Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0000808

Physical Location & Seq

Genomic Coordinates Forward (+)

44064565 .. 44065699

Gene Structure 1135 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG266600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGGCGCCCTTAGTGGAGAGCTTCCACAGATTCGACGTCGTCTCGGACCATTCAGACCACCACTACAGCAACACTGACGGGAACGGAATCAGTTTCACCTACTGTGGAAGCACAGTGTACAAGAAGATCATGCGTGAGTGGAAAATTCTAAGAAAGCACCTCCCGGACTCGACCTATGTGCGAGTGTACAACACTCGAATCGACCTACTGAGAGCCGTCATTGTTGGAGCAGCCGGCACGCCCTACCACGACGGATTGTTCTTCTTCGACATCAAGTTCCCGTCCAACTACCCGTACCAACCGCCACAGGTCCATTACCATTCCCACGGATTGAGGCTCAACCCGAATCTGTATGAAAGCGGCAAGGTCTGTCTGAGCTTGCTCAATACGTGGTCCGGGAAAAAGAAAGAGATGTGGGATCCAAATCAGTCGACTATCCTCCAAGTGCTGGTGTCTATACAAGGACTTGTTCTGAACGAAAAGCCCTTCTATAATGAACCCGTTCGTCTCCGTATCTTTCAGGAGGAGAACTCCCGTCGTTACAATGAGGACGCGTTTATCAAAACGTGCAAGACGACGTTGTATTTGCTCCAAAAACCGCCCAAGAATTTTGAGCTTTTCACCGCCGACCATTTTCGACAGAGAGCAAACCGGATACTGAGAGCTTGTAACGCTTACACTAACAGTCGTGTGGGAGTCGGGTACTACATAGATGACAATGACAATATAACTAAGGATGACACTAAAGTTAAGGACTCTGCAATTTCAATTCACCCTGTTTCGACGACATTTATTGATTCGATGGAACAGTTGTACCCGAAACTCGTTGTGGTTTTTAGATGGAATAAGGCCTCAAATTTGGTCGAGCACTTGAATTTGGAGAACGTTACGACGCGGCGAGAGGCTGCAGGCATGCTTTGTCGTCCTTATTGTCTTCTTCTTTGTTGTGCATTAGTAGCACTGATTTGTTACTTCATGTTTAGGGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0031625 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044424 GO:0044444 GO:0044464 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

329

Amino Acids

38.2

Weight (kDa)

8.92

Isoelectric Point (pI)

