001900.1_g000008 Rmu_sc0001900.1_g000009 Rmu_sc0003748.1_g000014 Rmu_sc0008440.1_g000003 Rmu_sc0010306.1_g000005 Rmu_sc0012856.1_g000010 Rmu_sc0032188.1_g000001
rosa_roxburghii	Rroxscaffold_5G00364100 Rroxscaffold_5G00367460 Rroxscaffold_5G00367480 Rroxscaffold_5G00367490 Rroxscaffold_5G00367510 Rroxscaffold_5G00371110
rosa_rugosa	Rorug04G0176300 Rorug04G0203700 Rorug04G0203800 Rorug04G0203800 Rorug04G0203900 Rorug06G0289400
rosa_samantha	Rh4AG192100 Rh4AG235200 Rh4AG236000 Rh4AG260700 Rh4AG260900 Rh4BG190000 Rh4BG238700 Rh4BG266400 Rh4BG266600 Rh4BG266700 Rh4CG202900 Rh4CG250700 Rh4CG277700 Rh4CG277900 Rh4CG278000 Rh4DG235300 Rh4DG262700 Rh4DG262900 Rh4DG263100 Rh6BG409300 Rh6DG401700
rosa_wichuraiana	Rw4G016340 Rw4G019840 Rw4G022570 Rw4G022580 Rw4G022590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	107
Acc16I	TGCGCA	1 cut(s)	176
AccB7I	CCANNNNNTGG	1 cut(s)	406
AccI	GTMKAC	2 cut(s)	99, 195
AccII	CGCG	1 cut(s)	127
AciI	CCGC	2 cut(s)	127, 246
AclI	AACGTT	1 cut(s)	509
AclWI	GGATC	2 cut(s)	159, 409
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	538
AcuI	CTGAAG	1 cut(s)	187
AcvI	CACGTG	2 cut(s)	191, 357
AfaI	GTAC	2 cut(s)	182, 689
AfiI	CCNNNNNNNGG	5 cut(s)	205, 242, 298, 373, 406
AflIII	ACRYGT	4 cut(s)	188, 190, 331, 354
AgsI	TTSAA	4 cut(s)	34, 495, 709, 728
AjnI	CCWGG	1 cut(s)	417
AjuI	GAANNNNNNNTTGG	2 cut(s)	14, 46
Alw26I	GTCTC	3 cut(s)	13, 179, 629
AlwI	GGATC	2 cut(s)	159, 409
Ama87I	CYCGRG	1 cut(s)	367
AoxI	GGCC	2 cut(s)	3, 364
ApoI	RAATTY	1 cut(s)	538
ArsI	GACNNNNNNTTYG	2 cut(s)	344, 376
AspLEI	GCGC	1 cut(s)	177
AspS9I	GGNCC	3 cut(s)	55, 365, 462
AsuC2I	CCSGG	4 cut(s)	158, 275, 368, 369
AvaI	CYCGRG	1 cut(s)	367
AvaII	GGWCC	2 cut(s)	55, 462
BanII	GRGCYC	1 cut(s)	444
BbrPI	CACGTG	2 cut(s)	191, 357
BccI	CCATC	3 cut(s)	401, 452, 673
BceAI	ACGGC	1 cut(s)	451
BciT130I	CCWGG	1 cut(s)	419
BcnI	CCSGG	4 cut(s)	158, 275, 368, 369
BcoDI	GTCTC	3 cut(s)	13, 179, 629
BfaI	CTAG	1 cut(s)	327
Bme1390I	CCNGG	5 cut(s)	158, 275, 368, 369, 419
Bme18I	GGWCC	2 cut(s)	55, 462
BmeT110I	CYCGRG	1 cut(s)	367
BmgT120I	GGNCC	3 cut(s)	55, 365, 462
BmiI	GGNNCC	2 cut(s)	463, 464
BmrFI	CCNGG	5 cut(s)	158, 275, 368, 369, 419
BoxI	GACNNNNGTC	1 cut(s)	191
BpuEI	CTTGAG	2 cut(s)	361, 635
BpuMI	CCSGG	4 cut(s)	158, 275, 368, 369
BsaAI	YACGTR	4 cut(s)	172, 180, 191, 357
BsaJI	CCNNGG	1 cut(s)	367
BsaWI	WCCGGW	2 cut(s)	738, 765
