Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0000808

Physical Location & Seq

Genomic Coordinates Forward (+)

23384354 .. 23385646

Gene Structure 1293 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g19890.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGGCCAATAAAAAGATCATGGCCGAGTGGAGAATTTTGAAGAAGGATCTCCCGGAAAGCATATACGTGCGCACGTACGAGACTCGAATGGATCTCGTCAGGGCTGTGATCTTCGGAGCAGAAGGCACACCCTATGAGAATGGACTCTTCTTCTTCGACATCAAGTTCCCGGACAACTATCCTAATGAAGTAAATGAACCACCAATGGTTCATTATCGCTCACACGGATTAAAGCTTAACCCTAATCTCTACTCAAATGGTAAGGTGTGCTTGAGTCTACTCAATACGTGGTATGGCAAGGGCAGTGAGAATTGGGACCCATTTCAATCTACCCTCCTCCAAGTTTTGGTGTCGATTCAGGCGCTTGTTCTCAACGAGAAGCCCTTGTTGAACGAACAGGGTTTTGGGTTTTTGACCCGGTGGTTTGGCATGAAGGGTATGTCCCAAAATTATAACGACGACGCATTTATTGCAACATGCAGGTCGACGTTGTATTTGCTCCAAAATCCATCCAAGAACTTTGAGACTTTCACTGCCAAGCATTTTCGCGGAAGAGCGAGTCGGATTCTGAGAGCGTGCGACGATTATTCGAAACACGGCTACTATAACAAGGAGAGTGAGGCAGGCCCTTCGGTTAGCAAGGTTTCCAAGGAGTTCAAGGAGTCGATGGAGCATTTGTACCCACAACTGGTCAAGGCTTTCGAAAAGAATGAGGCACAACTGGTCAAGGCTTCCAAAAAGAATGAGGCATCTCCTAAGAACAAAAAGAATGATGCATCTCTAAAGAAAAATCGTGCGGAGAGGAGTTTGACAACGTTAATAGATCAAGTGAAGAAGAAAATTGAGCTGGCCGCTACTCCTGGCCGGTTATTCGTATTGTCTGGTGCATTGTTGGTCTCTGCTTTTGTAGCAGCAAGTCTAGCAGGTGATCGCATGCTTGCAGAGATAACCGCATGGTACTCCATTGTTAAAGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0031625 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044424 GO:0044444 GO:0044464 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

326

Amino Acids

36.95

Weight (kDa)

9.39

Isoelectric Point (pI)