38.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	43 - 181	3.2e-25	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000808)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g01260 FvH4_4g19890 FvH4_4g19900 FvH4_4g19910 FvH4_4g23111
malus_domestica	MD16G1152700.v1.1
prunus_persica	Prupe.1G115900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0415111 RchiOBHm_Chr4g0421801 RchiOBHm_Chr4g0425521 RchiOBHm_Chr4g0425551
rosa_laevigata	RLG00000007355 RLG00000007357 RLG00000007358 RLG00000007360 RLG00000007361 RLG00000007364 RLG00000007366 RLG00000007640 RLG00000008097 RLG00000022500
rosa_multiflora	Rmu_co8278857.1_g000001 Rmu_sc0000635.1_g000001 Rmu_sc0000709.1_g000009 Rmu_sc0001900.1_g000008 Rmu_sc0001900.1_g000009 Rmu_sc0003748.1_g000014 Rmu_sc0008440.1_g000003 Rmu_sc0010306.1_g000005 Rmu_sc0012856.1_g000010 Rmu_sc0032188.1_g000001
rosa_roxburghii	Rroxscaffold_5G00364100 Rroxscaffold_5G00367460 Rroxscaffold_5G00367480 Rroxscaffold_5G00367490 Rroxscaffold_5G00367510 Rroxscaffold_5G00371110
rosa_rugosa	Rorug04G0176300 Rorug04G0203700 Rorug04G0203800 Rorug04G0203800 Rorug04G0203900 Rorug06G0289400
rosa_samantha	Rh4AG192100 Rh4AG235200 Rh4AG236000 Rh4AG260700 Rh4AG260900 Rh4BG190000 Rh4BG238700 Rh4BG266400 Rh4BG266600 Rh4BG266700 Rh4CG202900 Rh4CG250700 Rh4CG277700 Rh4CG277900 Rh4CG278000 Rh4DG235300 Rh4DG262700 Rh4DG262900 Rh4DG263100 Rh6BG409300 Rh6DG401700
rosa_wichuraiana	Rw4G016340 Rw4G019840 Rw4G022570 Rw4G022580 Rw4G022590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	39
AccB1I	GGYRCC	1 cut(s)	4
AccB7I	CCANNNNNTGG	1 cut(s)	448
AccI	GTMKAC	1 cut(s)	431
AccII	CGCG	2 cut(s)	554, 895
AciI	CCGC	5 cut(s)	302, 360, 599, 624, 895
AclI	AACGTT	1 cut(s)	885
AclWI	GGATC	2 cut(s)	413, 426
AcsI	RAATTY	4 cut(s)	144, 607, 856, 874
AcyI	GRCGYC	2 cut(s)	5, 36
AfaI	GTAC	5 cut(s)	119, 188, 296, 704, 815
AfiI	CCNNNNNNNGG	1 cut(s)	448
AflIII	ACRYGT	1 cut(s)	552
AgsI	TTSAA	2 cut(s)	768, 874
AluBI	AGCT	4 cut(s)	21, 378, 616, 665
AluI	AGCT	4 cut(s)	21, 378, 616, 665
Alw21I	GWGCWC	1 cut(s)	870
Alw26I	GTCTC	2 cut(s)	46, 512
AlwI	GGATC	2 cut(s)	413, 426
AoxI	GGCC	1 cut(s)	849
ApeKI	GCWGC	2 cut(s)	230, 905
ApoI	RAATTY	4 cut(s)	144, 607, 856, 874
ArsI	GACNNNNNNTTYG	2 cut(s)	568, 600
Asp700I	GAANNNNTTC	1 cut(s)	501
AspLEI	GCGC	1 cut(s)	7
AspS9I	GGNCC	3 cut(s)	46, 310, 393
AsuC2I	CCSGG	2 cut(s)	164, 397
AsuHPI	GGTGA	3 cut(s)	88, 613, 764
AvaII	GGWCC	3 cut(s)	46, 310, 393
BaeI	ACNNNNGTAYC	2 cut(s)	797, 830
BamHI	GGATCC	1 cut(s)	418
BanI	GGYRCC	1 cut(s)	4
BbsI	GAAGAC	1 cut(s)	926
Bbv12I	GWGCWC	1 cut(s)	870
