RLG00000007364

Belongs to the ubiquitin-conjugating enzyme family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
Physical Location & Seq
Reverse (-)
16142030 .. 16143061
1032 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000007364

Sequence Viewer

Length: 1032 bp
ATGGCCGTCTCCGTCAACACCAAACCGTCGTTCAAGCAGTTTGACGTCGTTATGGACCACTCAGACCACCACTACTCCAACAGAAATTGTCGTTTCGTCGACAGTGCGGTCTATAAGAAGATCACGCGCGAGTGGAGAATTTTGGAGAAGGATCTCCCGGAAACCATATACGTGCGCATGTACGAGACACGTGTCGACCTCGTCAGGGCTGTGATTGTCGGAGCAGAAGGCACACCCTACGAGGGTGGACTCTTCTTCTTCGACATCAAGTTCCCGGATAACTATCCGAAAGAACCACCAAAGGTTCATTACCGCTCGCACGGATTGCGGCTTAACCCTAATCTGTACGAGACTGGATATGTTTGCTTGAGCCTACTCAACACGTGGCATGGCCCGGGGTGGGACTCATCCCAATCCACCATCCTCCAAGTTTTGGTGTCGATCCAAGCGCTTGTTCTCAACGACAAGCCTTACTTTAATGAACCGGGTACTGGGTTTTTAAACCGGTGGTTTGGCATGAAGGATGAGTCCCAAAAATACAGTGGGGACGCGTTTATTTCAACATGCAAGTCAACGTTGTATTTGCTCCGAAATCCACCCAAGAATTTTGAGGCTTTCACTGCCGACCATTTTCGTGGAAGAGCGAGTGGGATTCTGAGAGCGTGCAAGGCTTATGCGAAAGTCGGCTATTATTACAGCGAGGAGACTGAGGCAAGCCCGTCTTCGGTTTACCTTGTGAAGCATTCCAGGAAGTTCAAGGCGTCGATGGAGCAGTTGTACCCACAACTGGTTGAAGCTTTTAAAAAGAATGAGGCTTCTCGAAAGAACAATCTGGTCAAGGAATTTACTTCTCGGAAAAACAATCCAGTCAAGAAATTGATGGAGGAGAGGAGTTCGACGAAGTCCGCAGATCAAGTGAAGAAGAAAGCTGTGAAGAAGAAAGCTGAGCTGGCCTTTACTCCGGGCCGGTTATTGTCCGCTGCATTTTTGGTCTCTGTAGCTTTTGTAGTAGTAGTAGTACGTAGAATGTAA

Protein Analysis

344

Amino Acids

39.34

Weight (kDa)

9.58

Isoelectric Point (pI)

