Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010306.1

Orthogroup ID

OG0000808

Physical Location & Seq

Genomic Coordinates Reverse (-)

34945 .. 35991

Gene Structure 1047 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010306.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

atggaccctgcgatgaccaaaccaaacttcaagcaattcgaaatcgtttccgatcactcagaccaccactacagtaacgaggaaaagcaagggcaggggaagaacaataaaagcggagatggagattgtttcatcaacagtggcagtactgtctacaagaagatcatgcgtgagtggaaaattttggagaatggtctcccggacacaatctatgtgcgcgtgtacgagatgcgcgtcgacttgatgagggcagtgattgtcggagcagccggcaccccttaccacgatgcgctctttttctttgacatcaagtttccgtctaattatccgaaccgcccgcctcaagtccattaccggtcgcacgggttaagtctgaacccaaacctatgggtgtccggacatatctgcttgagccttctcaacacgtggattggttgggggaaggagcggtgggttccatctcagtcgacgattctccaagttcttgtgtcaattcaggcgctcgttctcaatgccaagccctacttgaacgaattgggtagaggttttcttgacagggatgcgatgtcatacttttataacgaggaggcttttatagaaacatgcaagtcgacagtgtatttgctccgaaatcctccaaagcatttcgagggattcattgctggacatttttgtagtaaagcacgtgacatattgagagcgtacatcgcttatgcaaatgggcgcgtgcgtataggacaccacaacaatgacatggaggtggcatgccttactgcggaaaataattcacgttaccatgttaccaagacgttccaggacgggatggagcagctgtacccagtactcgtcgaggctttcaaaaagaatgggttttctgcagaagattgggtggaggaggacttcattgtggagaggaaacccttggagcccttttcatcacgcttgcgtaagtgttttttagcttgtctacattgtttaccatggtcagctaatgatgatgatgatcgtgatgagcctttattgacgggcaaaggcgaattagattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0031625 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044424 GO:0044444 GO:0044464 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

348

Amino Acids

39.99

Weight (kDa)

6.12

Isoelectric Point (pI)

