Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0000808

Physical Location & Seq

Genomic Coordinates Forward (+)

48019343 .. 48020355

Gene Structure 1013 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G022580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGGCGCCCTTAGTGGAGAGCTTCCACAGATTCGACGTCGTCTCGGACCATTCAGACCACCACTACAGCAACACTGACGGGAACGGAAACAGTTTCACCTACTGTGGAAGCACAGTGTACAAGAAGATCATGCGCGAGTGGAAAATTCTAAGTAAGCACCTCCCGGACTCGACCTATGTGCGAGTGTACAACACTCGAATCGACCTACTGAGAGCCGTCATTGTTGGAGCAGCCAGCACTCCTTACCACGACGGATTGTTCTTCTTCGACATCAAGTTCCCGTCCAACTACCCGTACCAACCGCCACAGGTCCATTACCATTCCCACGGATTGAGGCTCAATCCGAATCTATATGAAAGCGGCAAGGTCTGTCTAAGCTTGCTCAATACGTGGTCCGGGAAAAAGAAAGAGATGTGGGATCCAAATCAGTCGACTATCCTCCAAGTGCTGGTGTCTATACAAGGACTGGTTCTGAACGAAAAGCCCTTCTATAATGAACCCTTTCGTCTCCGTATCTTTCAGGAAGAGAACTCCCGTCGTTACAATGAGGACGCGTTTATCAAAACGTGCAAGACGACGTTGTATTTGCTCCAAAAACCGCCCAAGAATTTTGAGCTTTTCACCGCCGACCATTTTCGACAGAGAGCAAACCGGATACTGAGAGCTTGTAACGCTTACACTAACAGTCGTGTGGGAGTCGGGCACTACAGAGATGACAATGAAAATGTAACTAAGGATGACACTAAAGTTAAGGACTCTGCAATTTCAGTTCACCCTGGCTTAGCTAGTGAGCTAGTCTATACCGTCTACGTGCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0031625 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044424 GO:0044444 GO:0044464 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

272

Amino Acids

31.55

Weight (kDa)

8.87

Isoelectric Point (pI)