36.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UQ_con PF00179 41 - 154 2.5e-24 Ubiquitin-conjugating enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 107
AatII GACGTC 1 cut(s) 48
Acc16I TGCGCA 1 cut(s) 176
AccB7I CCANNNNNTGG 1 cut(s) 433
AccBSI CCGCTC 1 cut(s) 315
AccI GTMKAC 2 cut(s) 99, 195
AccII CGCG 3 cut(s) 127, 129, 551
AciI CCGC 5 cut(s) 107, 313, 328, 906, 978
AclI AACGTT 1 cut(s) 575
AclWI GGATC 2 cut(s) 159, 436
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 3 cut(s) 138, 604, 842
AcvI CACGTG 2 cut(s) 191, 384
AcyI GRCGYC 2 cut(s) 45, 761
AfaI GTAC 5 cut(s) 182, 347, 490, 779, 1020
AfeI AGCGCT 1 cut(s) 450
AfiI CCNNNNNNNGG 7 cut(s) 205, 242, 400, 433, 491, 724, 787
AflIII ACRYGT 4 cut(s) 188, 190, 381, 549
AgeI ACCGGT 1 cut(s) 504
AgsI TTSAA 4 cut(s) 34, 561, 757, 794
AjnI CCWGG 1 cut(s) 746
AjuI GAANNNNNNNTTGG 4 cut(s) 14, 46, 438, 470
AluBI AGCT 5 cut(s) 797, 929, 944, 949, 1001
AluI AGCT 5 cut(s) 797, 929, 944, 949, 1001
Alw26I GTCTC 5 cut(s) 13, 179, 344, 698, 997
AlwI GGATC 2 cut(s) 159, 436
Ama87I CYCGRG 1 cut(s) 394
Aor51HI AGCGCT 1 cut(s) 450
AoxI GGCC 4 cut(s) 3, 391, 951, 964
ApeKI GCWGC 1 cut(s) 980
ApoI RAATTY 3 cut(s) 138, 604, 842
AsiGI ACCGGT 1 cut(s) 504
AspLEI GCGC 3 cut(s) 129, 177, 451
AspS9I GGNCC 3 cut(s) 55, 392, 964
AsuC2I CCSGG 6 cut(s) 158, 275, 395, 396, 486, 963
AvaI CYCGRG 1 cut(s) 394
AvaII GGWCC 1 cut(s) 55
BbrPI CACGTG 2 cut(s) 191, 384
BbsI GAAGAC 1 cut(s) 714
BbvI GCAGC 1 cut(s) 967
BccI CCATC 3 cut(s) 428, 760, 874
BciT130I CCWGG 1 cut(s) 748
BcnI CCSGG 6 cut(s) 158, 275, 395, 396, 486, 963
BcoDI GTCTC 5 cut(s) 13, 179, 344, 698, 997
BfmI CTRYAG 1 cut(s) 996
BfoI RGCGCY 1 cut(s) 452
BisI GCNGC 2 cut(s) 329, 981
BlpI GCTNAGC 1 cut(s) 945
BlsI GCNGC 2 cut(s) 330, 982
Bme1390I CCNGG 7 cut(s) 158, 275, 395, 396, 486, 748, 963
Bme18I GGWCC 1 cut(s) 55
BmeT110I CYCGRG 1 cut(s) 394
BmgT120I GGNCC 3 cut(s) 55, 392, 964
BmrFI CCNGG 7 cut(s) 158, 275, 395, 396, 486, 748, 963
BmrI ACTGGG 1 cut(s) 501
BmuI ACTGGG 1 cut(s) 501
BoxI GACNNNNGTC 1 cut(s) 191
BpiI GAAGAC 1 cut(s) 714
Bpu1102I GCTNAGC 1 cut(s) 945
BpuEI CTTGAG 1 cut(s) 388
BpuMI CCSGG 6 cut(s) 158, 275, 395, 396, 486, 963
BsaAI YACGTR 4 cut(s) 172, 191, 384, 1022
BsaBI GATNNNNATC 1 cut(s) 282
BsaHI GRCGYC 2 cut(s) 45, 761
BsaI GGTCTC 1 cut(s) 997
BsaJI CCNNGG 2 cut(s) 394, 395
BsaWI WCCGGW 1 cut(s) 504
BsaXI ACNNNNNCTCC 4 cut(s) 59, 89, 761, 791
Bsc4I CCNNNNNNNGG 7 cut(s) 205, 242, 400, 433, 491, 724, 787
Bse118I RCCGGY 2 cut(s) 504, 966
Bse1I ACTGG 4 cut(s) 358, 496, 792, 866
Bse8I GATNNNNATC 1 cut(s) 282
BseBI CCWGG 1 cut(s) 748
BseDI CCNNGG 2 cut(s) 394, 395
BseGI GGATG 3 cut(s) 407, 420, 529