38.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000808)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g01260 FvH4_4g19890 FvH4_4g19900 FvH4_4g19910 FvH4_4g23111
malus_domestica	MD16G1152700.v1.1
prunus_persica	Prupe.1G115900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0415111 RchiOBHm_Chr4g0421801 RchiOBHm_Chr4g0425521 RchiOBHm_Chr4g0425551
rosa_laevigata	RLG00000007355 RLG00000007357 RLG00000007358 RLG00000007360 RLG00000007361 RLG00000007364 RLG00000007366 RLG00000007640 RLG00000008097 RLG00000022500
rosa_multiflora	Rmu_co8278857.1_g000001 Rmu_sc0000635.1_g000001 Rmu_sc0000709.1_g000009 Rmu_sc0001900.1_g000008 Rmu_sc0001900.1_g000009 Rmu_sc0003748.1_g000014 Rmu_sc0008440.1_g000003 Rmu_sc0010306.1_g000005 Rmu_sc0012856.1_g000010 Rmu_sc0032188.1_g000001
rosa_roxburghii	Rroxscaffold_5G00364100 Rroxscaffold_5G00367460 Rroxscaffold_5G00367480 Rroxscaffold_5G00367490 Rroxscaffold_5G00367510 Rroxscaffold_5G00371110
rosa_rugosa	Rorug04G0176300 Rorug04G0203700 Rorug04G0203800 Rorug04G0203800 Rorug04G0203900 Rorug06G0289400
rosa_samantha	Rh4AG192100 Rh4AG235200 Rh4AG236000 Rh4AG260700 Rh4AG260900 Rh4BG190000 Rh4BG238700 Rh4BG266400 Rh4BG266600 Rh4BG266700 Rh4CG202900 Rh4CG250700 Rh4CG277700 Rh4CG277900 Rh4CG278000 Rh4DG235300 Rh4DG262700 Rh4DG262900 Rh4DG263100 Rh6BG409300 Rh6DG401700
rosa_wichuraiana	Rw4G016340 Rw4G019840 Rw4G022570 Rw4G022580 Rw4G022590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	579
AccB1I	GGYRCC	1 cut(s)	272
AccBSI	CCGCTC	1 cut(s)	448
AccI	GTMKAC	5 cut(s)	153, 237, 467, 611, 967
AccII	CGCG	3 cut(s)	219, 234, 726
AccIII	TCCGGA	1 cut(s)	395
AciI	CCGC	5 cut(s)	114, 334, 338, 448, 776
AcsI	RAATTY	1 cut(s)	180
AcvI	CACGTG	2 cut(s)	426, 686
AfaI	GTAC	5 cut(s)	148, 224, 704, 836, 843
AfiI	CCNNNNNNNGG	1 cut(s)	775
AflIII	ACRYGT	1 cut(s)	423
AgeI	ACCGGT	1 cut(s)	354
AgsI	TTSAA	3 cut(s)	31, 529, 859
AjnI	CCWGG	1 cut(s)	813
AjuI	GAANNNNNNNTTGG	2 cut(s)	11, 43
AluBI	AGCT	3 cut(s)	832, 962, 989
AluI	AGCT	3 cut(s)	832, 962, 989
Alw26I	GTCTC	1 cut(s)	200
Aor13HI	TCCGGA	1 cut(s)	395
ApeKI	GCWGC	2 cut(s)	266, 829
ApoI	RAATTY	1 cut(s)	180
ArsI	GACNNNNNNTTYG	2 cut(s)	604, 636
AsiGI	ACCGGT	1 cut(s)	354
AspLEI	GCGC	5 cut(s)	219, 234, 292, 502, 726
AspS9I	GGNCC	1 cut(s)	4
AsuC2I	CCSGG	1 cut(s)	200
AsuII	TTCGAA	1 cut(s)	39
AvaII	GGWCC	1 cut(s)	4
BanI	GGYRCC	1 cut(s)	272
BanII	GRGCYC	1 cut(s)	930
BbrPI	CACGTG	2 cut(s)	426, 686
BbvI	GCAGC	2 cut(s)	278, 841
BccI	CCATC	3 cut(s)	113, 466, 817
BciT130I	CCWGG	1 cut(s)	815
BcnI	CCSGG	1 cut(s)	200
BcoDI	GTCTC	1 cut(s)	200
BfmI	CTRYAG	2 cut(s)	70, 876
BfoI	RGCGCY	1 cut(s)	503
BisI	GCNGC	2 cut(s)	267, 830
BlsI	GCNGC	2 cut(s)	268, 831
BmcAI	AGTACT	2 cut(s)	148, 843