32.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	43 - 176	7e-25	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000808)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g01260 FvH4_4g19890 FvH4_4g19900 FvH4_4g19910 FvH4_4g23111
malus_domestica	MD16G1152700.v1.1
prunus_persica	Prupe.1G115900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0415111 RchiOBHm_Chr4g0421801 RchiOBHm_Chr4g0425521 RchiOBHm_Chr4g0425551
rosa_laevigata	RLG00000007355 RLG00000007357 RLG00000007358 RLG00000007360 RLG00000007361 RLG00000007364 RLG00000007366 RLG00000007640 RLG00000008097 RLG00000022500
rosa_multiflora	Rmu_co8278857.1_g000001 Rmu_sc0000635.1_g000001 Rmu_sc0000709.1_g000009 Rmu_sc0001900.1_g000008 Rmu_sc0001900.1_g000009 Rmu_sc0003748.1_g000014 Rmu_sc0008440.1_g000003 Rmu_sc0010306.1_g000005 Rmu_sc0012856.1_g000010 Rmu_sc0032188.1_g000001
rosa_roxburghii	Rroxscaffold_5G00364100 Rroxscaffold_5G00367460 Rroxscaffold_5G00367480 Rroxscaffold_5G00367490 Rroxscaffold_5G00367510 Rroxscaffold_5G00371110
rosa_rugosa	Rorug04G0176300 Rorug04G0203700 Rorug04G0203800 Rorug04G0203800 Rorug04G0203900 Rorug06G0289400
rosa_samantha	Rh4AG192100 Rh4AG235200 Rh4AG236000 Rh4AG260700 Rh4AG260900 Rh4BG190000 Rh4BG238700 Rh4BG266400 Rh4BG266600 Rh4BG266700 Rh4CG202900 Rh4CG250700 Rh4CG277700 Rh4CG277900 Rh4CG278000 Rh4DG235300 Rh4DG262700 Rh4DG262900 Rh4DG263100 Rh6BG409300 Rh6DG401700
rosa_wichuraiana	Rw4G016340 Rw4G019840 Rw4G022570 Rw4G022580 Rw4G022590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	39
AccB1I	GGYRCC	1 cut(s)	4
AccB7I	CCANNNNNTGG	1 cut(s)	448
AccI	GTMKAC	2 cut(s)	431, 807
AccII	CGCG	2 cut(s)	135, 554
AciI	CCGC	4 cut(s)	302, 360, 599, 624
AclWI	GGATC	2 cut(s)	413, 426
AcsI	RAATTY	2 cut(s)	144, 607
AcyI	GRCGYC	2 cut(s)	5, 36
AfaI	GTAC	3 cut(s)	119, 188, 296
AfiI	CCNNNNNNNGG	1 cut(s)	448
AflIII	ACRYGT	1 cut(s)	552
AjnI	CCWGG	1 cut(s)	775
AluBI	AGCT	6 cut(s)	21, 378, 616, 665, 785, 793
AluI	AGCT	6 cut(s)	21, 378, 616, 665, 785, 793
Alw26I	GTCTC	2 cut(s)	46, 512
AlwI	GGATC	2 cut(s)	413, 426
ApeKI	GCWGC	1 cut(s)	230
ApoI	RAATTY	2 cut(s)	144, 607
ArsI	GACNNNNNNTTYG	2 cut(s)	568, 600
Asp700I	GAANNNNTTC	1 cut(s)	501
AspLEI	GCGC	2 cut(s)	7, 135
AspS9I	GGNCC	3 cut(s)	46, 310, 393
AsuC2I	CCSGG	2 cut(s)	164, 397
AsuHPI	GGTGA	3 cut(s)	88, 613, 764
AvaII	GGWCC	3 cut(s)	46, 310, 393
BaeGI	GKGCMC	1 cut(s)	705
BamHI	GGATCC	1 cut(s)	418
BanI	GGYRCC	1 cut(s)	4
