Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001900.1

Orthogroup ID

OG0000808

Physical Location & Seq

Genomic Coordinates Reverse (-)

54078 .. 55055

Gene Structure 978 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001900.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

atggcgcccttagtggagagcttccacagattcgacgtcgtctcggaccattcagaccaccactacagcaacactgacgggaacggaaacagtttcacctactgtggaagcacagtgtacaagaagatcatgcgcgagtggaaaattctaagtaagcacctcccggactcgacctatgtgcgagtgtacaacactcgaatcgacctactgagagccgtcattgttggagcagccagcactccttaccacgacggattgttcttcttcgacatcaagttcccgtccaactacccgtaccaaccgccacaggtccattaccattcccacggattgaggctcaatccgaatctgtatgaaagcggcaaggtctgtctgagcttgctcaatacgtggtccgggaaaaagaaagagatgtgggatccaaatcagtcgactatcctccaagtgctggtgtctatacaaggactggttctgaacgaaaagcccttctataatgaaccctttcgtctccgtatctttcaggaggagaactcccgtcgttacaatgaggacgcgtttatcaaaacgtgcaagacgacgttgtatttgctccaaaaaccgcccaagaattttgagcttttcaccgccgaccattttcgacagagagcaaaccggatactgagagcttgtaacgcttacactaacagtcgtgtgggagtcgggcactacagagatgacaatgaaaatgtaactaaggatgacactaaagttaaggactctgcaatttcagttcaccctgtttcgacgacatttattgattcgatggaacagttgtacccgaaactcgttgtggtttttagatggaataaggcctcaaatttggtcgagcacttgaatttggagaacgttacgacgccacggggggctgcaggcatgctttgtcttctgctttgttgtgcattagtagcactgatttgttacttcatgtttagggcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0031625 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044424 GO:0044444 GO:0044464 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

325

Amino Acids

37.57

Weight (kDa)

8.88

Isoelectric Point (pI)