BsaXI	ACNNNNNCTCC	2 cut(s)	59, 89
Bsc4I	CCNNNNNNNGG	5 cut(s)	205, 242, 298, 373, 406
Bse1I	ACTGG	1 cut(s)	698
BseBI	CCWGG	1 cut(s)	419
BseDI	CCNNGG	1 cut(s)	367
BseGI	GGATG	2 cut(s)	380, 393
BseLI	CCNNNNNNNGG	5 cut(s)	205, 242, 298, 373, 406
BseMII	CTCAG	3 cut(s)	75, 581, 630
BseNI	ACTGG	1 cut(s)	698
BseRI	GAGGAG	1 cut(s)	686
BseYI	CCCAGC	1 cut(s)	372
Bsh1236I	CGCG	1 cut(s)	127
Bsh1285I	CGRYCG	1 cut(s)	743
BshFI	GGCC	2 cut(s)	5, 366
BsiEI	CGRYCG	1 cut(s)	743
BsiHKCI	CYCGRG	1 cut(s)	367
BsiSI	CCGG	5 cut(s)	158, 275, 368, 739, 766
BsiWI	CGTACG	1 cut(s)	180
BslFI	GGGAC	1 cut(s)	448
BslI	CCNNNNNNNGG	5 cut(s)	205, 242, 298, 373, 406
BsmAI	GTCTC	3 cut(s)	13, 179, 629
BsmBI	CGTCTC	1 cut(s)	13
BsmFI	GGGAC	1 cut(s)	448
BsnI	GGCC	2 cut(s)	5, 366
BsoBI	CYCGRG	1 cut(s)	367
Bsp1286I	GDGCHC	1 cut(s)	444
Bsp143I	GATC	3 cut(s)	120, 151, 414
BspACI	CCGC	2 cut(s)	127, 246
BspANI	GGCC	2 cut(s)	5, 366
BspCNI	CTCAG	3 cut(s)	74, 582, 631
BspFNI	CGCG	1 cut(s)	127
BspLI	GGNNCC	2 cut(s)	463, 464
BspPI	GGATC	2 cut(s)	159, 409
BspQI	GCTCTTC	1 cut(s)	568
BsrI	ACTGG	1 cut(s)	698
BssECI	CCNNGG	1 cut(s)	367
BssMI	GATC	3 cut(s)	120, 151, 414
Bst2UI	CCWGG	1 cut(s)	419
Bst4CI	ACNGT	3 cut(s)	27, 83, 104
Bst6I	CTCTTC	3 cut(s)	206, 257, 568
BstBAI	YACGTR	4 cut(s)	172, 180, 191, 357
BstC8I	GCNNGC	2 cut(s)	440, 598
BstDEI	CTNAG	3 cut(s)	61, 590, 639
BstF5I	GGATG	2 cut(s)	380, 393
BstFNI	CGCG	1 cut(s)	127
BstHHI	GCGC	1 cut(s)	177
BstKTI	GATC	3 cut(s)	123, 154, 417
BstMAI	GTCTC	3 cut(s)	13, 179, 629
BstMBI	GATC	3 cut(s)	120, 151, 414
BstMCI	CGRYCG	1 cut(s)	743
BstMWI	GCNNNNNNNGC	2 cut(s)	554, 602
BstNI	CCWGG	1 cut(s)	419
BstNSI	RCATGY	2 cut(s)	335, 501
BstPAI	GACNNNNGTC	1 cut(s)	191
BstSCI	CCNGG	5 cut(s)	156, 273, 366, 367, 417
BstUI	CGCG	1 cut(s)	127
BstX2I	RGATCY	1 cut(s)	151
BstXI	CCANNNNNNTGG	1 cut(s)	569
BstYI	RGATCY	1 cut(s)	151
BsuRI	GGCC	2 cut(s)	5, 366
BtsCI	GGATG	2 cut(s)	380, 393
BtsI	GCAGTG	1 cut(s)	552
BtsIMutI	CAGTG	1 cut(s)	552
Cac8I	GCNNGC	2 cut(s)	440, 598
CfoI	GCGC	1 cut(s)	177
Cfr13I	GGNCC	3 cut(s)	55, 365, 462
Cfr9I	CCCGGG	1 cut(s)	367
CseI	GACGC	1 cut(s)	312
Csp6I	GTAC	2 cut(s)	181, 688
CviAII	CATG	2 cut(s)	332, 498
CviQI	GTAC	2 cut(s)	181, 688
DdeI	CTNAG	3 cut(s)	61, 590, 639
DpnI	GATC	3 cut(s)	122, 153, 416
DpnII	GATC	3 cut(s)	120, 151, 414
DrdI	GACNNNNNNGTC	1 cut(s)	107
DseDI	GACNNNNNNGTC	1 cut(s)	107