31.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	6 - 125	4.2e-22	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000808)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g01260 FvH4_4g19890 FvH4_4g19900 FvH4_4g19910 FvH4_4g23111
malus_domestica	MD16G1152700.v1.1
prunus_persica	Prupe.1G115900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0415111 RchiOBHm_Chr4g0421801 RchiOBHm_Chr4g0425521 RchiOBHm_Chr4g0425551
rosa_laevigata	RLG00000007355 RLG00000007357 RLG00000007358 RLG00000007360 RLG00000007361 RLG00000007364 RLG00000007366 RLG00000007640 RLG00000008097 RLG00000022500
rosa_multiflora	Rmu_co8278857.1_g000001 Rmu_sc0000635.1_g000001 Rmu_sc0000709.1_g000009 Rmu_sc0001900.1_g000008 Rmu_sc0001900.1_g000009 Rmu_sc0003748.1_g000014 Rmu_sc0008440.1_g000003 Rmu_sc0010306.1_g000005 Rmu_sc0012856.1_g000010 Rmu_sc0032188.1_g000001
rosa_roxburghii	Rroxscaffold_5G00364100 Rroxscaffold_5G00367460 Rroxscaffold_5G00367480 Rroxscaffold_5G00367490 Rroxscaffold_5G00367510 Rroxscaffold_5G00371110
rosa_rugosa	Rorug04G0176300 Rorug04G0203700 Rorug04G0203800 Rorug04G0203800 Rorug04G0203900 Rorug06G0289400
rosa_samantha	Rh4AG192100 Rh4AG235200 Rh4AG236000 Rh4AG260700 Rh4AG260900 Rh4BG190000 Rh4BG238700 Rh4BG266400 Rh4BG266600 Rh4BG266700 Rh4CG202900 Rh4CG250700 Rh4CG277700 Rh4CG277900 Rh4CG278000 Rh4DG235300 Rh4DG262700 Rh4DG262900 Rh4DG263100 Rh6BG409300 Rh6DG401700
rosa_wichuraiana	Rw4G016340 Rw4G019840 Rw4G022570 Rw4G022580 Rw4G022590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	453
AarI	CACCTGC	1 cut(s)	914
Acc16I	TGCGCA	1 cut(s)	71
Acc36I	ACCTGC	2 cut(s)	471, 914
AccB7I	CCANNNNNTGG	1 cut(s)	346
AccI	GTMKAC	2 cut(s)	277, 485
AccII	CGCG	1 cut(s)	549
AciI	CCGC	4 cut(s)	549, 797, 852, 951
AclI	AACGTT	1 cut(s)	815
AclWI	GGATC	2 cut(s)	54, 99
AcoI	YGGCCR	4 cut(s)	3, 21, 849, 862
AcsI	RAATTY	1 cut(s)	33
AfaI	GTAC	3 cut(s)	77, 680, 959
AfiI	CCNNNNNNNGG	2 cut(s)	346, 688
AgsI	TTSAA	4 cut(s)	40, 326, 391, 658
AjnI	CCWGG	1 cut(s)	859
AjuI	GAANNNNNNNTTGG	2 cut(s)	387, 419
AluBI	AGCT	2 cut(s)	235, 847
AluI	AGCT	2 cut(s)	235, 847
Alw26I	GTCTC	3 cut(s)	74, 518, 901
AlwI	GGATC	2 cut(s)	54, 99
AoxI	GGCC	5 cut(s)	3, 21, 625, 849, 862
ApeKI	GCWGC	1 cut(s)	911
ApoI	RAATTY	1 cut(s)	33
ArsI	GACNNNNNNTTYG	2 cut(s)	478, 510
AspLEI	GCGC	2 cut(s)	72, 364
AspS9I	GGNCC	2 cut(s)	316, 626
AsuC2I	CCSGG	3 cut(s)	53, 170, 418
AsuHPI	GGTGA	1 cut(s)	938
AsuII	TTCGAA	2 cut(s)	590, 702
AvaII	GGWCC	1 cut(s)	316
BalI	TGGCCA	1 cut(s)	5
BbvI	GCAGC	1 cut(s)	923
BccI	CCATC	2 cut(s)	517, 661
BceAI	ACGGC	1 cut(s)	613
BcgI	CGANNNNNNTGC	2 cut(s)	612, 646
BciT130I	CCWGG	1 cut(s)	861
BcnI	CCSGG	3 cut(s)	53, 170, 418
BcoDI	GTCTC	3 cut(s)	74, 518, 901
BfaI	CTAG	1 cut(s)	920
