Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0000808

Physical Location & Seq

Genomic Coordinates Reverse (-)

45409510 .. 45411066

Gene Structure 1557 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00364100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGGCTGAACCTGCGTGCAAGAAATTTGACATCGTTTCGGACCACTCAGACCACTACTACAGCACCGTGAAAACGCATGGGAAAGGAAAGAACAACAACGGAGATGGACATAGTTTCATCAATGGCAGTACAGTCTACAAGAATATCATGCGCGAGTGGAAAATCTTGGAGAAGAACCTCCCAGACGCCATCTACGTGCGCGCGTACGAGACCCGTGTCGACCTTATGAGGGCTGTGATTATCGGAGCAGCTGACACACCTTATCAGGATGGACTCTTCTTCTTTGACATCAAGTTTCCGCCGGATTACCCTGACCACCCACCCCATGTCTACTACCGATCGCATGGTCTGTCTCTCAACCCAAGCCTAGGATCAAATGGATACATCTGTTTAAGCCTTCTCAACACGTGGATTGGCTGGAGGAGTGAGCGGTGGCACTTATCTAGGTCGACGATCCTCCAAGTTTTGGTGTCGATTCAGGGACTCGTTCTCAACGAGAGACCCTATTATAACGAGGCAGGTCTGGGTTTTCTTGACAGGAGTATCCTTAGACATCTTACAGAGTATCGATACAAAACTTACAACGCAAAGGCGTTTGTATTAACTTGCAAGTCGACGCTGTATTTGCTAAAAAATCCACCAAAGAATTTTGAGTCTTTCATCGCCGAACACTTTCGTCAGAGAGCCAGCGGCATACTGAGAGCGAGTGGTTTGTTAGAAGGATATTATGTGACCATGCGCATGCGTTTTTCAATTGGGAATTCACAATATACTTCAATGGAGCTTTTGTACCCAGAACTCGTCGAGGCTTTTAGAAAGAATGGTTGGGTGGAGGATGACTTGCAGGTGGTAGAGGAGAGTTCAACGCAGTTGGCGGATCAAGTGGAGAGGAAAGCTAAGCTGCTCTTTTCATGGCTGTTTTGTTGTTTACCTTGGTTATCCTGGGCCGCTAATAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0031625 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044424 GO:0044444 GO:0044464 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

319

Amino Acids

36.9

Weight (kDa)

8.44

Isoelectric Point (pI)