BbvI	GCAGC	2 cut(s)	242, 892
BccI	CCATC	2 cut(s)	796, 834
BceAI	ACGGC	1 cut(s)	200
BcgI	CGANNNNNNTGC	2 cut(s)	160, 194
BciVI	GTATCC	1 cut(s)	648
BcnI	CCSGG	2 cut(s)	164, 397
BcoDI	GTCTC	2 cut(s)	46, 512
BfmI	CTRYAG	2 cut(s)	64, 906
BfoI	RGCGCY	1 cut(s)	8
BfuI	GTATCC	1 cut(s)	648
BisI	GCNGC	4 cut(s)	231, 361, 896, 906
BlsI	GCNGC	4 cut(s)	232, 362, 897, 907
Bme1390I	CCNGG	2 cut(s)	164, 397
Bme18I	GGWCC	3 cut(s)	46, 310, 393
BmgT120I	GGNCC	3 cut(s)	46, 310, 393
BmiI	GGNNCC	2 cut(s)	6, 420
BmrFI	CCNGG	2 cut(s)	164, 397
BpiI	GAAGAC	1 cut(s)	926
BplI	GAGNNNNNCTC	2 cut(s)	515, 547
BpuMI	CCSGG	2 cut(s)	164, 397
BsaAI	YACGTR	1 cut(s)	390
BsaBI	GATNNNNATC	1 cut(s)	423
BsaHI	GRCGYC	2 cut(s)	5, 36
BsaJI	CCNNGG	1 cut(s)	325
BsaWI	WCCGGW	1 cut(s)	651
Bsc4I	CCNNNNNNNGG	1 cut(s)	448
Bse118I	RCCGGY	1 cut(s)	233
Bse8I	GATNNNNATC	1 cut(s)	423
BseDI	CCNNGG	1 cut(s)	325
BseGI	GGATG	1 cut(s)	742
BseJI	GATNNNNATC	1 cut(s)	423
BseLI	CCNNNNNNNGG	1 cut(s)	448
BseMII	CTCAG	3 cut(s)	200, 365, 650
BseRI	GAGGAG	1 cut(s)	539
BseXI	GCAGC	2 cut(s)	242, 892
Bsh1236I	CGCG	2 cut(s)	554, 895
BshFI	GGCC	1 cut(s)	851
BshNI	GGYRCC	1 cut(s)	4
BsiHKAI	GWGCWC	1 cut(s)	870
BsiSI	CCGG	4 cut(s)	164, 234, 396, 652
BslI	CCNNNNNNNGG	1 cut(s)	448
BsmAI	GTCTC	2 cut(s)	46, 512
BsmBI	CGTCTC	2 cut(s)	46, 512
BsnI	GGCC	1 cut(s)	851
Bsp1286I	GDGCHC	1 cut(s)	870
Bsp1407I	TGTACA	2 cut(s)	117, 186
Bsp143I	GATC	2 cut(s)	126, 418
BspACI	CCGC	5 cut(s)	302, 360, 599, 624, 895
BspANI	GGCC	1 cut(s)	851
BspCNI	CTCAG	3 cut(s)	201, 366, 651
BspFNI	CGCG	2 cut(s)	554, 895
BspLI	GGNNCC	2 cut(s)	6, 420
BspMAI	CTGCAG	1 cut(s)	910
BspPI	GGATC	2 cut(s)	413, 426
BspT107I	GGYRCC	1 cut(s)	4
BsrFI	RCCGGY	1 cut(s)	233
BsrGI	TGTACA	2 cut(s)	117, 186
BssAI	RCCGGY	1 cut(s)	233
BssECI	CCNNGG	1 cut(s)	325
BssMI	GATC	2 cut(s)	126, 418
BssNI	GRCGYC	2 cut(s)	5, 36
Bst4CI	ACNGT	4 cut(s)	104, 115, 686, 810
BstACI	GRCGYC	2 cut(s)	5, 36
BstAUI	TGTACA	2 cut(s)	117, 186
BstBAI	YACGTR	1 cut(s)	390
BstC8I	GCNNGC	5 cut(s)	235, 239, 380, 910, 914
BstDEI	CTNAG	7 cut(s)	10, 149, 209, 374, 659, 732, 987
BstDSI	CCRYGG	1 cut(s)	325
BstF5I	GGATG	1 cut(s)	742
BstFNI	CGCG	2 cut(s)	554, 895
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	1 cut(s)	7
BstKTI	GATC	2 cut(s)	129, 421
BstMAI	GTCTC	2 cut(s)	46, 512
BstMBI	GATC	2 cut(s)	126, 418
BstMWI	GCNNNNNNNGC	2 cut(s)	671, 956
BstNSI	RCATGY	1 cut(s)	916
BstSCI	CCNGG	2 cut(s)	162, 395
BstSFI	CTRYAG	2 cut(s)	64, 906
BstUI	CGCG	2 cut(s)	554, 895
BstV1I	GCAGC	2 cut(s)	242, 892
BstV2I	GAAGAC	1 cut(s)	926
BstX2I	RGATCY	1 cut(s)	418
BstYI	RGATCY	1 cut(s)	418
BsuI	GTATCC	1 cut(s)	648