Bme1390I	CCNGG	2 cut(s)	200, 815
Bme18I	GGWCC	1 cut(s)	4
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	4 cut(s)	6, 274, 456, 927
BmrFI	CCNGG	2 cut(s)	200, 815
BmrI	ACTGGG	1 cut(s)	833
BmsI	GCATC	3 cut(s)	219, 277, 550
BmuI	ACTGGG	1 cut(s)	833
Bpu14I	TTCGAA	1 cut(s)	39
BpuEI	CTTGAG	2 cut(s)	327, 430
BpuMI	CCSGG	1 cut(s)	200
BsaAI	YACGTR	2 cut(s)	426, 686
BsaBI	GATNNNNATC	1 cut(s)	1002
BsaI	GGTCTC	1 cut(s)	200
BsaJI	CCNNGG	2 cut(s)	921, 980
BsaWI	WCCGGW	2 cut(s)	354, 395
BsaXI	ACNNNNNCTCC	2 cut(s)	818, 848
Bsc4I	CCNNNNNNNGG	1 cut(s)	775
Bse118I	RCCGGY	2 cut(s)	269, 354
Bse1I	ACTGG	1 cut(s)	839
Bse3DI	GCAATG	1 cut(s)	657
Bse8I	GATNNNNATC	1 cut(s)	1002
BseAI	TCCGGA	1 cut(s)	395
BseBI	CCWGG	1 cut(s)	815
BseDI	CCNNGG	2 cut(s)	921, 980
BseGI	GGATG	2 cut(s)	565, 828
BseJI	GATNNNNATC	1 cut(s)	1002
BseLI	CCNNNNNNNGG	1 cut(s)	775
BseMI	GCAATG	1 cut(s)	657
BseMII	CTCAG	2 cut(s)	72, 476
BseNI	ACTGG	1 cut(s)	839
BseRI	GAGGAG	2 cut(s)	599, 908
BseXI	GCAGC	2 cut(s)	278, 841
Bsh1236I	CGCG	3 cut(s)	219, 234, 726
Bsh1285I	CGRYCG	1 cut(s)	359
BshNI	GGYRCC	1 cut(s)	272
BshTI	ACCGGT	1 cut(s)	354
BsiEI	CGRYCG	1 cut(s)	359
BsiSI	CCGG	4 cut(s)	200, 270, 355, 396
BslI	CCNNNNNNNGG	1 cut(s)	775
BsmAI	GTCTC	1 cut(s)	200
Bso31I	GGTCTC	1 cut(s)	200
Bsp119I	TTCGAA	1 cut(s)	39
Bsp1286I	GDGCHC	1 cut(s)	930
Bsp13I	TCCGGA	1 cut(s)	395
Bsp143I	GATC	3 cut(s)	52, 162, 1003
Bsp19I	CCATGG	1 cut(s)	980
BspACI	CCGC	5 cut(s)	114, 334, 338, 448, 776
BspCNI	CTCAG	2 cut(s)	71, 475
BspEI	TCCGGA	1 cut(s)	395
BspFNI	CGCG	3 cut(s)	219, 234, 726
BspLI	GGNNCC	4 cut(s)	6, 274, 456, 927
BspMAI	CTGCAG	1 cut(s)	880
BspT104I	TTCGAA	1 cut(s)	39
BspT107I	GGYRCC	1 cut(s)	272
BspTNI	GGTCTC	1 cut(s)	200
BsrBI	CCGCTC	1 cut(s)	448
BsrDI	GCAATG	1 cut(s)	657
BsrFI	RCCGGY	2 cut(s)	269, 354
BsrI	ACTGG	1 cut(s)	839
BssAI	RCCGGY	2 cut(s)	269, 354
BssECI	CCNNGG	2 cut(s)	921, 980
BssMI	GATC	3 cut(s)	52, 162, 1003
BssT1I	CCWWGG	2 cut(s)	921, 980
Bst2UI	CCWGG	1 cut(s)	815
Bst4CI	ACNGT	4 cut(s)	74, 140, 151, 616
BstBAI	YACGTR	2 cut(s)	426, 686
BstBI	TTCGAA	1 cut(s)	39
BstC8I	GCNNGC	5 cut(s)	271, 338, 728, 766, 944
BstDEI	CTNAG	2 cut(s)	58, 462
BstDSI	CCRYGG	1 cut(s)	980
BstF5I	GGATG	2 cut(s)	565, 828
BstFNI	CGCG	3 cut(s)	219, 234, 726
BstH2I	RGCGCY	1 cut(s)	503
BstHHI	GCGC	5 cut(s)	219, 234, 292, 502, 726
BstKTI	GATC	3 cut(s)	55, 165, 1006
BstMAI	GTCTC	1 cut(s)	200
BstMBI	GATC	3 cut(s)	52, 162, 1003
BstMCI	CGRYCG	1 cut(s)	359
BstMWI	GCNNNNNNNGC	1 cut(s)	707
BstNI	CCWGG	1 cut(s)	815
BstNSI	RCATGY	2 cut(s)	606, 768
BstSCI	CCNGG	2 cut(s)	198, 813
BstSFI	CTRYAG	2 cut(s)	70, 876
BstUI	CGCG	3 cut(s)	219, 234, 726
BstV1I	GCAGC	2 cut(s)	278, 841
BstXI	CCANNNNNNTGG	1 cut(s)	387