33.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000808)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g01260 FvH4_4g19890 FvH4_4g19900 FvH4_4g19910 FvH4_4g23111
malus_domestica	MD16G1152700.v1.1
prunus_persica	Prupe.1G115900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0415111 RchiOBHm_Chr4g0421801 RchiOBHm_Chr4g0425521 RchiOBHm_Chr4g0425551
rosa_laevigata	RLG00000007355 RLG00000007357 RLG00000007358 RLG00000007360 RLG00000007361 RLG00000007364 RLG00000007366 RLG00000007640 RLG00000008097 RLG00000022500
rosa_multiflora	Rmu_co8278857.1_g000001 Rmu_sc0000635.1_g000001 Rmu_sc0000709.1_g000009 Rmu_sc0001900.1_g000008 Rmu_sc0001900.1_g000009 Rmu_sc0003748.1_g000014 Rmu_sc0008440.1_g000003 Rmu_sc0010306.1_g000005 Rmu_sc0012856.1_g000010 Rmu_sc0032188.1_g000001
rosa_roxburghii	Rroxscaffold_5G00364100 Rroxscaffold_5G00367460 Rroxscaffold_5G00367480 Rroxscaffold_5G00367490 Rroxscaffold_5G00367510 Rroxscaffold_5G00371110
rosa_rugosa	Rorug04G0176300 Rorug04G0203700 Rorug04G0203800 Rorug04G0203800 Rorug04G0203900 Rorug06G0289400
rosa_samantha	Rh4AG192100 Rh4AG235200 Rh4AG236000 Rh4AG260700 Rh4AG260900 Rh4BG190000 Rh4BG238700 Rh4BG266400 Rh4BG266600 Rh4BG266700 Rh4CG202900 Rh4CG250700 Rh4CG277700 Rh4CG277900 Rh4CG278000 Rh4DG235300 Rh4DG262700 Rh4DG262900 Rh4DG263100 Rh6BG409300 Rh6DG401700
rosa_wichuraiana	Rw4G016340 Rw4G019840 Rw4G022570 Rw4G022580 Rw4G022590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	39
AccB1I	GGYRCC	1 cut(s)	4
AccB7I	CCANNNNNTGG	1 cut(s)	448
AccI	GTMKAC	1 cut(s)	431
AccII	CGCG	2 cut(s)	135, 554
AciI	CCGC	4 cut(s)	302, 360, 599, 624
AclI	AACGTT	1 cut(s)	885
AclWI	GGATC	2 cut(s)	413, 426
AcsI	RAATTY	4 cut(s)	144, 607, 856, 874
AcyI	GRCGYC	3 cut(s)	5, 36, 893
AfaI	GTAC	4 cut(s)	119, 188, 296, 815
AfiI	CCNNNNNNNGG	1 cut(s)	448
AflIII	ACRYGT	1 cut(s)	552
AgsI	TTSAA	1 cut(s)	874
AluBI	AGCT	4 cut(s)	21, 378, 616, 665
AluI	AGCT	4 cut(s)	21, 378, 616, 665
Alw21I	GWGCWC	1 cut(s)	870
Alw26I	GTCTC	2 cut(s)	46, 512
AlwI	GGATC	2 cut(s)	413, 426
AoxI	GGCC	1 cut(s)	849
ApeKI	GCWGC	2 cut(s)	230, 905
ApoI	RAATTY	4 cut(s)	144, 607, 856, 874
ArsI	GACNNNNNNTTYG	2 cut(s)	568, 600
Asp700I	GAANNNNTTC	1 cut(s)	501
AspLEI	GCGC	2 cut(s)	7, 135
AspS9I	GGNCC	3 cut(s)	46, 310, 393
AsuC2I	CCSGG	2 cut(s)	164, 397
AsuHPI	GGTGA	3 cut(s)	88, 613, 764
AvaII	GGWCC	3 cut(s)	46, 310, 393
BaeGI	GKGCMC	1 cut(s)	705
BaeI	ACNNNNGTAYC	2 cut(s)	797, 830
BamHI	GGATCC	1 cut(s)	418
BanI	GGYRCC	1 cut(s)	4
BbsI	GAAGAC	1 cut(s)	914
Bbv12I	GWGCWC	1 cut(s)	870