BsuRI	GGCC	1 cut(s)	851
BtgI	CCRYGG	1 cut(s)	325
BtsCI	GGATG	1 cut(s)	742
BtsIMutI	CAGTG	3 cut(s)	72, 120, 959
Cac8I	GCNNGC	5 cut(s)	235, 239, 380, 910, 914
CfoI	GCGC	1 cut(s)	7
Cfr10I	RCCGGY	1 cut(s)	233
Cfr13I	GGNCC	3 cut(s)	46, 310, 393
CseI	GACGC	2 cut(s)	560, 901
Csp6I	GTAC	5 cut(s)	118, 187, 295, 703, 814
CviAII	CATG	3 cut(s)	130, 913, 976
CviQI	GTAC	5 cut(s)	118, 187, 295, 703, 814
DdeI	CTNAG	7 cut(s)	10, 149, 209, 374, 659, 732, 987
DinI	GGCGCC	1 cut(s)	6
DpnI	GATC	2 cut(s)	128, 420
DpnII	GATC	2 cut(s)	126, 418
Eco147I	AGGCCT	1 cut(s)	851
Eco47I	GGWCC	3 cut(s)	46, 310, 393
EgeI	GGCGCC	1 cut(s)	6
EheI	GGCGCC	1 cut(s)	6
Esp3I	CGTCTC	2 cut(s)	46, 512
FaeI	CATG	3 cut(s)	133, 916, 979
FaiI	YATR	9 cut(s)	131, 177, 354, 458, 492, 710, 728, 914, 977
FatI	CATG	3 cut(s)	129, 912, 975
FblI	GTMKAC	1 cut(s)	431
Fnu4HI	GCNGC	4 cut(s)	231, 361, 896, 906
FokI	GGATG	1 cut(s)	749
Fsp4HI	GCNGC	4 cut(s)	231, 361, 896, 906
GlaI	GCGC	1 cut(s)	6
GluI	GCNGC	4 cut(s)	231, 361, 896, 906
HaeII	RGCGCY	1 cut(s)	8
HaeIII	GGCC	1 cut(s)	851
HapII	CCGG	4 cut(s)	164, 234, 396, 652
HgaI	GACGC	2 cut(s)	560, 901
HhaI	GCGC	1 cut(s)	7
Hin1I	GRCGYC	2 cut(s)	5, 36
Hin1II	CATG	3 cut(s)	133, 916, 979
Hin6I	GCGC	1 cut(s)	5
HinP1I	GCGC	1 cut(s)	5
HincII	GTYRAC	1 cut(s)	432
HindII	GTYRAC	1 cut(s)	432
HinfI	GANTC	8 cut(s)	30, 87, 167, 198, 346, 696, 755, 797
HpaII	CCGG	4 cut(s)	164, 234, 396, 652
HphI	GGTGA	3 cut(s)	88, 613, 764
Hpy166II	GTNNAC	3 cut(s)	118, 187, 432
Hpy188I	TCNGA	4 cut(s)	46, 55, 375, 474
Hpy188III	TCNNGA	1 cut(s)	521
Hpy8I	GTNNAC	3 cut(s)	118, 187, 432
Hpy99I	CGWCG	7 cut(s)	38, 41, 254, 540, 580, 787, 895
HpyAV	CCTTC	1 cut(s)	496
HpyCH4III	ACNGT	4 cut(s)	104, 115, 686, 810
HpyCH4IV	ACGT	5 cut(s)	36, 389, 566, 578, 885
HpyCH4V	TGCA	4 cut(s)	570, 761, 908, 950
HpyF10VI	GCNNNNNNNGC	2 cut(s)	671, 956
HpyF3I	CTNAG	7 cut(s)	10, 149, 209, 374, 659, 732, 987
HpySE526I	ACGT	5 cut(s)	36, 389, 566, 578, 885
Hsp92I	GRCGYC	2 cut(s)	5, 36
Hsp92II	CATG	3 cut(s)	133, 916, 979
HspAI	GCGC	1 cut(s)	5
KasI	GGCGCC	1 cut(s)	4
KroI	GCCGGC	1 cut(s)	233
KroNI	GCCGGC	1 cut(s)	235
Kzo9I	GATC	2 cut(s)	126, 418
LmnI	GCTCC	2 cut(s)	227, 594
LpnPI	CCDG	9 cut(s)	177, 247, 293, 409, 434, 506, 665, 789, 894
Lsp1109I	GCAGC	2 cut(s)	242, 892
MaeII	ACGT	5 cut(s)	36, 389, 566, 578, 885
MaeIII	GTNAC	4 cut(s)	539, 668, 886, 968
MalI	GATC	2 cut(s)	128, 420
MboI	GATC	2 cut(s)	126, 418
MboII	GAAGA	5 cut(s)	136, 253, 256, 926, 929
MflI	RGATCY	1 cut(s)	418
MhlI	GDGCHC	1 cut(s)	870
MluCI	AATT	6 cut(s)	144, 607, 762, 768, 856, 874
MluI	ACGCGT	1 cut(s)	552