BtgI	CCRYGG	1 cut(s)	980
BtgZI	GCGATG	3 cut(s)	26, 578, 691
BtsCI	GGATG	2 cut(s)	565, 828
BtsI	GCAGTG	1 cut(s)	258
BtsIMutI	CAGTG	3 cut(s)	145, 258, 621
Cac8I	GCNNGC	5 cut(s)	271, 338, 728, 766, 944
CfoI	GCGC	5 cut(s)	219, 234, 292, 502, 726
Cfr10I	RCCGGY	2 cut(s)	269, 354
Cfr13I	GGNCC	1 cut(s)	4
CseI	GACGC	1 cut(s)	223
Csp6I	GTAC	5 cut(s)	147, 223, 703, 835, 842
CspAI	ACCGGT	1 cut(s)	354
CviAII	CATG	6 cut(s)	166, 603, 754, 765, 797, 981
CviQI	GTAC	5 cut(s)	147, 223, 703, 835, 842
DdeI	CTNAG	2 cut(s)	58, 462
DpnI	GATC	3 cut(s)	54, 164, 1005
DpnII	GATC	3 cut(s)	52, 162, 1003
Eco130I	CCWWGG	2 cut(s)	921, 980
Eco24I	GRGCYC	1 cut(s)	930
Eco31I	GGTCTC	1 cut(s)	200
Eco47I	GGWCC	1 cut(s)	4
Eco72I	CACGTG	2 cut(s)	426, 686
EcoRII	CCWGG	1 cut(s)	813
EcoT14I	CCWWGG	2 cut(s)	921, 980
EcoT38I	GRGCYC	1 cut(s)	930
ErhI	CCWWGG	2 cut(s)	921, 980
FaeI	CATG	6 cut(s)	169, 606, 757, 768, 800, 984
FalI	AAGNNNNNCTT	2 cut(s)	509, 541
FatI	CATG	6 cut(s)	165, 602, 753, 764, 796, 980
FauI	CCCGC	1 cut(s)	345
FblI	GTMKAC	5 cut(s)	153, 237, 467, 611, 967
Fnu4HI	GCNGC	2 cut(s)	267, 830
FokI	GGATG	2 cut(s)	572, 835
FriOI	GRGCYC	1 cut(s)	930
Fsp4HI	GCNGC	2 cut(s)	267, 830
GlaI	GCGC	5 cut(s)	218, 233, 291, 501, 725
GluI	GCNGC	2 cut(s)	267, 830
HaeII	RGCGCY	1 cut(s)	503
HapII	CCGG	4 cut(s)	200, 270, 355, 396
HgaI	GACGC	1 cut(s)	223
HhaI	GCGC	5 cut(s)	219, 234, 292, 502, 726
Hin1II	CATG	6 cut(s)	169, 606, 757, 768, 800, 984
Hin6I	GCGC	5 cut(s)	217, 232, 290, 500, 724
HinP1I	GCGC	5 cut(s)	217, 232, 290, 500, 724
HincII	GTYRAC	3 cut(s)	238, 468, 612
HindII	GTYRAC	3 cut(s)	238, 468, 612
HinfI	GANTC	2 cut(s)	472, 654
HpaII	CCGG	4 cut(s)	200, 270, 355, 396
Hpy166II	GTNNAC	7 cut(s)	154, 223, 238, 468, 612, 968, 977
Hpy188I	TCNGA	6 cut(s)	52, 61, 263, 330, 375, 629
Hpy188III	TCNNGA	3 cut(s)	396, 551, 1007
Hpy8I	GTNNAC	7 cut(s)	154, 223, 238, 468, 612, 968, 977
Hpy99I	CGWCG	3 cut(s)	239, 472, 851
HpyAV	CCTTC	2 cut(s)	425, 436
HpyCH4III	ACNGT	4 cut(s)	74, 140, 151, 616
HpyCH4IV	ACGT	4 cut(s)	425, 685, 790, 809
HpyCH4V	TGCA	3 cut(s)	606, 716, 878
HpyF10VI	GCNNNNNNNGC	1 cut(s)	707
HpyF3I	CTNAG	2 cut(s)	58, 462
HpySE526I	ACGT	4 cut(s)	425, 685, 790, 809
Hsp92II	CATG	6 cut(s)	169, 606, 757, 768, 800, 984
HspAI	GCGC	5 cut(s)	217, 232, 290, 500, 724
Kpn2I	TCCGGA	1 cut(s)	395
KroI	GCCGGC	1 cut(s)	269
KroNI	GCCGGC	1 cut(s)	271
Kzo9I	GATC	3 cut(s)	52, 162, 1003
LmnI	GCTCC	5 cut(s)	263, 445, 630, 826, 925
Lsp1109I	GCAGC	2 cut(s)	278, 841
LweI	GCATC	3 cut(s)	219, 277, 550
MaeII	ACGT	4 cut(s)	425, 685, 790, 809
MaeIII	GTNAC	4 cut(s)	74, 686, 791, 799
MalI	GATC	3 cut(s)	54, 164, 1005
MbiI	CCGCTC	1 cut(s)	448
MboI	GATC	3 cut(s)	52, 162, 1003
MboII	GAAGA	3 cut(s)	112, 172, 893