BseJI GATNNNNATC 1 cut(s) 282
BseLI CCNNNNNNNGG 7 cut(s) 205, 242, 400, 433, 491, 724, 787
BseMII CTCAG 4 cut(s) 75, 647, 699, 936
BseNI ACTGG 4 cut(s) 358, 496, 792, 866
BseRI GAGGAG 3 cut(s) 716, 899, 904
BseXI GCAGC 1 cut(s) 967
Bsh1236I CGCG 3 cut(s) 127, 129, 551
BshFI GGCC 4 cut(s) 5, 393, 953, 966
BshTI ACCGGT 1 cut(s) 504
BsiHKCI CYCGRG 1 cut(s) 394
BsiSI CCGG 7 cut(s) 158, 275, 395, 485, 505, 962, 967
BslFI GGGAC 3 cut(s) 416, 514, 560
BslI CCNNNNNNNGG 7 cut(s) 205, 242, 400, 433, 491, 724, 787
BsmAI GTCTC 5 cut(s) 13, 179, 344, 698, 997
BsmBI CGTCTC 1 cut(s) 13
BsmFI GGGAC 3 cut(s) 416, 514, 560
BsmI GAATGC 1 cut(s) 742
BsnI GGCC 4 cut(s) 5, 393, 953, 966
Bso31I GGTCTC 1 cut(s) 997
BsoBI CYCGRG 1 cut(s) 394
Bsp143I GATC 4 cut(s) 120, 151, 441, 910
Bsp1720I GCTNAGC 1 cut(s) 945
BspACI CCGC 5 cut(s) 107, 313, 328, 906, 978
BspANI GGCC 4 cut(s) 5, 393, 953, 966
BspCNI CTCAG 4 cut(s) 74, 648, 700, 937
BspFNI CGCG 3 cut(s) 127, 129, 551
BspPI GGATC 2 cut(s) 159, 436
BspQI GCTCTTC 1 cut(s) 634
BspTNI GGTCTC 1 cut(s) 997
BsrBI CCGCTC 1 cut(s) 315
BsrFI RCCGGY 2 cut(s) 504, 966
BsrI ACTGG 4 cut(s) 358, 496, 792, 866
BssAI RCCGGY 2 cut(s) 504, 966
BssECI CCNNGG 2 cut(s) 394, 395
BssMI GATC 4 cut(s) 120, 151, 441, 910
BssNI GRCGYC 2 cut(s) 45, 761
Bst2UI CCWGG 1 cut(s) 748
Bst4CI ACNGT 3 cut(s) 27, 104, 542
Bst6I CTCTTC 2 cut(s) 257, 634
BstACI GRCGYC 2 cut(s) 45, 761
BstAPI GCANNNNNTGC 1 cut(s) 325
BstBAI YACGTR 4 cut(s) 172, 191, 384, 1022
BstC8I GCNNGC 4 cut(s) 317, 664, 715, 951
BstDEI CTNAG 4 cut(s) 61, 656, 708, 945
BstF5I GGATG 3 cut(s) 407, 420, 529
BstFNI CGCG 3 cut(s) 127, 129, 551
BstH2I RGCGCY 1 cut(s) 452
BstHHI GCGC 3 cut(s) 129, 177, 451
BstKTI GATC 4 cut(s) 123, 154, 444, 913
BstMAI GTCTC 5 cut(s) 13, 179, 344, 698, 997
BstMBI GATC 4 cut(s) 120, 151, 441, 910
BstMWI GCNNNNNNNGC 4 cut(s) 325, 620, 668, 950
BstNI CCWGG 1 cut(s) 748
BstNSI RCATGY 2 cut(s) 181, 567
BstPAI GACNNNNGTC 1 cut(s) 191
BstSCI CCNGG 7 cut(s) 156, 273, 393, 394, 484, 746, 961
BstSFI CTRYAG 1 cut(s) 996
BstSNI TACGTA 1 cut(s) 1022
BstUI CGCG 3 cut(s) 127, 129, 551
BstV1I GCAGC 1 cut(s) 967
BstV2I GAAGAC 1 cut(s) 714
BstX2I RGATCY 1 cut(s) 151
BstXI CCANNNNNNTGG 1 cut(s) 635
BstYI RGATCY 1 cut(s) 151
BsuRI GGCC 4 cut(s) 5, 393, 953, 966
BtsCI GGATG 3 cut(s) 407, 420, 529
BtsI GCAGTG 1 cut(s) 618
BtsIMutI CAGTG 3 cut(s) 109, 547, 618
Cac8I GCNNGC 4 cut(s) 317, 664, 715, 951
CfoI GCGC 3 cut(s) 129, 177, 451
Cfr10I RCCGGY 2 cut(s) 504, 966
Cfr13I GGNCC 3 cut(s) 55, 392, 964
Cfr9I CCCGGG 1 cut(s) 394
CseI GACGC 2 cut(s) 557, 750
Csp6I GTAC 5 cut(s) 181, 346, 489, 778, 1019
CspAI ACCGGT 1 cut(s) 504
CviAII CATG 4 cut(s) 178, 389, 517, 564