BbvI	GCAGC	1 cut(s)	242
BceAI	ACGGC	1 cut(s)	200
BcgI	CGANNNNNNTGC	2 cut(s)	160, 194
BciT130I	CCWGG	1 cut(s)	777
BciVI	GTATCC	1 cut(s)	648
BcnI	CCSGG	2 cut(s)	164, 397
BcoDI	GTCTC	2 cut(s)	46, 512
BfaI	CTAG	2 cut(s)	786, 794
BfmI	CTRYAG	2 cut(s)	64, 706
BfoI	RGCGCY	1 cut(s)	8
BfuI	GTATCC	1 cut(s)	648
BisI	GCNGC	2 cut(s)	231, 361
BlpI	GCTNAGC	1 cut(s)	781
BlsI	GCNGC	2 cut(s)	232, 362
Bme1390I	CCNGG	3 cut(s)	164, 397, 777
Bme18I	GGWCC	3 cut(s)	46, 310, 393
BmgT120I	GGNCC	3 cut(s)	46, 310, 393
BmiI	GGNNCC	2 cut(s)	6, 420
BmrFI	CCNGG	3 cut(s)	164, 397, 777
Bpu1102I	GCTNAGC	1 cut(s)	781
BpuMI	CCSGG	2 cut(s)	164, 397
BsaAI	YACGTR	2 cut(s)	390, 811
BsaBI	GATNNNNATC	1 cut(s)	423
BsaHI	GRCGYC	2 cut(s)	5, 36
BsaJI	CCNNGG	2 cut(s)	325, 775
BsaWI	WCCGGW	1 cut(s)	651
Bsc4I	CCNNNNNNNGG	1 cut(s)	448
Bse1I	ACTGG	1 cut(s)	471
Bse8I	GATNNNNATC	1 cut(s)	423
BseBI	CCWGG	1 cut(s)	777
BseDI	CCNNGG	2 cut(s)	325, 775
BseGI	GGATG	1 cut(s)	742
BseJI	GATNNNNATC	1 cut(s)	423
BseLI	CCNNNNNNNGG	1 cut(s)	448
BseMII	CTCAG	2 cut(s)	200, 650
BseNI	ACTGG	1 cut(s)	471
BseSI	GKGCMC	1 cut(s)	705
BseXI	GCAGC	1 cut(s)	242
Bsh1236I	CGCG	2 cut(s)	135, 554
BshNI	GGYRCC	1 cut(s)	4
BsiSI	CCGG	3 cut(s)	164, 396, 652
BslI	CCNNNNNNNGG	1 cut(s)	448
BsmAI	GTCTC	2 cut(s)	46, 512
BsmBI	CGTCTC	2 cut(s)	46, 512
Bsp1286I	GDGCHC	1 cut(s)	705
Bsp1407I	TGTACA	2 cut(s)	117, 186
Bsp143I	GATC	2 cut(s)	126, 418
Bsp1720I	GCTNAGC	1 cut(s)	781
BspACI	CCGC	4 cut(s)	302, 360, 599, 624
BspCNI	CTCAG	2 cut(s)	201, 651
BspFNI	CGCG	2 cut(s)	135, 554
BspLI	GGNNCC	2 cut(s)	6, 420
BspPI	GGATC	2 cut(s)	413, 426
BspT107I	GGYRCC	1 cut(s)	4
BsrGI	TGTACA	2 cut(s)	117, 186
BsrI	ACTGG	1 cut(s)	471
BssECI	CCNNGG	2 cut(s)	325, 775
BssMI	GATC	2 cut(s)	126, 418
BssNI	GRCGYC	2 cut(s)	5, 36
Bst2UI	CCWGG	1 cut(s)	777
Bst4CI	ACNGT	5 cut(s)	92, 104, 115, 686, 805
Bst6I	CTCTTC	1 cut(s)	519
BstACI	GRCGYC	2 cut(s)	5, 36
BstAUI	TGTACA	2 cut(s)	117, 186
BstBAI	YACGTR	2 cut(s)	390, 811
BstC8I	GCNNGC	2 cut(s)	235, 380
BstDEI	CTNAG	7 cut(s)	10, 149, 209, 374, 659, 732, 781
BstDSI	CCRYGG	1 cut(s)	325
BstF5I	GGATG	1 cut(s)	742
BstFNI	CGCG	2 cut(s)	135, 554
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	2 cut(s)	7, 135
BstKTI	GATC	2 cut(s)	129, 421
BstMAI	GTCTC	2 cut(s)	46, 512
BstMBI	GATC	2 cut(s)	126, 418
BstMWI	GCNNNNNNNGC	1 cut(s)	671
BstNI	CCWGG	1 cut(s)	777
BstSCI	CCNGG	3 cut(s)	162, 395, 775
BstSFI	CTRYAG	2 cut(s)	64, 706