BfoI	RGCGCY	1 cut(s)	365
BfuAI	ACCTGC	2 cut(s)	471, 914
BisI	GCNGC	2 cut(s)	852, 912
BlsI	GCNGC	2 cut(s)	853, 913
Bme1390I	CCNGG	4 cut(s)	53, 170, 418, 861
Bme18I	GGWCC	1 cut(s)	316
BmgT120I	GGNCC	2 cut(s)	316, 626
BmiI	GGNNCC	2 cut(s)	317, 318
BmrFI	CCNGG	4 cut(s)	53, 170, 418, 861
BmsI	GCATC	3 cut(s)	758, 763, 785
Bpu14I	TTCGAA	2 cut(s)	590, 702
BpuEI	CTTGAG	1 cut(s)	292
BpuMI	CCSGG	3 cut(s)	53, 170, 418
BsaAI	YACGTR	3 cut(s)	67, 75, 288
BsaI	GGTCTC	1 cut(s)	901
BsaJI	CCNNGG	1 cut(s)	648
BsaXI	ACNNNNNCTCC	2 cut(s)	662, 692
Bsc4I	CCNNNNNNNGG	2 cut(s)	346, 688
Bse118I	RCCGGY	1 cut(s)	864
Bse1I	ACTGG	2 cut(s)	693, 726
BseBI	CCWGG	1 cut(s)	861
BseDI	CCNNGG	1 cut(s)	648
BseGI	GGATG	1 cut(s)	509
BseLI	CCNNNNNNNGG	2 cut(s)	346, 688
BseMII	CTCAG	1 cut(s)	560
BseNI	ACTGG	2 cut(s)	693, 726
BseRI	GAGGAG	2 cut(s)	326, 817
BseXI	GCAGC	1 cut(s)	923
Bsh1236I	CGCG	1 cut(s)	549
BshFI	GGCC	5 cut(s)	5, 23, 627, 851, 864
BsiSI	CCGG	4 cut(s)	53, 170, 418, 865
BsiWI	CGTACG	1 cut(s)	75
BslFI	GGGAC	2 cut(s)	329, 427
BslI	CCNNNNNNNGG	2 cut(s)	346, 688
BsmAI	GTCTC	3 cut(s)	74, 518, 901
BsmFI	GGGAC	2 cut(s)	329, 427
BsnI	GGCC	5 cut(s)	5, 23, 627, 851, 864
Bso31I	GGTCTC	1 cut(s)	901
Bsp119I	TTCGAA	2 cut(s)	590, 702
Bsp143I	GATC	6 cut(s)	15, 46, 91, 108, 823, 928
BspACI	CCGC	4 cut(s)	549, 797, 852, 951
BspANI	GGCC	5 cut(s)	5, 23, 627, 851, 864
BspCNI	CTCAG	1 cut(s)	561
BspFNI	CGCG	1 cut(s)	549
BspLI	GGNNCC	2 cut(s)	317, 318
BspMI	ACCTGC	2 cut(s)	471, 914
BspPI	GGATC	2 cut(s)	54, 99
BspQI	GCTCTTC	1 cut(s)	547
BspT104I	TTCGAA	2 cut(s)	590, 702
BspTNI	GGTCTC	1 cut(s)	901
BsrFI	RCCGGY	1 cut(s)	864
BsrI	ACTGG	2 cut(s)	693, 726
BssAI	RCCGGY	1 cut(s)	864
BssECI	CCNNGG	1 cut(s)	648
BssMI	GATC	6 cut(s)	15, 46, 91, 108, 823, 928
BssT1I	CCWWGG	1 cut(s)	648
Bst2UI	CCWGG	1 cut(s)	861
Bst6I	CTCTTC	2 cut(s)	152, 547
BstAPI	GCANNNNNTGC	1 cut(s)	470
BstBAI	YACGTR	3 cut(s)	67, 75, 288
BstBI	TTCGAA	2 cut(s)	590, 702
BstC8I	GCNNGC	5 cut(s)	577, 625, 849, 935, 939
BstDEI	CTNAG	2 cut(s)	569, 756
BstF5I	GGATG	1 cut(s)	509
BstFNI	CGCG	1 cut(s)	549
BstH2I	RGCGCY	1 cut(s)	365
BstHHI	GCGC	2 cut(s)	72, 364
BstKTI	GATC	6 cut(s)	18, 49, 94, 111, 826, 931
BstMAI	GTCTC	3 cut(s)	74, 518, 901
BstMBI	GATC	6 cut(s)	15, 46, 91, 108, 823, 928
BstMWI	GCNNNNNNNGC	3 cut(s)	470, 908, 920
BstNI	CCWGG	1 cut(s)	861
BstNSI	RCATGY	2 cut(s)	480, 937
BstSCI	CCNGG	4 cut(s)	51, 168, 416, 859
BstUI	CGCG	1 cut(s)	549
BstV1I	GCAGC	1 cut(s)	923
BstX2I	RGATCY	2 cut(s)	46, 91
BstYI	RGATCY	2 cut(s)	46, 91
BsuRI	GGCC	5 cut(s)	5, 23, 627, 851, 864
BtsCI	GGATG	1 cut(s)	509
BtsI	GCAGTG	2 cut(s)	310, 531
BtsIMutI	CAGTG	2 cut(s)	310, 531
BveI	ACCTGC	2 cut(s)	471, 914
Cac8I	GCNNGC	5 cut(s)	577, 625, 849, 935, 939