MhlI	GDGCHC	1 cut(s)	930
MluCI	AATT	7 cut(s)	35, 180, 322, 492, 533, 784, 1037
MmeI	TCCRAC	1 cut(s)	241
MroI	TCCGGA	1 cut(s)	395
MroNI	GCCGGC	1 cut(s)	269
MseI	TTAA	1 cut(s)	368
MslI	CAYNNNNRTG	2 cut(s)	747, 758
MspA1I	CMGCKG	1 cut(s)	832
MspI	CCGG	4 cut(s)	200, 270, 355, 396
MspR9I	CCNGG	2 cut(s)	200, 815
MvaI	CCWGG	1 cut(s)	815
MvnI	CGCG	3 cut(s)	219, 234, 726
MwoI	GCNNNNNNNGC	1 cut(s)	707
NaeI	GCCGGC	1 cut(s)	271
NciI	CCSGG	1 cut(s)	200
NcoI	CCATGG	1 cut(s)	980
NdeII	GATC	3 cut(s)	52, 162, 1003
NgoMIV	GCCGGC	1 cut(s)	269
NlaIII	CATG	6 cut(s)	169, 606, 757, 768, 800, 984
NlaIV	GGNNCC	4 cut(s)	6, 274, 456, 927
NmuCI	GTSAC	1 cut(s)	686
NspI	RCATGY	2 cut(s)	606, 768
NspV	TTCGAA	1 cut(s)	39
PaeI	GCATGC	1 cut(s)	768
PcsI	WCGNNNNNNNCGW	1 cut(s)	231
PdiI	GCCGGC	1 cut(s)	271
PfeI	GAWTC	2 cut(s)	472, 654
PfoI	TCCNGGA	2 cut(s)	198, 813
PinAI	ACCGGT	1 cut(s)	354
PkrI	GCNGC	2 cut(s)	268, 831
PmaCI	CACGTG	2 cut(s)	426, 686
PmlI	CACGTG	2 cut(s)	426, 686
Ppu21I	YACGTR	2 cut(s)	426, 686
PsiI	TTATAA	1 cut(s)	579
Psp6I	CCWGG	1 cut(s)	813
PspCI	CACGTG	2 cut(s)	426, 686
PspGI	CCWGG	1 cut(s)	813
PspN4I	GGNNCC	4 cut(s)	6, 274, 456, 927
PspPI	GGNCC	1 cut(s)	4
PstI	CTGCAG	1 cut(s)	880
PvuII	CAGCTG	1 cut(s)	832
RsaI	GTAC	5 cut(s)	148, 224, 704, 836, 843
RsaNI	GTAC	5 cut(s)	147, 223, 703, 835, 842
RseI	CAYNNNNRTG	2 cut(s)	747, 758
SalI	GTCGAC	3 cut(s)	236, 466, 610
SaqAI	TTAA	1 cut(s)	368
SatI	GCNGC	2 cut(s)	267, 830
Sau3AI	GATC	3 cut(s)	52, 162, 1003
Sau96I	GGNCC	1 cut(s)	4
ScaI	AGTACT	2 cut(s)	148, 843
ScrFI	CCNGG	2 cut(s)	200, 815
SduI	GDGCHC	1 cut(s)	930
SfaNI	GCATC	3 cut(s)	219, 277, 550
SfcI	CTRYAG	2 cut(s)	70, 876
SfuI	TTCGAA	1 cut(s)	39
SinI	GGWCC	1 cut(s)	4
SmiMI	CAYNNNNRTG	2 cut(s)	747, 758
SmlI	CTYRAG	2 cut(s)	342, 409
SmoI	CTYRAG	2 cut(s)	342, 409
SphI	GCATGC	1 cut(s)	768
Sse9I	AATT	7 cut(s)	35, 180, 322, 492, 533, 784, 1037
SsiI	CCGC	5 cut(s)	114, 334, 338, 448, 776
StyD4I	CCNGG	2 cut(s)	198, 813
StyI	CCWWGG	2 cut(s)	921, 980
TaaI	ACNGT	4 cut(s)	74, 140, 151, 616
TaiI	ACGT	4 cut(s)	428, 688, 793, 812
TaqI	TCGA	6 cut(s)	39, 237, 467, 611, 648, 849
TasI	AATT	7 cut(s)	35, 180, 322, 492, 533, 784, 1037
TatI	WGTACW	2 cut(s)	146, 841
TfiI	GAWTC	2 cut(s)	472, 654
Tru1I	TTAA	1 cut(s)	368
Tru9I	TTAA	1 cut(s)	368
TscAI	CASTG	3 cut(s)	145, 258, 621
TseFI	GTSAC	1 cut(s)	686
TseI	GCWGC	2 cut(s)	266, 829
Tsp45I	GTSAC	1 cut(s)	686
TspDTI	ATGAA	4 cut(s)	121, 646, 892, 924
TspGWI	ACGGA	1 cut(s)	306
TspRI	CASTG	3 cut(s)	145, 258, 621
VpaK11BI	GGWCC	1 cut(s)	4
XapI	RAATTY	1 cut(s)	180
XceI	RCATGY	2 cut(s)	606, 768
XmiI	GTMKAC	5 cut(s)	153, 237, 467, 611, 967
ZrmI	AGTACT	2 cut(s)	148, 843

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.