31.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	49 - 165	1.7e-19	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000808)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g01260 FvH4_4g19890 FvH4_4g19900 FvH4_4g19910 FvH4_4g23111
malus_domestica	MD16G1152700.v1.1
prunus_persica	Prupe.1G115900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0415111 RchiOBHm_Chr4g0421801 RchiOBHm_Chr4g0425521 RchiOBHm_Chr4g0425551
rosa_laevigata	RLG00000007355 RLG00000007357 RLG00000007358 RLG00000007360 RLG00000007361 RLG00000007364 RLG00000007366 RLG00000007640 RLG00000008097 RLG00000022500
rosa_multiflora	Rmu_co8278857.1_g000001 Rmu_sc0000635.1_g000001 Rmu_sc0000709.1_g000009 Rmu_sc0001900.1_g000008 Rmu_sc0001900.1_g000009 Rmu_sc0003748.1_g000014 Rmu_sc0008440.1_g000003 Rmu_sc0010306.1_g000005 Rmu_sc0012856.1_g000010 Rmu_sc0032188.1_g000001
rosa_roxburghii	Rroxscaffold_5G00364100 Rroxscaffold_5G00367460 Rroxscaffold_5G00367480 Rroxscaffold_5G00367490 Rroxscaffold_5G00367510 Rroxscaffold_5G00371110
rosa_rugosa	Rorug04G0176300 Rorug04G0203700 Rorug04G0203800 Rorug04G0203800 Rorug04G0203900 Rorug06G0289400
rosa_samantha	Rh4AG192100 Rh4AG235200 Rh4AG236000 Rh4AG260700 Rh4AG260900 Rh4BG190000 Rh4BG238700 Rh4BG266400 Rh4BG266600 Rh4BG266700 Rh4CG202900 Rh4CG250700 Rh4CG277700 Rh4CG277900 Rh4CG278000 Rh4DG235300 Rh4DG262700 Rh4DG262900 Rh4DG263100 Rh6BG409300 Rh6DG401700
rosa_wichuraiana	Rw4G016340 Rw4G019840 Rw4G022570 Rw4G022580 Rw4G022590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	510
AarI	CACCTGC	1 cut(s)	835
Acc16I	TGCGCA	1 cut(s)	740
Acc36I	ACCTGC	3 cut(s)	19, 509, 835
AccB7I	CCANNNNNTGG	1 cut(s)	466
AccBSI	CCGCTC	1 cut(s)	430
AccI	GTMKAC	5 cut(s)	135, 219, 330, 449, 614
AccII	CGCG	3 cut(s)	153, 201, 203
AciI	CCGC	5 cut(s)	299, 430, 690, 875, 948
AclWI	GGATC	3 cut(s)	379, 448, 885
AcsI	RAATTY	3 cut(s)	23, 646, 760
AcvI	CACGTG	1 cut(s)	408
AcyI	GRCGYC	1 cut(s)	186
AfaI	GTAC	3 cut(s)	130, 206, 791
AfiI	CCNNNNNNNGG	3 cut(s)	229, 368, 466
AflIII	ACRYGT	1 cut(s)	405
AgsI	TTSAA	3 cut(s)	753, 777, 864
AjnI	CCWGG	1 cut(s)	941
AjuI	GAANNNNNNNTTGG	2 cut(s)	808, 840
AluBI	AGCT	4 cut(s)	251, 784, 896, 901
AluI	AGCT	4 cut(s)	251, 784, 896, 901
Alw26I	GTCTC	3 cut(s)	203, 357, 493
AlwI	GGATC	3 cut(s)	379, 448, 885
AoxI	GGCC	1 cut(s)	945
ApeKI	GCWGC	2 cut(s)	248, 901
ApoI	RAATTY	3 cut(s)	23, 646, 760
ArsI	GACNNNNNNTTYG	2 cut(s)	607, 639
Asp700I	GAANNNNTTC	1 cut(s)	672
AspA2I	CCTAGG	1 cut(s)	367
AspLEI	GCGC	4 cut(s)	153, 201, 203, 741
AspS9I	GGNCC	2 cut(s)	40, 945
AvaII	GGWCC	1 cut(s)	40
AvrII	CCTAGG	1 cut(s)	367
BaeI	ACNNNNGTAYC	4 cut(s)	373, 406, 526, 559
BbrPI	CACGTG	1 cut(s)	408
BbvI	GCAGC	2 cut(s)	260, 888
BccI	CCATC	3 cut(s)	98, 197, 263