BstSLI	GKGCMC	1 cut(s)	705
BstUI	CGCG	2 cut(s)	135, 554
BstV1I	GCAGC	1 cut(s)	242
BstX2I	RGATCY	1 cut(s)	418
BstYI	RGATCY	1 cut(s)	418
BsuI	GTATCC	1 cut(s)	648
BtgI	CCRYGG	1 cut(s)	325
BtsCI	GGATG	1 cut(s)	742
BtsIMutI	CAGTG	2 cut(s)	72, 120
Cac8I	GCNNGC	2 cut(s)	235, 380
CfoI	GCGC	2 cut(s)	7, 135
Cfr13I	GGNCC	3 cut(s)	46, 310, 393
CseI	GACGC	1 cut(s)	560
Csp6I	GTAC	3 cut(s)	118, 187, 295
CviAII	CATG	1 cut(s)	130
CviQI	GTAC	3 cut(s)	118, 187, 295
DdeI	CTNAG	7 cut(s)	10, 149, 209, 374, 659, 732, 781
DinI	GGCGCC	1 cut(s)	6
DpnI	GATC	2 cut(s)	128, 420
DpnII	GATC	2 cut(s)	126, 418
Eam1104I	CTCTTC	1 cut(s)	519
EarI	CTCTTC	1 cut(s)	519
Eco47I	GGWCC	3 cut(s)	46, 310, 393
EcoRII	CCWGG	1 cut(s)	775
EgeI	GGCGCC	1 cut(s)	6
EheI	GGCGCC	1 cut(s)	6
Esp3I	CGTCTC	2 cut(s)	46, 512
FaeI	CATG	1 cut(s)	133
FaiI	YATR	7 cut(s)	131, 177, 352, 354, 458, 492, 801
FatI	CATG	1 cut(s)	129
FblI	GTMKAC	2 cut(s)	431, 807
Fnu4HI	GCNGC	2 cut(s)	231, 361
FokI	GGATG	1 cut(s)	749
Fsp4HI	GCNGC	2 cut(s)	231, 361
FspBI	CTAG	2 cut(s)	786, 794
GlaI	GCGC	2 cut(s)	6, 134
GluI	GCNGC	2 cut(s)	231, 361
HaeII	RGCGCY	1 cut(s)	8
HapII	CCGG	3 cut(s)	164, 396, 652
HgaI	GACGC	1 cut(s)	560
HhaI	GCGC	2 cut(s)	7, 135
Hin1I	GRCGYC	2 cut(s)	5, 36
Hin1II	CATG	1 cut(s)	133
Hin6I	GCGC	2 cut(s)	5, 133
HinP1I	GCGC	2 cut(s)	5, 133
HincII	GTYRAC	1 cut(s)	432
HindII	GTYRAC	1 cut(s)	432
HindIII	AAGCTT	1 cut(s)	376
HinfI	GANTC	6 cut(s)	30, 167, 198, 346, 696, 755
HpaII	CCGG	3 cut(s)	164, 396, 652
HphI	GGTGA	3 cut(s)	88, 613, 764
Hpy166II	GTNNAC	5 cut(s)	118, 187, 432, 772, 808
Hpy188I	TCNGA	4 cut(s)	46, 55, 345, 474
Hpy188III	TCNNGA	1 cut(s)	521
Hpy8I	GTNNAC	5 cut(s)	118, 187, 432, 772, 808
Hpy99I	CGWCG	5 cut(s)	38, 41, 254, 540, 580
HpyAV	CCTTC	1 cut(s)	496
HpyCH4III	ACNGT	5 cut(s)	92, 104, 115, 686, 805
HpyCH4IV	ACGT	5 cut(s)	36, 389, 566, 578, 810
HpyCH4V	TGCA	2 cut(s)	570, 761
HpyF10VI	GCNNNNNNNGC	1 cut(s)	671
HpyF3I	CTNAG	7 cut(s)	10, 149, 209, 374, 659, 732, 781
HpySE526I	ACGT	5 cut(s)	36, 389, 566, 578, 810
Hsp92I	GRCGYC	2 cut(s)	5, 36
Hsp92II	CATG	1 cut(s)	133
HspAI	GCGC	2 cut(s)	5, 133
KasI	GGCGCC	1 cut(s)	4
Kzo9I	GATC	2 cut(s)	126, 418
LmnI	GCTCC	2 cut(s)	227, 594
Lsp1109I	GCAGC	1 cut(s)	242
MaeI	CTAG	2 cut(s)	786, 794
MaeII	ACGT	5 cut(s)	36, 389, 566, 578, 810
MaeIII	GTNAC	3 cut(s)	539, 668, 727
MalI	GATC	2 cut(s)	128, 420
MboI	GATC	2 cut(s)	126, 418
MboII	GAAGA	4 cut(s)	136, 253, 256, 536