BbvI	GCAGC	2 cut(s)	242, 892
BccI	CCATC	2 cut(s)	796, 834
BceAI	ACGGC	1 cut(s)	200
BcgI	CGANNNNNNTGC	2 cut(s)	160, 194
BciVI	GTATCC	1 cut(s)	648
BcnI	CCSGG	2 cut(s)	164, 397
BcoDI	GTCTC	2 cut(s)	46, 512
BfmI	CTRYAG	3 cut(s)	64, 706, 906
BfoI	RGCGCY	1 cut(s)	8
BfuI	GTATCC	1 cut(s)	648
BisI	GCNGC	3 cut(s)	231, 361, 906
BlsI	GCNGC	3 cut(s)	232, 362, 907
Bme1390I	CCNGG	2 cut(s)	164, 397
Bme18I	GGWCC	3 cut(s)	46, 310, 393
BmgT120I	GGNCC	3 cut(s)	46, 310, 393
BmiI	GGNNCC	2 cut(s)	6, 420
BmrFI	CCNGG	2 cut(s)	164, 397
BpiI	GAAGAC	1 cut(s)	914
BplI	GAGNNNNNCTC	2 cut(s)	515, 547
BpuMI	CCSGG	2 cut(s)	164, 397
BsaAI	YACGTR	1 cut(s)	390
BsaBI	GATNNNNATC	1 cut(s)	423
BsaHI	GRCGYC	3 cut(s)	5, 36, 893
BsaJI	CCNNGG	2 cut(s)	325, 896
BsaWI	WCCGGW	1 cut(s)	651
Bsc4I	CCNNNNNNNGG	1 cut(s)	448
Bse1I	ACTGG	1 cut(s)	471
Bse8I	GATNNNNATC	1 cut(s)	423
BseDI	CCNNGG	2 cut(s)	325, 896
BseGI	GGATG	1 cut(s)	742
BseJI	GATNNNNATC	1 cut(s)	423
BseLI	CCNNNNNNNGG	1 cut(s)	448
BseMII	CTCAG	3 cut(s)	200, 365, 650
BseNI	ACTGG	1 cut(s)	471
BseRI	GAGGAG	1 cut(s)	539
BseSI	GKGCMC	1 cut(s)	705
BseXI	GCAGC	2 cut(s)	242, 892
Bsh1236I	CGCG	2 cut(s)	135, 554
BshFI	GGCC	1 cut(s)	851
BshNI	GGYRCC	1 cut(s)	4
BsiHKAI	GWGCWC	1 cut(s)	870
BsiSI	CCGG	3 cut(s)	164, 396, 652
BslI	CCNNNNNNNGG	1 cut(s)	448
BsmAI	GTCTC	2 cut(s)	46, 512
BsmBI	CGTCTC	2 cut(s)	46, 512
BsnI	GGCC	1 cut(s)	851
Bsp1286I	GDGCHC	2 cut(s)	705, 870
Bsp1407I	TGTACA	2 cut(s)	117, 186
Bsp143I	GATC	2 cut(s)	126, 418
BspACI	CCGC	4 cut(s)	302, 360, 599, 624
BspANI	GGCC	1 cut(s)	851
BspCNI	CTCAG	3 cut(s)	201, 366, 651
BspFNI	CGCG	2 cut(s)	135, 554
BspLI	GGNNCC	2 cut(s)	6, 420
BspMAI	CTGCAG	1 cut(s)	910
BspPI	GGATC	2 cut(s)	413, 426
BspT107I	GGYRCC	1 cut(s)	4
BsrGI	TGTACA	2 cut(s)	117, 186
BsrI	ACTGG	1 cut(s)	471
BssECI	CCNNGG	2 cut(s)	325, 896
BssMI	GATC	2 cut(s)	126, 418
BssNI	GRCGYC	3 cut(s)	5, 36, 893
Bst4CI	ACNGT	5 cut(s)	92, 104, 115, 686, 810
BstACI	GRCGYC	3 cut(s)	5, 36, 893
BstAUI	TGTACA	2 cut(s)	117, 186
BstBAI	YACGTR	1 cut(s)	390
BstC8I	GCNNGC	4 cut(s)	235, 380, 910, 914
BstDEI	CTNAG	7 cut(s)	10, 149, 209, 374, 659, 732, 975
BstDSI	CCRYGG	2 cut(s)	325, 896
BstF5I	GGATG	1 cut(s)	742
BstFNI	CGCG	2 cut(s)	135, 554
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	2 cut(s)	7, 135
BstKTI	GATC	2 cut(s)	129, 421
BstMAI	GTCTC	2 cut(s)	46, 512
BstMBI	GATC	2 cut(s)	126, 418
BstMWI	GCNNNNNNNGC	2 cut(s)	671, 944
BstNSI	RCATGY	1 cut(s)	916
BstSCI	CCNGG	2 cut(s)	162, 395
BstSFI	CTRYAG	3 cut(s)	64, 706, 906
BstSLI	GKGCMC	1 cut(s)	705