BciT130I	CCWGG	1 cut(s)	943
BciVI	GTATCC	2 cut(s)	374, 554
BcoDI	GTCTC	3 cut(s)	203, 357, 493
BfaI	CTAG	2 cut(s)	368, 444
BfmI	CTRYAG	1 cut(s)	58
BfuAI	ACCTGC	3 cut(s)	19, 509, 835
BfuI	GTATCC	2 cut(s)	374, 554
BisI	GCNGC	4 cut(s)	249, 691, 902, 948
BlnI	CCTAGG	1 cut(s)	367
BlpI	GCTNAGC	1 cut(s)	897
BlsI	GCNGC	4 cut(s)	250, 692, 903, 949
Bme1390I	CCNGG	1 cut(s)	943
Bme18I	GGWCC	1 cut(s)	40
BmgT120I	GGNCC	2 cut(s)	40, 945
BmrFI	CCNGG	1 cut(s)	943
BoxI	GACNNNNGTC	1 cut(s)	215
BpmI	CTGGAG	1 cut(s)	439
Bpu1102I	GCTNAGC	1 cut(s)	897
Bsa29I	ATCGAT	1 cut(s)	568
BsaAI	YACGTR	2 cut(s)	196, 408
BsaHI	GRCGYC	1 cut(s)	186
BsaI	GGTCTC	2 cut(s)	203, 493
BsaJI	CCNNGG	3 cut(s)	367, 932, 942
BsaXI	ACNNNNNCTCC	2 cut(s)	773, 803
Bsc4I	CCNNNNNNNGG	3 cut(s)	229, 368, 466
BseBI	CCWGG	1 cut(s)	943
BseCI	ATCGAT	1 cut(s)	568
BseDI	CCNNGG	3 cut(s)	367, 932, 942
BseGI	GGATG	2 cut(s)	274, 841
BseLI	CCNNNNNNNGG	3 cut(s)	229, 368, 466
BseMII	CTCAG	2 cut(s)	60, 689
BsePI	GCGCGC	1 cut(s)	199
BseRI	GAGGAG	2 cut(s)	436, 869
BseXI	GCAGC	2 cut(s)	260, 888
Bsh1236I	CGCG	3 cut(s)	153, 201, 203
Bsh1285I	CGRYCG	1 cut(s)	341
BshFI	GGCC	1 cut(s)	947
BshVI	ATCGAT	1 cut(s)	568
BsiEI	CGRYCG	1 cut(s)	341
BsiSI	CCGG	1 cut(s)	302
BsiWI	CGTACG	1 cut(s)	204
BslFI	GGGAC	1 cut(s)	495
BslI	CCNNNNNNNGG	3 cut(s)	229, 368, 466
BsmAI	GTCTC	3 cut(s)	203, 357, 493
BsmFI	GGGAC	1 cut(s)	495
BsnI	GGCC	1 cut(s)	947
Bso31I	GGTCTC	2 cut(s)	203, 493
Bsp143I	GATC	4 cut(s)	338, 371, 453, 877
Bsp1720I	GCTNAGC	1 cut(s)	897
BspACI	CCGC	5 cut(s)	299, 430, 690, 875, 948
BspANI	GGCC	1 cut(s)	947
BspCNI	CTCAG	2 cut(s)	59, 690
BspDI	ATCGAT	1 cut(s)	568
BspFNI	CGCG	3 cut(s)	153, 201, 203
BspMI	ACCTGC	3 cut(s)	19, 509, 835
BspPI	GGATC	3 cut(s)	379, 448, 885
BspTNI	GGTCTC	2 cut(s)	203, 493
BsrBI	CCGCTC	1 cut(s)	430
BssECI	CCNNGG	3 cut(s)	367, 932, 942
BssHII	GCGCGC	1 cut(s)	199
BssMI	GATC	4 cut(s)	338, 371, 453, 877
BssNI	GRCGYC	1 cut(s)	186
BssT1I	CCWWGG	2 cut(s)	367, 932
Bst2UI	CCWGG	1 cut(s)	943
Bst4CI	ACNGT	2 cut(s)	67, 133
Bst6I	CTCTTC	1 cut(s)	281
BstACI	GRCGYC	1 cut(s)	186
BstBAI	YACGTR	2 cut(s)	196, 408
BstC8I	GCNNGC	4 cut(s)	16, 201, 688, 743
BstDEI	CTNAG	4 cut(s)	46, 548, 698, 897
BstF5I	GGATG	2 cut(s)	274, 841
BstFNI	CGCG	3 cut(s)	153, 201, 203
BstHHI	GCGC	4 cut(s)	153, 201, 203, 741
BstKTI	GATC	4 cut(s)	341, 374, 456, 880
BstMAI	GTCTC	3 cut(s)	203, 357, 493
BstMBI	GATC	4 cut(s)	338, 371, 453, 877
BstMCI	CGRYCG	1 cut(s)	341
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 625
BstNI	CCWGG	1 cut(s)	943
BstNSI	RCATGY	1 cut(s)	745
BstPAI	GACNNNNGTC	1 cut(s)	215
BstSCI	CCNGG	1 cut(s)	941
BstSFI	CTRYAG	1 cut(s)	58
BstUI	CGCG	3 cut(s)	153, 201, 203
BstV1I	GCAGC	2 cut(s)	260, 888
Bsu15I	ATCGAT	1 cut(s)	568