MflI	RGATCY	1 cut(s)	418
MhlI	GDGCHC	1 cut(s)	705
MluCI	AATT	3 cut(s)	144, 607, 762
MluI	ACGCGT	1 cut(s)	552
Mly113I	GGCGCC	1 cut(s)	5
MlyI	GAGTC	3 cut(s)	161, 705, 749
MmeI	TCCRAC	2 cut(s)	205, 309
MnlI	CCTC	4 cut(s)	170, 327, 449, 541
MroXI	GAANNNNTTC	1 cut(s)	501
MseI	TTAA	1 cut(s)	750
MspI	CCGG	3 cut(s)	164, 396, 652
MspR9I	CCNGG	3 cut(s)	164, 397, 777
MvaI	CCWGG	1 cut(s)	777
MvnI	CGCG	2 cut(s)	135, 554
MwoI	GCNNNNNNNGC	1 cut(s)	671
NarI	GGCGCC	1 cut(s)	5
NciI	CCSGG	2 cut(s)	164, 397
NdeII	GATC	2 cut(s)	126, 418
NlaIII	CATG	1 cut(s)	133
NlaIV	GGNNCC	2 cut(s)	6, 420
PcsI	WCGNNNNNNNCGW	1 cut(s)	572
PdmI	GAANNNNTTC	1 cut(s)	501
PfeI	GAWTC	3 cut(s)	30, 198, 346
PflFI	GACNNNGTC	1 cut(s)	38
PflMI	CCANNNNNTGG	1 cut(s)	448
PfoI	TCCNGGA	2 cut(s)	162, 395
PkrI	GCNGC	2 cut(s)	232, 362
PleI	GAGTC	3 cut(s)	161, 704, 749
PluTI	GGCGCC	1 cut(s)	8
PpsI	GAGTC	3 cut(s)	161, 704, 749
Ppu21I	YACGTR	2 cut(s)	390, 811
Psp6I	CCWGG	1 cut(s)	775
PspGI	CCWGG	1 cut(s)	775
PspN4I	GGNNCC	2 cut(s)	6, 420
PspPI	GGNCC	3 cut(s)	46, 310, 393
PsuI	RGATCY	1 cut(s)	418
PsyI	GACNNNGTC	1 cut(s)	38
RsaI	GTAC	3 cut(s)	119, 188, 296
RsaNI	GTAC	3 cut(s)	118, 187, 295
SalI	GTCGAC	1 cut(s)	430
SaqAI	TTAA	1 cut(s)	750
SatI	GCNGC	2 cut(s)	231, 361
Sau3AI	GATC	2 cut(s)	126, 418
Sau96I	GGNCC	3 cut(s)	46, 310, 393
SchI	GAGTC	3 cut(s)	161, 705, 749
ScrFI	CCNGG	3 cut(s)	164, 397, 777
SduI	GDGCHC	1 cut(s)	705
SfcI	CTRYAG	2 cut(s)	64, 706
SfoI	GGCGCC	1 cut(s)	6
SinI	GGWCC	3 cut(s)	46, 310, 393
Sse9I	AATT	3 cut(s)	144, 607, 762
SsiI	CCGC	4 cut(s)	302, 360, 599, 624
SspDI	GGCGCC	1 cut(s)	4
SspMI	CTAG	2 cut(s)	786, 794
StyD4I	CCNGG	3 cut(s)	162, 395, 775
TaaI	ACNGT	5 cut(s)	92, 104, 115, 686, 805
TaiI	ACGT	5 cut(s)	39, 392, 569, 581, 813
TaqI	TCGA	7 cut(s)	33, 170, 196, 201, 267, 431, 637
TasI	AATT	3 cut(s)	144, 607, 762
TatI	WGTACW	2 cut(s)	117, 186
TauI	GCSGC	1 cut(s)	363
TfiI	GAWTC	3 cut(s)	30, 198, 346
Tru1I	TTAA	1 cut(s)	750
Tru9I	TTAA	1 cut(s)	750
TscAI	CASTG	2 cut(s)	79, 120
TseI	GCWGC	1 cut(s)	230
TspDTI	ATGAA	3 cut(s)	369, 510, 735
TspGWI	ACGGA	4 cut(s)	99, 267, 342, 500
TspRI	CASTG	2 cut(s)	79, 120
Tth111I	GACNNNGTC	1 cut(s)	38
Van91I	CCANNNNNTGG	1 cut(s)	448
VpaK11BI	GGWCC	3 cut(s)	46, 310, 393
XapI	RAATTY	2 cut(s)	144, 607
XmiI	GTMKAC	2 cut(s)	431, 807
XmnI	GAANNNNTTC	1 cut(s)	501
XspI	CTAG	2 cut(s)	786, 794
ZraI	GACGTC	1 cut(s)	37

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.