BstUI	CGCG	2 cut(s)	135, 554
BstV1I	GCAGC	2 cut(s)	242, 892
BstV2I	GAAGAC	1 cut(s)	914
BstX2I	RGATCY	1 cut(s)	418
BstYI	RGATCY	1 cut(s)	418
BsuI	GTATCC	1 cut(s)	648
BsuRI	GGCC	1 cut(s)	851
BtgI	CCRYGG	2 cut(s)	325, 896
BtsCI	GGATG	1 cut(s)	742
BtsIMutI	CAGTG	3 cut(s)	72, 120, 947
Cac8I	GCNNGC	4 cut(s)	235, 380, 910, 914
CfoI	GCGC	2 cut(s)	7, 135
Cfr13I	GGNCC	3 cut(s)	46, 310, 393
CseI	GACGC	2 cut(s)	560, 901
Csp6I	GTAC	4 cut(s)	118, 187, 295, 814
CviAII	CATG	3 cut(s)	130, 913, 964
CviQI	GTAC	4 cut(s)	118, 187, 295, 814
DdeI	CTNAG	7 cut(s)	10, 149, 209, 374, 659, 732, 975
DinI	GGCGCC	1 cut(s)	6
DpnI	GATC	2 cut(s)	128, 420
DpnII	GATC	2 cut(s)	126, 418
Eco147I	AGGCCT	1 cut(s)	851
Eco47I	GGWCC	3 cut(s)	46, 310, 393
EgeI	GGCGCC	1 cut(s)	6
EheI	GGCGCC	1 cut(s)	6
Esp3I	CGTCTC	2 cut(s)	46, 512
FaeI	CATG	3 cut(s)	133, 916, 967
FaiI	YATR	7 cut(s)	131, 177, 354, 458, 492, 914, 965
FatI	CATG	3 cut(s)	129, 912, 963
FblI	GTMKAC	1 cut(s)	431
Fnu4HI	GCNGC	3 cut(s)	231, 361, 906
FokI	GGATG	1 cut(s)	749
Fsp4HI	GCNGC	3 cut(s)	231, 361, 906
GlaI	GCGC	2 cut(s)	6, 134
GluI	GCNGC	3 cut(s)	231, 361, 906
HaeII	RGCGCY	1 cut(s)	8
HaeIII	GGCC	1 cut(s)	851
HapII	CCGG	3 cut(s)	164, 396, 652
HgaI	GACGC	2 cut(s)	560, 901
HhaI	GCGC	2 cut(s)	7, 135
Hin1I	GRCGYC	3 cut(s)	5, 36, 893
Hin1II	CATG	3 cut(s)	133, 916, 967
Hin6I	GCGC	2 cut(s)	5, 133
HinP1I	GCGC	2 cut(s)	5, 133
HincII	GTYRAC	1 cut(s)	432
HindII	GTYRAC	1 cut(s)	432
HinfI	GANTC	7 cut(s)	30, 167, 198, 346, 696, 755, 797
HpaII	CCGG	3 cut(s)	164, 396, 652
HphI	GGTGA	3 cut(s)	88, 613, 764
Hpy166II	GTNNAC	4 cut(s)	118, 187, 432, 772
Hpy188I	TCNGA	5 cut(s)	46, 55, 345, 375, 474
Hpy188III	TCNNGA	1 cut(s)	521
Hpy8I	GTNNAC	4 cut(s)	118, 187, 432, 772
Hpy99I	CGWCG	7 cut(s)	38, 41, 254, 540, 580, 787, 895
HpyAV	CCTTC	1 cut(s)	496
HpyCH4III	ACNGT	5 cut(s)	92, 104, 115, 686, 810
HpyCH4IV	ACGT	5 cut(s)	36, 389, 566, 578, 885
HpyCH4V	TGCA	4 cut(s)	570, 761, 908, 938
HpyF10VI	GCNNNNNNNGC	2 cut(s)	671, 944
HpyF3I	CTNAG	7 cut(s)	10, 149, 209, 374, 659, 732, 975
HpySE526I	ACGT	5 cut(s)	36, 389, 566, 578, 885
Hsp92I	GRCGYC	3 cut(s)	5, 36, 893
Hsp92II	CATG	3 cut(s)	133, 916, 967
HspAI	GCGC	2 cut(s)	5, 133
KasI	GGCGCC	1 cut(s)	4
Kzo9I	GATC	2 cut(s)	126, 418
LmnI	GCTCC	2 cut(s)	227, 594
Lsp1109I	GCAGC	2 cut(s)	242, 892
MaeII	ACGT	5 cut(s)	36, 389, 566, 578, 885
MaeIII	GTNAC	5 cut(s)	539, 668, 727, 886, 956
MalI	GATC	2 cut(s)	128, 420
MboI	GATC	2 cut(s)	126, 418
MboII	GAAGA	4 cut(s)	136, 253, 256, 914
MflI	RGATCY	1 cut(s)	418
MhlI	GDGCHC	2 cut(s)	705, 870