BsuI	GTATCC	2 cut(s)	374, 554
BsuRI	GGCC	1 cut(s)	947
BsuTUI	ATCGAT	1 cut(s)	568
BtgZI	GCGATG	1 cut(s)	646
BtsCI	GGATG	2 cut(s)	274, 841
BveI	ACCTGC	3 cut(s)	19, 509, 835
Cac8I	GCNNGC	4 cut(s)	16, 201, 688, 743
CfoI	GCGC	4 cut(s)	153, 201, 203, 741
Cfr13I	GGNCC	2 cut(s)	40, 945
ClaI	ATCGAT	1 cut(s)	568
CseI	GACGC	2 cut(s)	194, 625
Csp6I	GTAC	3 cut(s)	129, 205, 790
CviAII	CATG	7 cut(s)	77, 148, 326, 344, 736, 742, 912
CviQI	GTAC	3 cut(s)	129, 205, 790
DdeI	CTNAG	4 cut(s)	46, 548, 698, 897
DpnI	GATC	4 cut(s)	340, 373, 455, 879
DpnII	GATC	4 cut(s)	338, 371, 453, 877
Eam1104I	CTCTTC	1 cut(s)	281
EarI	CTCTTC	1 cut(s)	281
EciI	GGCGGA	2 cut(s)	288, 890
Eco130I	CCWWGG	2 cut(s)	367, 932
Eco31I	GGTCTC	2 cut(s)	203, 493
Eco47I	GGWCC	1 cut(s)	40
Eco72I	CACGTG	1 cut(s)	408
EcoRI	GAATTC	1 cut(s)	760
EcoRII	CCWGG	1 cut(s)	941
EcoT14I	CCWWGG	2 cut(s)	367, 932
ErhI	CCWWGG	2 cut(s)	367, 932
FaeI	CATG	7 cut(s)	80, 151, 329, 347, 739, 745, 915
FalI	AAGNNNNNCTT	2 cut(s)	890, 922
FaqI	GGGAC	1 cut(s)	495
FatI	CATG	7 cut(s)	76, 147, 325, 343, 735, 741, 911
FblI	GTMKAC	5 cut(s)	135, 219, 330, 449, 614
Fnu4HI	GCNGC	4 cut(s)	249, 691, 902, 948
FokI	GGATG	2 cut(s)	281, 848
Fsp4HI	GCNGC	4 cut(s)	249, 691, 902, 948
FspAI	RTGCGCAY	1 cut(s)	740
FspBI	CTAG	2 cut(s)	368, 444
FspI	TGCGCA	1 cut(s)	740
GlaI	GCGC	4 cut(s)	152, 200, 202, 740
GluI	GCNGC	4 cut(s)	249, 691, 902, 948
GsuI	CTGGAG	1 cut(s)	439
HaeIII	GGCC	1 cut(s)	947
HapII	CCGG	1 cut(s)	302
HgaI	GACGC	2 cut(s)	194, 625
HhaI	GCGC	4 cut(s)	153, 201, 203, 741
Hin1I	GRCGYC	1 cut(s)	186
Hin1II	CATG	7 cut(s)	80, 151, 329, 347, 739, 745, 915
Hin6I	GCGC	4 cut(s)	151, 199, 201, 739
HinP1I	GCGC	4 cut(s)	151, 199, 201, 739
HincII	GTYRAC	3 cut(s)	220, 450, 615
HindII	GTYRAC	3 cut(s)	220, 450, 615
HinfI	GANTC	4 cut(s)	273, 475, 483, 653
HpaII	CCGG	1 cut(s)	302
Hpy166II	GTNNAC	6 cut(s)	136, 220, 331, 450, 615, 929
Hpy188I	TCNGA	4 cut(s)	40, 49, 245, 681
Hpy188III	TCNNGA	2 cut(s)	266, 533
Hpy8I	GTNNAC	6 cut(s)	136, 220, 331, 450, 615, 929
Hpy99I	CGWCG	3 cut(s)	454, 619, 806
HpyAV	CCTTC	2 cut(s)	407, 713
HpyCH4III	ACNGT	2 cut(s)	67, 133
HpyCH4IV	ACGT	2 cut(s)	195, 407
HpyCH4V	TGCA	3 cut(s)	18, 609, 844
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 625
HpyF3I	CTNAG	4 cut(s)	46, 548, 698, 897
HpySE526I	ACGT	2 cut(s)	195, 407
Hsp92I	GRCGYC	1 cut(s)	186
Hsp92II	CATG	7 cut(s)	80, 151, 329, 347, 739, 745, 915
HspAI	GCGC	4 cut(s)	151, 199, 201, 739
Kzo9I	GATC	4 cut(s)	338, 371, 453, 877
LmnI	GCTCC	2 cut(s)	245, 781
Lsp1109I	GCAGC	2 cut(s)	260, 888
MaeI	CTAG	2 cut(s)	368, 444
MaeII	ACGT	2 cut(s)	195, 407
MaeIII	GTNAC	1 cut(s)	730
MalI	GATC	4 cut(s)	340, 373, 455, 879
MbiI	CCGCTC	1 cut(s)	430
MboI	GATC	4 cut(s)	338, 371, 453, 877