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	3 cut(s)	206, 257, 568
EarI	CTCTTC	3 cut(s)	206, 257, 568
EciI	GGCGGA	1 cut(s)	261
Eco24I	GRGCYC	1 cut(s)	444
Eco47I	GGWCC	2 cut(s)	55, 462
Eco57I	CTGAAG	1 cut(s)	187
Eco72I	CACGTG	2 cut(s)	191, 357
Eco88I	CYCGRG	1 cut(s)	367
EcoO109I	RGGNCCY	1 cut(s)	462
EcoRII	CCWGG	1 cut(s)	417
EcoT38I	GRGCYC	1 cut(s)	444
Esp3I	CGTCTC	1 cut(s)	13
FaeI	CATG	2 cut(s)	335, 501
FaiI	YATR	9 cut(s)	53, 107, 114, 167, 169, 321, 333, 499, 609
FaqI	GGGAC	1 cut(s)	448
FatI	CATG	2 cut(s)	331, 497
FauI	CCCGC	1 cut(s)	120
FblI	GTMKAC	2 cut(s)	99, 195
FokI	GGATG	2 cut(s)	367, 380
FriOI	GRGCYC	1 cut(s)	444
FspAI	RTGCGCAY	1 cut(s)	176
FspBI	CTAG	1 cut(s)	327
FspI	TGCGCA	1 cut(s)	176
GlaI	GCGC	1 cut(s)	176
GsaI	CCCAGC	1 cut(s)	376
HaeIII	GGCC	2 cut(s)	5, 366
HapII	CCGG	5 cut(s)	158, 275, 368, 739, 766
HgaI	GACGC	1 cut(s)	312
HhaI	GCGC	1 cut(s)	177
Hin1II	CATG	2 cut(s)	335, 501
Hin6I	GCGC	1 cut(s)	175
HinP1I	GCGC	1 cut(s)	175
HincII	GTYRAC	5 cut(s)	16, 100, 196, 307, 507
HindII	GTYRAC	5 cut(s)	16, 100, 196, 307, 507
HinfI	GANTC	4 cut(s)	249, 377, 586, 674
HpaI	GTTAAC	1 cut(s)	307
HpaII	CCGG	5 cut(s)	158, 275, 368, 739, 766
Hpy166II	GTNNAC	6 cut(s)	16, 100, 135, 196, 307, 507
Hpy188I	TCNGA	5 cut(s)	64, 79, 221, 288, 591
Hpy188III	TCNNGA	1 cut(s)	327
Hpy8I	GTNNAC	6 cut(s)	16, 100, 135, 196, 307, 507
Hpy99I	CGWCG	2 cut(s)	31, 101
HpyAV	CCTTC	3 cut(s)	142, 221, 454
HpyCH4III	ACNGT	3 cut(s)	27, 83, 104
HpyCH4IV	ACGT	5 cut(s)	171, 179, 190, 356, 509
HpyCH4V	TGCA	2 cut(s)	501, 600
HpyF10VI	GCNNNNNNNGC	2 cut(s)	554, 602
HpyF3I	CTNAG	3 cut(s)	61, 590, 639
HpySE526I	ACGT	5 cut(s)	171, 179, 190, 356, 509
Hsp92II	CATG	2 cut(s)	335, 501
HspAI	GCGC	1 cut(s)	175
KflI	GGGWCCC	1 cut(s)	462
KspAI	GTTAAC	1 cut(s)	307
Kzo9I	GATC	3 cut(s)	120, 151, 414
LguI	GCTCTTC	1 cut(s)	568
LmnI	GCTCC	1 cut(s)	525
MaeI	CTAG	1 cut(s)	327
MaeII	ACGT	5 cut(s)	171, 179, 190, 356, 509
MalI	GATC	3 cut(s)	122, 153, 416
MboI	GATC	3 cut(s)	120, 151, 414
MboII	GAAGA	8 cut(s)	130, 193, 244, 247, 250, 467, 585, 716
MflI	RGATCY	1 cut(s)	151
MhlI	GDGCHC	1 cut(s)	444
MluCI	AATT	4 cut(s)	85, 138, 538, 775
MlyI	GAGTC	2 cut(s)	243, 683
MmeI	TCCRAC	1 cut(s)	102
MseI	TTAA	1 cut(s)	306
MslI	CAYNNNNRTG	3 cut(s)	50, 170, 567
MspI	CCGG	5 cut(s)	158, 275, 368, 739, 766
MspR9I	CCNGG	5 cut(s)	158, 275, 368, 369, 419
MvaI	CCWGG	1 cut(s)	419
MvnI	CGCG	1 cut(s)	127