CviQI GTAC 5 cut(s) 181, 346, 489, 778, 1019
DdeI CTNAG 4 cut(s) 61, 656, 708, 945
DpnI GATC 4 cut(s) 122, 153, 443, 912
DpnII GATC 4 cut(s) 120, 151, 441, 910
DraI TTTAAA 2 cut(s) 501, 802
DrdI GACNNNNNNGTC 1 cut(s) 107
DseDI GACNNNNNNGTC 1 cut(s) 107
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 2 cut(s) 257, 634
EarI CTCTTC 2 cut(s) 257, 634
Eco105I TACGTA 1 cut(s) 1022
Eco31I GGTCTC 1 cut(s) 997
Eco47I GGWCC 1 cut(s) 55
Eco47III AGCGCT 1 cut(s) 450
Eco72I CACGTG 2 cut(s) 191, 384
Eco88I CYCGRG 1 cut(s) 394
EcoRII CCWGG 1 cut(s) 746
Esp3I CGTCTC 1 cut(s) 13
FaeI CATG 4 cut(s) 181, 392, 520, 567
FalI AAGNNNNNCTT 4 cut(s) 458, 490, 706, 738
FaqI GGGAC 3 cut(s) 416, 514, 560
FatI CATG 4 cut(s) 177, 388, 516, 563
FblI GTMKAC 2 cut(s) 99, 195
Fnu4HI GCNGC 2 cut(s) 329, 981
FokI GGATG 3 cut(s) 394, 407, 536
Fsp4HI GCNGC 2 cut(s) 329, 981
FspAI RTGCGCAY 1 cut(s) 176
FspI TGCGCA 1 cut(s) 176
GlaI GCGC 3 cut(s) 128, 176, 450
GluI GCNGC 2 cut(s) 329, 981
HaeII RGCGCY 1 cut(s) 452
HaeIII GGCC 4 cut(s) 5, 393, 953, 966
HapII CCGG 7 cut(s) 158, 275, 395, 485, 505, 962, 967
HgaI GACGC 2 cut(s) 557, 750
HhaI GCGC 3 cut(s) 129, 177, 451
Hin1I GRCGYC 2 cut(s) 45, 761
Hin1II CATG 4 cut(s) 181, 392, 520, 567
Hin6I GCGC 3 cut(s) 127, 175, 449
HinP1I GCGC 3 cut(s) 127, 175, 449
HincII GTYRAC 4 cut(s) 16, 100, 196, 573
HindII GTYRAC 4 cut(s) 16, 100, 196, 573
HindIII AAGCTT 1 cut(s) 795
HinfI GANTC 4 cut(s) 249, 404, 527, 652
HpaII CCGG 7 cut(s) 158, 275, 395, 485, 505, 962, 967
Hpy166II GTNNAC 6 cut(s) 16, 100, 196, 248, 573, 730
Hpy188I TCNGA 6 cut(s) 64, 221, 288, 590, 657, 855
Hpy188III TCNNGA 2 cut(s) 819, 871
Hpy8I GTNNAC 6 cut(s) 16, 100, 196, 248, 573, 730
Hpy99I CGWCG 5 cut(s) 31, 50, 101, 766, 901
HpyAV CCTTC 3 cut(s) 142, 221, 514
HpyCH4III ACNGT 3 cut(s) 27, 104, 542
HpyCH4IV ACGT 6 cut(s) 45, 171, 190, 383, 575, 1021
HpyCH4V TGCA 3 cut(s) 567, 666, 983
HpyF10VI GCNNNNNNNGC 4 cut(s) 325, 620, 668, 950
HpyF3I CTNAG 4 cut(s) 61, 656, 708, 945
HpySE526I ACGT 6 cut(s) 45, 171, 190, 383, 575, 1021
Hsp92I GRCGYC 2 cut(s) 45, 761
Hsp92II CATG 4 cut(s) 181, 392, 520, 567
HspAI GCGC 3 cut(s) 127, 175, 449
Kzo9I GATC 4 cut(s) 120, 151, 441, 910
LguI GCTCTTC 1 cut(s) 634
LmnI GCTCC 3 cut(s) 221, 591, 769
Lsp1109I GCAGC 1 cut(s) 967
MaeII ACGT 6 cut(s) 45, 171, 190, 383, 575, 1021
MalI GATC 4 cut(s) 122, 153, 443, 912
MbiI CCGCTC 1 cut(s) 315
MboI GATC 4 cut(s) 120, 151, 441, 910
MflI RGATCY 1 cut(s) 151
MluCI AATT 5 cut(s) 85, 138, 604, 842, 875
MluI ACGCGT 1 cut(s) 549
MlyI GAGTC 3 cut(s) 243, 398, 536
MmeI TCCRAC 2 cut(s) 102, 199
MnlI CCTC 9 cut(s) 209, 235, 434, 604, 694, 703, 805, 877, 882
MseI TTAA 4 cut(s) 333, 477, 500, 801