MboII	GAAGA	3 cut(s)	184, 268, 271
MfeI	CAATTG	1 cut(s)	753
MluCI	AATT	4 cut(s)	23, 646, 753, 760
MlyI	GAGTC	3 cut(s)	267, 477, 662
MnlI	CCTC	9 cut(s)	188, 222, 414, 467, 508, 799, 826, 847, 882
MroXI	GAANNNNTTC	1 cut(s)	672
MseI	TTAA	2 cut(s)	392, 602
MslI	CAYNNNNRTG	2 cut(s)	194, 740
MspA1I	CMGCKG	2 cut(s)	251, 690
MspI	CCGG	1 cut(s)	302
MspR9I	CCNGG	1 cut(s)	943
MunI	CAATTG	1 cut(s)	753
MvaI	CCWGG	1 cut(s)	943
MvnI	CGCG	3 cut(s)	153, 201, 203
MwoI	GCNNNNNNNGC	2 cut(s)	11, 625
NdeII	GATC	4 cut(s)	338, 371, 453, 877
NlaIII	CATG	7 cut(s)	80, 151, 329, 347, 739, 745, 915
NmuCI	GTSAC	1 cut(s)	730
NsbI	TGCGCA	1 cut(s)	740
NspI	RCATGY	1 cut(s)	745
PaeI	GCATGC	1 cut(s)	745
PaqCI	CACCTGC	1 cut(s)	835
PauI	GCGCGC	1 cut(s)	199
PcsI	WCGNNNNNNNCGW	2 cut(s)	192, 492
PdmI	GAANNNNTTC	1 cut(s)	672
PfeI	GAWTC	1 cut(s)	475
Pfl23II	CGTACG	1 cut(s)	204
PflMI	CCANNNNNTGG	1 cut(s)	466
PkrI	GCNGC	4 cut(s)	250, 692, 903, 949
Ple19I	CGATCG	1 cut(s)	341
PleI	GAGTC	3 cut(s)	267, 477, 661
PmaCI	CACGTG	1 cut(s)	408
PmlI	CACGTG	1 cut(s)	408
PpsI	GAGTC	3 cut(s)	267, 477, 661
Ppu21I	YACGTR	2 cut(s)	196, 408
PshAI	GACNNNNGTC	1 cut(s)	215
PsiI	TTATAA	1 cut(s)	510
Psp6I	CCWGG	1 cut(s)	941
PspCI	CACGTG	1 cut(s)	408
PspGI	CCWGG	1 cut(s)	941
PspLI	CGTACG	1 cut(s)	204
PspPI	GGNCC	2 cut(s)	40, 945
PteI	GCGCGC	1 cut(s)	199
PvuI	CGATCG	1 cut(s)	341
PvuII	CAGCTG	1 cut(s)	251
RsaI	GTAC	3 cut(s)	130, 206, 791
RsaNI	GTAC	3 cut(s)	129, 205, 790
RseI	CAYNNNNRTG	2 cut(s)	194, 740
SalI	GTCGAC	3 cut(s)	218, 448, 613
SaqAI	TTAA	2 cut(s)	392, 602
SatI	GCNGC	4 cut(s)	249, 691, 902, 948
Sau3AI	GATC	4 cut(s)	338, 371, 453, 877
Sau96I	GGNCC	2 cut(s)	40, 945
SchI	GAGTC	3 cut(s)	267, 477, 662
ScrFI	CCNGG	1 cut(s)	943
SfcI	CTRYAG	1 cut(s)	58
SinI	GGWCC	1 cut(s)	40
SmiMI	CAYNNNNRTG	2 cut(s)	194, 740
SphI	GCATGC	1 cut(s)	745
Sse9I	AATT	4 cut(s)	23, 646, 753, 760
SsiI	CCGC	5 cut(s)	299, 430, 690, 875, 948
SspMI	CTAG	2 cut(s)	368, 444
StyD4I	CCNGG	1 cut(s)	941
StyI	CCWWGG	2 cut(s)	367, 932
TaaI	ACNGT	2 cut(s)	67, 133
TaiI	ACGT	2 cut(s)	198, 410
TaqI	TCGA	6 cut(s)	219, 449, 473, 568, 614, 804
TasI	AATT	4 cut(s)	23, 646, 753, 760
TatI	WGTACW	1 cut(s)	128
TauI	GCSGC	2 cut(s)	693, 950
TfiI	GAWTC	1 cut(s)	475
Tru1I	TTAA	2 cut(s)	392, 602
Tru9I	TTAA	2 cut(s)	392, 602
TseFI	GTSAC	1 cut(s)	730
TseI	GCWGC	2 cut(s)	248, 901
Tsp45I	GTSAC	1 cut(s)	730
TspDTI	ATGAA	3 cut(s)	106, 649, 900
TspGWI	ACGGA	1 cut(s)	114
Van91I	CCANNNNNTGG	1 cut(s)	466
VpaK11BI	GGWCC	1 cut(s)	40
XapI	RAATTY	3 cut(s)	23, 646, 760
XceI	RCATGY	1 cut(s)	745
XmaJI	CCTAGG	1 cut(s)	367
XmiI	GTMKAC	5 cut(s)	135, 219, 330, 449, 614
XmnI	GAANNNNTTC	1 cut(s)	672
XspI	CTAG	2 cut(s)	368, 444

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.