MluCI	AATT	5 cut(s)	144, 607, 762, 856, 874
MluI	ACGCGT	1 cut(s)	552
Mly113I	GGCGCC	1 cut(s)	5
MlyI	GAGTC	3 cut(s)	161, 705, 749
MmeI	TCCRAC	2 cut(s)	205, 309
MnlI	CCTC	6 cut(s)	170, 327, 449, 517, 541, 862
MroXI	GAANNNNTTC	1 cut(s)	501
MseI	TTAA	1 cut(s)	750
MspI	CCGG	3 cut(s)	164, 396, 652
MspR9I	CCNGG	2 cut(s)	164, 397
MvnI	CGCG	2 cut(s)	135, 554
MwoI	GCNNNNNNNGC	2 cut(s)	671, 944
NarI	GGCGCC	1 cut(s)	5
NciI	CCSGG	2 cut(s)	164, 397
NdeII	GATC	2 cut(s)	126, 418
NlaIII	CATG	3 cut(s)	133, 916, 967
NlaIV	GGNNCC	2 cut(s)	6, 420
NspI	RCATGY	1 cut(s)	916
PaeI	GCATGC	1 cut(s)	916
PceI	AGGCCT	1 cut(s)	851
PcsI	WCGNNNNNNNCGW	1 cut(s)	572
PdmI	GAANNNNTTC	1 cut(s)	501
PfeI	GAWTC	4 cut(s)	30, 198, 346, 797
PflFI	GACNNNGTC	1 cut(s)	38
PflMI	CCANNNNNTGG	1 cut(s)	448
PfoI	TCCNGGA	2 cut(s)	162, 395
PkrI	GCNGC	3 cut(s)	232, 362, 907
PleI	GAGTC	3 cut(s)	161, 704, 749
PluTI	GGCGCC	1 cut(s)	8
PpsI	GAGTC	3 cut(s)	161, 704, 749
Ppu21I	YACGTR	1 cut(s)	390
Psp1406I	AACGTT	1 cut(s)	885
PspN4I	GGNNCC	2 cut(s)	6, 420
PspPI	GGNCC	3 cut(s)	46, 310, 393
PstI	CTGCAG	1 cut(s)	910
PsuI	RGATCY	1 cut(s)	418
PsyI	GACNNNGTC	1 cut(s)	38
RsaI	GTAC	4 cut(s)	119, 188, 296, 815
RsaNI	GTAC	4 cut(s)	118, 187, 295, 814
SalI	GTCGAC	1 cut(s)	430
SaqAI	TTAA	1 cut(s)	750
SatI	GCNGC	3 cut(s)	231, 361, 906
Sau3AI	GATC	2 cut(s)	126, 418
Sau96I	GGNCC	3 cut(s)	46, 310, 393
SchI	GAGTC	3 cut(s)	161, 705, 749
ScrFI	CCNGG	2 cut(s)	164, 397
SduI	GDGCHC	2 cut(s)	705, 870
SfcI	CTRYAG	3 cut(s)	64, 706, 906
SfoI	GGCGCC	1 cut(s)	6
SinI	GGWCC	3 cut(s)	46, 310, 393
SphI	GCATGC	1 cut(s)	916
Sse9I	AATT	5 cut(s)	144, 607, 762, 856, 874
SseBI	AGGCCT	1 cut(s)	851
SsiI	CCGC	4 cut(s)	302, 360, 599, 624
SspDI	GGCGCC	1 cut(s)	4
StuI	AGGCCT	1 cut(s)	851
StyD4I	CCNGG	2 cut(s)	162, 395
TaaI	ACNGT	5 cut(s)	92, 104, 115, 686, 810
TaiI	ACGT	5 cut(s)	39, 392, 569, 581, 888
TasI	AATT	5 cut(s)	144, 607, 762, 856, 874
TatI	WGTACW	2 cut(s)	117, 186
TauI	GCSGC	1 cut(s)	363
TfiI	GAWTC	4 cut(s)	30, 198, 346, 797
Tru1I	TTAA	1 cut(s)	750
Tru9I	TTAA	1 cut(s)	750
TscAI	CASTG	3 cut(s)	79, 120, 954
TseI	GCWGC	2 cut(s)	230, 905
TspDTI	ATGAA	4 cut(s)	369, 510, 735, 952
TspGWI	ACGGA	4 cut(s)	99, 267, 342, 500
TspRI	CASTG	3 cut(s)	79, 120, 954
Tth111I	GACNNNGTC	1 cut(s)	38
Van91I	CCANNNNNTGG	1 cut(s)	448
VpaK11BI	GGWCC	3 cut(s)	46, 310, 393
XapI	RAATTY	4 cut(s)	144, 607, 856, 874
XceI	RCATGY	1 cut(s)	916
XmiI	GTMKAC	1 cut(s)	431
XmnI	GAANNNNTTC	1 cut(s)	501
ZraI	GACGTC	1 cut(s)	37

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.