CfoI	GCGC	2 cut(s)	72, 364
Cfr10I	RCCGGY	1 cut(s)	864
Cfr13I	GGNCC	2 cut(s)	316, 626
CseI	GACGC	1 cut(s)	470
Csp6I	GTAC	3 cut(s)	76, 679, 958
CviAII	CATG	5 cut(s)	19, 430, 477, 934, 954
CviQI	GTAC	3 cut(s)	76, 679, 958
DdeI	CTNAG	2 cut(s)	569, 756
DpnI	GATC	6 cut(s)	17, 48, 93, 110, 825, 930
DpnII	GATC	6 cut(s)	15, 46, 91, 108, 823, 928
EaeI	YGGCCR	4 cut(s)	3, 21, 849, 862
Eam1104I	CTCTTC	2 cut(s)	152, 547
EarI	CTCTTC	2 cut(s)	152, 547
Eco130I	CCWWGG	1 cut(s)	648
Eco31I	GGTCTC	1 cut(s)	901
Eco47I	GGWCC	1 cut(s)	316
EcoO109I	RGGNCCY	2 cut(s)	316, 626
EcoRII	CCWGG	1 cut(s)	859
EcoT14I	CCWWGG	1 cut(s)	648
EcoT22I	ATGCAT	1 cut(s)	778
ErhI	CCWWGG	1 cut(s)	648
FaeI	CATG	5 cut(s)	22, 433, 480, 937, 957
FalI	AAGNNNNNCTT	2 cut(s)	254, 286
FaqI	GGGAC	2 cut(s)	329, 427
FatI	CATG	5 cut(s)	18, 429, 476, 933, 953
FblI	GTMKAC	2 cut(s)	277, 485
Fnu4HI	GCNGC	2 cut(s)	852, 912
FokI	GGATG	1 cut(s)	496
Fsp4HI	GCNGC	2 cut(s)	852, 912
FspAI	RTGCGCAY	1 cut(s)	71
FspBI	CTAG	1 cut(s)	920
FspI	TGCGCA	1 cut(s)	71
GlaI	GCGC	2 cut(s)	71, 363
GluI	GCNGC	2 cut(s)	852, 912
HaeII	RGCGCY	1 cut(s)	365
HaeIII	GGCC	5 cut(s)	5, 23, 627, 851, 864
HapII	CCGG	4 cut(s)	53, 170, 418, 865
HgaI	GACGC	1 cut(s)	470
HhaI	GCGC	2 cut(s)	72, 364
Hin1II	CATG	5 cut(s)	22, 433, 480, 937, 957
Hin6I	GCGC	2 cut(s)	70, 362
HinP1I	GCGC	2 cut(s)	70, 362
HincII	GTYRAC	1 cut(s)	486
HindII	GTYRAC	1 cut(s)	486
HindIII	AAGCTT	1 cut(s)	233
HinfI	GANTC	7 cut(s)	82, 144, 274, 355, 559, 565, 662
HpaII	CCGG	4 cut(s)	53, 170, 418, 865
HphI	GGTGA	1 cut(s)	938
Hpy166II	GTNNAC	2 cut(s)	278, 486
Hpy188I	TCNGA	3 cut(s)	116, 564, 570
Hpy8I	GTNNAC	2 cut(s)	278, 486
Hpy99I	CGWCG	4 cut(s)	461, 464, 490, 584
HpyAV	CCTTC	4 cut(s)	37, 116, 427, 639
HpyCH4IV	ACGT	5 cut(s)	66, 74, 287, 488, 815
HpyCH4V	TGCA	5 cut(s)	473, 480, 776, 887, 941
HpyF10VI	GCNNNNNNNGC	3 cut(s)	470, 908, 920
HpyF3I	CTNAG	2 cut(s)	569, 756
HpySE526I	ACGT	5 cut(s)	66, 74, 287, 488, 815
Hsp92II	CATG	5 cut(s)	22, 433, 480, 937, 957
HspAI	GCGC	2 cut(s)	70, 362
KflI	GGGWCCC	1 cut(s)	316
Kzo9I	GATC	6 cut(s)	15, 46, 91, 108, 823, 928
LguI	GCTCTTC	1 cut(s)	547
LmnI	GCTCC	3 cut(s)	116, 504, 670
Lsp1109I	GCAGC	1 cut(s)	923
LweI	GCATC	3 cut(s)	758, 763, 785
MaeI	CTAG	1 cut(s)	920
MaeII	ACGT	5 cut(s)	66, 74, 287, 488, 815
MalI	GATC	6 cut(s)	17, 48, 93, 110, 825, 930
MboI	GATC	6 cut(s)	15, 46, 91, 108, 823, 928
MboII	GAAGA	8 cut(s)	52, 103, 139, 142, 145, 564, 844, 847
MflI	RGATCY	2 cut(s)	46, 91
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	4 cut(s)	33, 310, 448, 840
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	5 cut(s)	76, 138, 283, 568, 671
MmeI	TCCRAC	1 cut(s)	542
MnlI	CCTC	6 cut(s)	344, 347, 613, 706, 739, 795
Mox20I	TGGCCA	1 cut(s)	5