MwoI	GCNNNNNNNGC	2 cut(s)	554, 602
NciI	CCSGG	4 cut(s)	158, 275, 368, 369
NdeII	GATC	3 cut(s)	120, 151, 414
NlaIII	CATG	2 cut(s)	335, 501
NlaIV	GGNNCC	2 cut(s)	463, 464
NsbI	TGCGCA	1 cut(s)	176
NspI	RCATGY	2 cut(s)	335, 501
PciI	ACATGT	1 cut(s)	331
PciSI	GCTCTTC	1 cut(s)	568
PfeI	GAWTC	2 cut(s)	377, 586
Pfl23II	CGTACG	1 cut(s)	180
PflMI	CCANNNNNTGG	1 cut(s)	406
PfoI	TCCNGGA	2 cut(s)	156, 273
PleI	GAGTC	2 cut(s)	243, 682
PmaCI	CACGTG	2 cut(s)	191, 357
PmlI	CACGTG	2 cut(s)	191, 357
PpsI	GAGTC	2 cut(s)	243, 682
Ppu21I	YACGTR	4 cut(s)	172, 180, 191, 357
PpuMI	RGGWCCY	1 cut(s)	462
PscI	ACATGT	1 cut(s)	331
PshAI	GACNNNNGTC	1 cut(s)	191
Psp1406I	AACGTT	1 cut(s)	509
Psp5II	RGGWCCY	1 cut(s)	462
Psp6I	CCWGG	1 cut(s)	417
PspCI	CACGTG	2 cut(s)	191, 357
PspFI	CCCAGC	1 cut(s)	372
PspGI	CCWGG	1 cut(s)	417
PspLI	CGTACG	1 cut(s)	180
PspN4I	GGNNCC	2 cut(s)	463, 464
PspPI	GGNCC	3 cut(s)	55, 365, 462
PspPPI	RGGWCCY	1 cut(s)	462
PsuI	RGATCY	1 cut(s)	151
RsaI	GTAC	2 cut(s)	182, 689
RsaNI	GTAC	2 cut(s)	181, 688
RseI	CAYNNNNRTG	3 cut(s)	50, 170, 567
SalI	GTCGAC	2 cut(s)	98, 194
SapI	GCTCTTC	1 cut(s)	568
SaqAI	TTAA	1 cut(s)	306
Sau3AI	GATC	3 cut(s)	120, 151, 414
Sau96I	GGNCC	3 cut(s)	55, 365, 462
SchI	GAGTC	2 cut(s)	243, 683
ScrFI	CCNGG	5 cut(s)	158, 275, 368, 369, 419
SduI	GDGCHC	1 cut(s)	444
SetI	ASST	8 cut(s)	174, 182, 193, 201, 306, 359, 512, 657
SinI	GGWCC	2 cut(s)	55, 462
SmaI	CCCGGG	1 cut(s)	369
SmiMI	CAYNNNNRTG	3 cut(s)	50, 170, 567
SmlI	CTYRAG	2 cut(s)	340, 650
SmoI	CTYRAG	2 cut(s)	340, 650
SrfI	GCCCGGGC	1 cut(s)	369
Sse9I	AATT	4 cut(s)	85, 138, 538, 775
SsiI	CCGC	2 cut(s)	127, 246
SspMI	CTAG	1 cut(s)	327
StyD4I	CCNGG	5 cut(s)	156, 273, 366, 367, 417
TaaI	ACNGT	3 cut(s)	27, 83, 104
TaiI	ACGT	5 cut(s)	174, 182, 193, 359, 512
TaqI	TCGA	9 cut(s)	99, 195, 261, 351, 413, 669, 677, 698, 743
TasI	AATT	4 cut(s)	85, 138, 538, 775
TatI	WGTACW	1 cut(s)	687
TfiI	GAWTC	2 cut(s)	377, 586
Tru1I	TTAA	1 cut(s)	306
Tru9I	TTAA	1 cut(s)	306
TscAI	CASTG	1 cut(s)	559
TspDTI	ATGAA	1 cut(s)	478
TspMI	CCCGGG	1 cut(s)	367
TspRI	CASTG	1 cut(s)	559
Van91I	CCANNNNNTGG	1 cut(s)	406
VpaK11BI	GGWCC	2 cut(s)	55, 462
XapI	RAATTY	1 cut(s)	538
XbaI	TCTAGA	1 cut(s)	326
XceI	RCATGY	2 cut(s)	335, 501
XcmI	CCANNNNNNNNNTGG	1 cut(s)	473
XmaI	CCCGGG	1 cut(s)	367
XmiI	GTMKAC	2 cut(s)	99, 195
XspI	CTAG	1 cut(s)	327

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.