Mly113I	GGCGCC	1 cut(s)	5
MlyI	GAGTC	3 cut(s)	161, 705, 749
MmeI	TCCRAC	2 cut(s)	205, 309
MnlI	CCTC	7 cut(s)	170, 327, 449, 517, 541, 862, 895
MroNI	GCCGGC	1 cut(s)	233
MroXI	GAANNNNTTC	1 cut(s)	501
MseI	TTAA	1 cut(s)	750
MspI	CCGG	4 cut(s)	164, 234, 396, 652
MspR9I	CCNGG	2 cut(s)	164, 397
MvnI	CGCG	2 cut(s)	554, 895
MwoI	GCNNNNNNNGC	2 cut(s)	671, 956
NaeI	GCCGGC	1 cut(s)	235
NarI	GGCGCC	1 cut(s)	5
NciI	CCSGG	2 cut(s)	164, 397
NdeII	GATC	2 cut(s)	126, 418
NgoMIV	GCCGGC	1 cut(s)	233
NlaIII	CATG	3 cut(s)	133, 916, 979
NlaIV	GGNNCC	2 cut(s)	6, 420
NspI	RCATGY	1 cut(s)	916
PaeI	GCATGC	1 cut(s)	916
PceI	AGGCCT	1 cut(s)	851
PcsI	WCGNNNNNNNCGW	1 cut(s)	572
PdiI	GCCGGC	1 cut(s)	235
PdmI	GAANNNNTTC	1 cut(s)	501
PfeI	GAWTC	5 cut(s)	30, 87, 198, 346, 797
PflFI	GACNNNGTC	1 cut(s)	38
PflMI	CCANNNNNTGG	1 cut(s)	448
PfoI	TCCNGGA	2 cut(s)	162, 395
PkrI	GCNGC	4 cut(s)	232, 362, 897, 907
PleI	GAGTC	3 cut(s)	161, 704, 749
PluTI	GGCGCC	1 cut(s)	8
PpsI	GAGTC	3 cut(s)	161, 704, 749
Ppu21I	YACGTR	1 cut(s)	390
Psp1406I	AACGTT	1 cut(s)	885
PspN4I	GGNNCC	2 cut(s)	6, 420
PspPI	GGNCC	3 cut(s)	46, 310, 393
PstI	CTGCAG	1 cut(s)	910
PsuI	RGATCY	1 cut(s)	418
PsyI	GACNNNGTC	1 cut(s)	38
RsaI	GTAC	5 cut(s)	119, 188, 296, 704, 815
RsaNI	GTAC	5 cut(s)	118, 187, 295, 703, 814
SalI	GTCGAC	1 cut(s)	430
SaqAI	TTAA	1 cut(s)	750
SatI	GCNGC	4 cut(s)	231, 361, 896, 906
Sau3AI	GATC	2 cut(s)	126, 418
Sau96I	GGNCC	3 cut(s)	46, 310, 393
SchI	GAGTC	3 cut(s)	161, 705, 749
ScrFI	CCNGG	2 cut(s)	164, 397
SduI	GDGCHC	1 cut(s)	870
SfcI	CTRYAG	2 cut(s)	64, 906
SfoI	GGCGCC	1 cut(s)	6
SinI	GGWCC	3 cut(s)	46, 310, 393
SphI	GCATGC	1 cut(s)	916
Sse9I	AATT	6 cut(s)	144, 607, 762, 768, 856, 874
SseBI	AGGCCT	1 cut(s)	851
SsiI	CCGC	5 cut(s)	302, 360, 599, 624, 895
SspDI	GGCGCC	1 cut(s)	4
StuI	AGGCCT	1 cut(s)	851
StyD4I	CCNGG	2 cut(s)	162, 395
TaaI	ACNGT	4 cut(s)	104, 115, 686, 810
TaiI	ACGT	5 cut(s)	39, 392, 569, 581, 888
TasI	AATT	6 cut(s)	144, 607, 762, 768, 856, 874
TatI	WGTACW	2 cut(s)	117, 186
TauI	GCSGC	2 cut(s)	363, 898
TfiI	GAWTC	5 cut(s)	30, 87, 198, 346, 797
Tru1I	TTAA	1 cut(s)	750
Tru9I	TTAA	1 cut(s)	750
TscAI	CASTG	3 cut(s)	79, 120, 966
TseI	GCWGC	2 cut(s)	230, 905
TspDTI	ATGAA	3 cut(s)	369, 510, 964
TspGWI	ACGGA	4 cut(s)	99, 267, 342, 500
TspRI	CASTG	3 cut(s)	79, 120, 966
Tth111I	GACNNNGTC	1 cut(s)	38
Van91I	CCANNNNNTGG	1 cut(s)	448
VpaK11BI	GGWCC	3 cut(s)	46, 310, 393
XapI	RAATTY	4 cut(s)	144, 607, 856, 874
XceI	RCATGY	1 cut(s)	916
XmiI	GTMKAC	1 cut(s)	431
XmnI	GAANNNNTTC	1 cut(s)	501
ZraI	GACGTC	1 cut(s)	37

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.