Mph1103I	ATGCAT	1 cut(s)	778
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	4 cut(s)	230, 237, 818, 969
MslI	CAYNNNNRTG	1 cut(s)	65
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	4 cut(s)	53, 170, 418, 865
MspR9I	CCNGG	4 cut(s)	53, 170, 418, 861
MvaI	CCWGG	1 cut(s)	861
MvnI	CGCG	1 cut(s)	549
MwoI	GCNNNNNNNGC	3 cut(s)	470, 908, 920
NciI	CCSGG	3 cut(s)	53, 170, 418
NdeII	GATC	6 cut(s)	15, 46, 91, 108, 823, 928
NlaIII	CATG	5 cut(s)	22, 433, 480, 937, 957
NlaIV	GGNNCC	2 cut(s)	317, 318
NmeAIII	GCCGAG	1 cut(s)	49
NsbI	TGCGCA	1 cut(s)	71
NsiI	ATGCAT	1 cut(s)	778
NspI	RCATGY	2 cut(s)	480, 937
NspV	TTCGAA	2 cut(s)	590, 702
PaeI	GCATGC	1 cut(s)	937
PaqCI	CACCTGC	1 cut(s)	914
PciSI	GCTCTTC	1 cut(s)	547
PfeI	GAWTC	2 cut(s)	355, 565
Pfl23II	CGTACG	1 cut(s)	75
PflMI	CCANNNNNTGG	1 cut(s)	346
PfoI	TCCNGGA	2 cut(s)	51, 168
PkrI	GCNGC	2 cut(s)	853, 913
PleI	GAGTC	5 cut(s)	76, 138, 282, 567, 670
PpsI	GAGTC	5 cut(s)	76, 138, 282, 567, 670
Ppu21I	YACGTR	3 cut(s)	67, 75, 288
PpuMI	RGGWCCY	1 cut(s)	316
PsiI	TTATAA	1 cut(s)	453
Psp1406I	AACGTT	1 cut(s)	815
Psp5II	RGGWCCY	1 cut(s)	316
Psp6I	CCWGG	1 cut(s)	859
PspGI	CCWGG	1 cut(s)	859
PspLI	CGTACG	1 cut(s)	75
PspN4I	GGNNCC	2 cut(s)	317, 318
PspPI	GGNCC	2 cut(s)	316, 626
PspPPI	RGGWCCY	1 cut(s)	316
PsuI	RGATCY	2 cut(s)	46, 91
RsaI	GTAC	3 cut(s)	77, 680, 959
RsaNI	GTAC	3 cut(s)	76, 679, 958
RseI	CAYNNNNRTG	1 cut(s)	65
SalI	GTCGAC	1 cut(s)	484
SapI	GCTCTTC	1 cut(s)	547
SaqAI	TTAA	4 cut(s)	230, 237, 818, 969
SatI	GCNGC	2 cut(s)	852, 912
Sau3AI	GATC	6 cut(s)	15, 46, 91, 108, 823, 928
Sau96I	GGNCC	2 cut(s)	316, 626
SchI	GAGTC	5 cut(s)	76, 138, 283, 568, 671
ScrFI	CCNGG	4 cut(s)	53, 170, 418, 861
SfaNI	GCATC	3 cut(s)	758, 763, 785
SfuI	TTCGAA	2 cut(s)	590, 702
SinI	GGWCC	1 cut(s)	316
SmiMI	CAYNNNNRTG	1 cut(s)	65
SmlI	CTYRAG	1 cut(s)	271
SmoI	CTYRAG	1 cut(s)	271
SphI	GCATGC	1 cut(s)	937
Sse9I	AATT	4 cut(s)	33, 310, 448, 840
SsiI	CCGC	4 cut(s)	549, 797, 852, 951
SspMI	CTAG	1 cut(s)	920
StyD4I	CCNGG	4 cut(s)	51, 168, 416, 859
StyI	CCWWGG	1 cut(s)	648
TaiI	ACGT	5 cut(s)	69, 77, 290, 491, 818
TaqI	TCGA	7 cut(s)	85, 156, 353, 485, 590, 665, 702
TasI	AATT	4 cut(s)	33, 310, 448, 840
TauI	GCSGC	1 cut(s)	854
TfiI	GAWTC	2 cut(s)	355, 565
Tru1I	TTAA	4 cut(s)	230, 237, 818, 969
Tru9I	TTAA	4 cut(s)	230, 237, 818, 969
TscAI	CASTG	2 cut(s)	310, 538
TseI	GCWGC	1 cut(s)	911
TspDTI	ATGAA	4 cut(s)	200, 201, 210, 446
TspGWI	ACGGA	1 cut(s)	240
TspRI	CASTG	2 cut(s)	310, 538
Van91I	CCANNNNNTGG	1 cut(s)	346
VpaK11BI	GGWCC	1 cut(s)	316
XapI	RAATTY	1 cut(s)	33
XceI	RCATGY	2 cut(s)	480, 937
XmiI	GTMKAC	2 cut(s)	277, 485
XspI	CTAG	1 cut(s)	920
Zsp2I	ATGCAT	1 cut(s)	778

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.