MslI CAYNNNNRTG 2 cut(s) 170, 633
MspA1I CMGCKG 1 cut(s) 980
MspI CCGG 7 cut(s) 158, 275, 395, 485, 505, 962, 967
MspR9I CCNGG 7 cut(s) 158, 275, 395, 396, 486, 748, 963
Mva1269I GAATGC 1 cut(s) 742
MvaI CCWGG 1 cut(s) 748
MvnI CGCG 3 cut(s) 127, 129, 551
MwoI GCNNNNNNNGC 4 cut(s) 325, 620, 668, 950
NciI CCSGG 6 cut(s) 158, 275, 395, 396, 486, 963
NdeII GATC 4 cut(s) 120, 151, 441, 910
NlaIII CATG 4 cut(s) 181, 392, 520, 567
NsbI TGCGCA 1 cut(s) 176
NspI RCATGY 2 cut(s) 181, 567
PciSI GCTCTTC 1 cut(s) 634
PctI GAATGC 1 cut(s) 742
PfeI GAWTC 1 cut(s) 652
PflFI GACNNNGTC 2 cut(s) 200, 901
PflMI CCANNNNNTGG 1 cut(s) 433
PfoI TCCNGGA 3 cut(s) 156, 273, 746
PinAI ACCGGT 1 cut(s) 504
PkrI GCNGC 2 cut(s) 330, 982
PleI GAGTC 3 cut(s) 243, 398, 535
PmaCI CACGTG 2 cut(s) 191, 384
PmlI CACGTG 2 cut(s) 191, 384
PpsI GAGTC 3 cut(s) 243, 398, 535
Ppu21I YACGTR 4 cut(s) 172, 191, 384, 1022
PshAI GACNNNNGTC 1 cut(s) 191
Psp1406I AACGTT 1 cut(s) 575
Psp6I CCWGG 1 cut(s) 746
PspCI CACGTG 2 cut(s) 191, 384
PspGI CCWGG 1 cut(s) 746
PspPI GGNCC 3 cut(s) 55, 392, 964
PsuI RGATCY 1 cut(s) 151
PsyI GACNNNGTC 2 cut(s) 200, 901
RsaI GTAC 5 cut(s) 182, 347, 490, 779, 1020
RsaNI GTAC 5 cut(s) 181, 346, 489, 778, 1019
RseI CAYNNNNRTG 2 cut(s) 170, 633
SalI GTCGAC 2 cut(s) 98, 194
SapI GCTCTTC 1 cut(s) 634
SaqAI TTAA 4 cut(s) 333, 477, 500, 801
SatI GCNGC 2 cut(s) 329, 981
Sau3AI GATC 4 cut(s) 120, 151, 441, 910
Sau96I GGNCC 3 cut(s) 55, 392, 964
SchI GAGTC 3 cut(s) 243, 398, 536
ScrFI CCNGG 7 cut(s) 158, 275, 395, 396, 486, 748, 963
SfcI CTRYAG 1 cut(s) 996
SinI GGWCC 1 cut(s) 55
SmaI CCCGGG 1 cut(s) 396
SmiMI CAYNNNNRTG 2 cut(s) 170, 633
SmlI CTYRAG 1 cut(s) 367
SmoI CTYRAG 1 cut(s) 367
SnaBI TACGTA 1 cut(s) 1022
Sse9I AATT 5 cut(s) 85, 138, 604, 842, 875
SsiI CCGC 5 cut(s) 107, 313, 328, 906, 978
StyD4I CCNGG 7 cut(s) 156, 273, 393, 394, 484, 746, 961
TaaI ACNGT 3 cut(s) 27, 104, 542
TaiI ACGT 6 cut(s) 48, 174, 193, 386, 578, 1024
TaqI TCGA 7 cut(s) 99, 195, 261, 440, 764, 820, 896
TasI AATT 5 cut(s) 85, 138, 604, 842, 875
TauI GCSGC 1 cut(s) 331
TfiI GAWTC 1 cut(s) 652
Tru1I TTAA 4 cut(s) 333, 477, 500, 801
Tru9I TTAA 4 cut(s) 333, 477, 500, 801
TscAI CASTG 3 cut(s) 109, 547, 625
TseI GCWGC 1 cut(s) 980
TspDTI ATGAA 3 cut(s) 296, 495, 533
TspGWI ACGGA 1 cut(s) 336
TspMI CCCGGG 1 cut(s) 394
TspRI CASTG 3 cut(s) 109, 547, 625
Tth111I GACNNNGTC 2 cut(s) 200, 901
Van91I CCANNNNNTGG 1 cut(s) 433
VpaK11BI GGWCC 1 cut(s) 55
XapI RAATTY 3 cut(s) 138, 604, 842
XceI RCATGY 2 cut(s) 181, 567
XcmI CCANNNNNNNNNTGG 1 cut(s) 539
XmaI CCCGGG 1 cut(s) 394
XmiI GTMKAC 2 cut(s) 99, 195
ZraI GACGTC 1 cut(s) 46
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.